HEADER LIGASE 29-NOV-06 2O25 TITLE UBIQUITIN-CONJUGATING ENZYME E2-25 KDA COMPLEXED WITH SUMO-1- TITLE 2 CONJUGATING ENZYME UBC9 COMPND MOL_ID: 1; COMPND 2 MOLECULE: UBIQUITIN-CONJUGATING ENZYME E2-25 KDA; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: UBIQUITIN-PROTEIN LIGASE, UBIQUITIN CARRIER PROTEIN, E225K, COMPND 5 HUNTINGTIN-INTERACTING PROTEIN 2, HIP-2; COMPND 6 EC: 6.3.2.19; COMPND 7 ENGINEERED: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: SUMO-1-CONJUGATING ENZYME UBC9; COMPND 10 CHAIN: C, D; COMPND 11 SYNONYM: SUMO-1-PROTEIN LIGASE, UBIQUITIN-CONJUGATING ENZYME E2 I, COMPND 12 UBIQUITIN-PROTEIN LIGASE I, UBIQUITIN CARRIER PROTEIN I, UBIQUITIN COMPND 13 CARRIER PROTEIN 9, P18; COMPND 14 EC: 6.3.2.19; COMPND 15 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: HIP2, LIG; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET28-LIC; SOURCE 11 MOL_ID: 2; SOURCE 12 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 13 ORGANISM_COMMON: HUMAN; SOURCE 14 ORGANISM_TAXID: 9606; SOURCE 15 GENE: UBE2I, UBC9, UBCE9; SOURCE 16 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 17 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 18 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 19 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 20 EXPRESSION_SYSTEM_PLASMID: PET28-LIC KEYWDS LIGASE; UBL CONJUGATION PATHWAY, STRUCTURAL GENOMICS CONSORTIUM, SGC, KEYWDS 2 LIGASE EXPDTA X-RAY DIFFRACTION AUTHOR J.R.WALKER,G.V.AVVAKUMOV,S.XUE,E.M.NEWMAN,F.MACKENZIE,J.WEIGELT, AUTHOR 2 M.SUNDSTROM,C.H.ARROWSMITH,A.M.EDWARDS,A.BOCHKAREV,S.DHE-PAGANON, AUTHOR 3 STRUCTURAL GENOMICS CONSORTIUM (SGC) REVDAT 5 30-AUG-23 2O25 1 SEQADV REVDAT 4 13-JUL-11 2O25 1 VERSN REVDAT 3 24-FEB-09 2O25 1 VERSN REVDAT 2 27-MAR-07 2O25 1 REMARK REVDAT 1 16-JAN-07 2O25 0 JRNL AUTH J.R.WALKER,G.V.AVVAKUMOV,S.XUE,E.M.NEWMAN,F.MACKENZIE, JRNL AUTH 2 J.WEIGELT,M.SUNDSTROM,C.H.ARROWSMITH,A.M.EDWARDS, JRNL AUTH 3 A.BOCHKAREV,S.DHE-PAGANON JRNL TITL A NOVEL AND UNEXPECTED COMPLEX BETWEEN THE JRNL TITL 2 SUMO-1-CONJUGATING ENZYME UBC9 AND THE UBIQUITIN-CONJUGATING JRNL TITL 3 ENZYME E2-25 KDA JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 92.9 REMARK 3 NUMBER OF REFLECTIONS : 26281 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.231 REMARK 3 R VALUE (WORKING SET) : 0.228 REMARK 3 FREE R VALUE : 0.291 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1398 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.60 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.67 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1352 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 65.40 REMARK 3 BIN R VALUE (WORKING SET) : 0.3040 REMARK 3 BIN FREE R VALUE SET COUNT : 62 REMARK 3 BIN FREE R VALUE : 0.4190 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5628 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 39 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 34.04 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -2.31000 REMARK 3 B22 (A**2) : -2.91000 REMARK 3 B33 (A**2) : 4.42000 REMARK 3 B12 (A**2) : 0.79000 REMARK 3 B13 (A**2) : 1.94000 REMARK 3 B23 (A**2) : -1.17000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.783 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.367 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.292 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 28.352 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.940 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.897 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5792 ; 0.016 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 7876 ; 1.624 ; 1.971 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 709 ; 5.437 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 257 ;39.074 ;24.708 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1002 ;20.218 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 32 ;14.615 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 861 ; 0.100 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4410 ; 0.004 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 2570 ; 0.208 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 3917 ; 0.302 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 185 ; 0.151 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 50 ; 0.227 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 5 ; 0.091 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3691 ; 0.400 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 5815 ; 0.636 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2438 ; 1.068 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 2061 ; 1.693 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 24 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 21 REMARK 3 ORIGIN FOR THE GROUP (A): -18.9139 0.3563 12.2941 REMARK 3 T TENSOR REMARK 3 T11: 0.1785 T22: 0.3625 REMARK 3 T33: 0.4730 T12: 0.0508 REMARK 3 T13: 0.0146 T23: -0.0457 REMARK 3 L TENSOR REMARK 3 L11: 10.0076 L22: 6.2029 REMARK 3 L33: 4.3253 L12: 0.3489 REMARK 3 L13: 1.3023 L23: -0.1677 REMARK 3 S TENSOR REMARK 3 S11: -0.0091 S12: -0.4786 S13: 0.5677 REMARK 3 S21: 0.1328 S22: 0.0156 S23: 1.2579 REMARK 3 S31: -0.4948 S32: -1.2335 S33: -0.0064 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 22 A 44 REMARK 3 ORIGIN FOR THE GROUP (A): -10.3852 0.4589 6.4906 REMARK 3 T TENSOR REMARK 3 T11: 0.0618 T22: 0.1799 REMARK 3 T33: 0.1921 T12: -0.0100 REMARK 3 T13: -0.0285 T23: -0.0341 REMARK 3 L TENSOR REMARK 3 L11: 7.6106 L22: 14.5601 REMARK 3 L33: 6.2498 L12: -3.7365 REMARK 3 L13: 1.9199 L23: 0.7217 REMARK 3 S TENSOR REMARK 3 S11: -0.1831 S12: -0.0955 S13: 0.5845 REMARK 3 S21: 0.2689 S22: -0.2017 S23: 0.3029 REMARK 3 S31: -0.6657 S32: -0.0878 S33: 0.3848 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 45 A 94 REMARK 3 ORIGIN FOR THE GROUP (A): -11.2066 -8.3845 -2.9601 REMARK 3 T TENSOR REMARK 3 T11: 0.1493 T22: 0.1176 REMARK 3 T33: 0.2105 T12: -0.0221 REMARK 3 T13: -0.1012 T23: -0.0159 REMARK 3 L TENSOR REMARK 3 L11: 9.3865 L22: 3.8206 REMARK 3 L33: 3.1464 L12: -2.6427 REMARK 3 L13: -0.1380 L23: 0.1285 REMARK 3 S TENSOR REMARK 3 S11: -0.1011 S12: 0.0456 S13: -0.2515 REMARK 3 S21: -0.3201 S22: 0.0277 S23: 0.6271 REMARK 3 S31: 0.1224 S32: -0.2583 S33: 0.0734 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 95 A 156 REMARK 3 ORIGIN FOR THE GROUP (A): -8.2594 -16.1943 -4.2951 REMARK 3 T TENSOR REMARK 3 T11: 0.2490 T22: 0.2237 REMARK 3 T33: 0.4518 T12: 0.0152 REMARK 3 T13: -0.0825 T23: -0.0059 REMARK 3 L TENSOR REMARK 3 L11: 3.2629 L22: 1.1389 REMARK 3 L33: 3.9932 L12: 0.0299 REMARK 3 L13: -2.5669 L23: 0.8540 REMARK 3 S TENSOR REMARK 3 S11: -0.1489 S12: 0.5311 S13: -0.9744 REMARK 3 S21: -0.3597 S22: -0.0233 S23: 0.4075 REMARK 3 S31: 0.5098 S32: -0.3086 S33: 0.1722 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 157 A 188 REMARK 3 ORIGIN FOR THE GROUP (A): 9.5444 -12.5188 -15.9706 REMARK 3 T TENSOR REMARK 3 T11: 0.5764 T22: 0.4283 REMARK 3 T33: 0.3361 T12: 0.0062 REMARK 3 T13: 0.0539 T23: -0.1100 REMARK 3 L TENSOR REMARK 3 L11: 9.7375 L22: 11.1613 REMARK 3 L33: 6.1648 L12: -0.7461 REMARK 3 L13: -1.3499 L23: -2.1444 REMARK 3 S TENSOR REMARK 3 S11: -0.7638 S12: 0.1199 S13: -0.3634 REMARK 3 S21: -0.3085 S22: 0.6307 S23: -1.0262 REMARK 3 S31: -0.0421 S32: 0.6786 S33: 0.1331 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 189 A 199 REMARK 3 ORIGIN FOR THE GROUP (A): 6.0767 -14.1931 -26.4423 REMARK 3 T TENSOR REMARK 3 T11: 1.0530 T22: 0.7562 REMARK 3 T33: 0.4247 T12: -0.2647 REMARK 3 T13: -0.0083 T23: -0.1308 REMARK 3 L TENSOR REMARK 3 L11: 7.4483 L22: 26.3061 REMARK 3 L33: 25.1974 L12: -5.4215 REMARK 3 L13: -7.5435 L23: -9.0067 REMARK 3 S TENSOR REMARK 3 S11: -1.1401 S12: 2.6621 S13: -1.0077 REMARK 3 S21: -2.4557 S22: 1.2740 S23: 1.0313 REMARK 3 S31: 2.6105 S32: -1.1302 S33: -0.1338 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 3 B 26 REMARK 3 ORIGIN FOR THE GROUP (A): -31.9067 -32.0306 51.2295 REMARK 3 T TENSOR REMARK 3 T11: 1.7659 T22: 1.4326 REMARK 3 T33: 0.8903 T12: -0.5915 REMARK 3 T13: 0.5777 T23: -0.1559 REMARK 3 L TENSOR REMARK 3 L11: 6.4110 L22: 11.7684 REMARK 3 L33: 4.4981 L12: -0.5415 REMARK 3 L13: -4.9580 L23: 3.2084 REMARK 3 S TENSOR REMARK 3 S11: -0.1576 S12: -1.7714 S13: -0.2390 REMARK 3 S21: 2.1097 S22: 0.2337 S23: 0.1560 REMARK 3 S31: 0.0949 S32: -3.2382 S33: -0.0760 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 27 B 50 REMARK 3 ORIGIN FOR THE GROUP (A): -25.7198 -32.5125 42.9950 REMARK 3 T TENSOR REMARK 3 T11: 1.2804 T22: 0.6504 REMARK 3 T33: 0.4423 T12: -0.1711 REMARK 3 T13: 0.4203 T23: -0.0439 REMARK 3 L TENSOR REMARK 3 L11: 6.0751 L22: 14.8221 REMARK 3 L33: 21.4574 L12: 1.3099 REMARK 3 L13: 2.2754 L23: -16.8180 REMARK 3 S TENSOR REMARK 3 S11: 1.1729 S12: -1.0530 S13: -0.2568 REMARK 3 S21: 0.8499 S22: -0.4528 S23: 0.6180 REMARK 3 S31: 1.1934 S32: -0.0342 S33: -0.7201 REMARK 3 REMARK 3 TLS GROUP : 9 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 51 B 85 REMARK 3 ORIGIN FOR THE GROUP (A): -17.7879 -28.2114 43.1084 REMARK 3 T TENSOR REMARK 3 T11: 1.1995 T22: 0.4519 REMARK 3 T33: 0.2268 T12: -0.0511 REMARK 3 T13: 0.1303 T23: 0.0460 REMARK 3 L TENSOR REMARK 3 L11: 4.3501 L22: 8.6137 REMARK 3 L33: 9.0602 L12: 1.3614 REMARK 3 L13: -1.0581 L23: 1.0534 REMARK 3 S TENSOR REMARK 3 S11: -0.0153 S12: -1.3051 S13: -0.6015 REMARK 3 S21: 2.3614 S22: -0.2278 S23: 0.1180 REMARK 3 S31: 1.0399 S32: 0.4047 S33: 0.2431 REMARK 3 REMARK 3 TLS GROUP : 10 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 86 B 138 REMARK 3 ORIGIN FOR THE GROUP (A): -16.1103 -19.2930 43.1297 REMARK 3 T TENSOR REMARK 3 T11: 1.1870 T22: 0.5346 REMARK 3 T33: 0.3716 T12: -0.1733 REMARK 3 T13: 0.0027 T23: -0.1768 REMARK 3 L TENSOR REMARK 3 L11: 3.5691 L22: 2.2834 REMARK 3 L33: 12.1195 L12: -1.0250 REMARK 3 L13: -2.2639 L23: 1.8984 REMARK 3 S TENSOR REMARK 3 S11: 0.2345 S12: -1.1570 S13: 0.3707 REMARK 3 S21: 2.0978 S22: -0.4324 S23: 0.1349 REMARK 3 S31: -0.0028 S32: 0.2420 S33: 0.1979 REMARK 3 REMARK 3 TLS GROUP : 11 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 139 B 161 REMARK 3 ORIGIN FOR THE GROUP (A): -19.5182 -20.5378 24.3753 REMARK 3 T TENSOR REMARK 3 T11: 0.1217 T22: 0.0785 REMARK 3 T33: 0.1910 T12: -0.0139 REMARK 3 T13: 0.0370 T23: -0.0412 REMARK 3 L TENSOR REMARK 3 L11: 7.9586 L22: 5.7919 REMARK 3 L33: 6.1324 L12: 3.0966 REMARK 3 L13: 0.9171 L23: 1.9149 REMARK 3 S TENSOR REMARK 3 S11: -0.2541 S12: 0.4267 S13: 0.7810 REMARK 3 S21: -0.1127 S22: 0.2708 S23: 0.6139 REMARK 3 S31: -0.6025 S32: -0.2733 S33: -0.0166 REMARK 3 REMARK 3 TLS GROUP : 12 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 162 B 199 REMARK 3 ORIGIN FOR THE GROUP (A): -7.4312 -24.7725 18.3986 REMARK 3 T TENSOR REMARK 3 T11: -0.0382 T22: 0.0836 REMARK 3 T33: 0.2069 T12: -0.0030 REMARK 3 T13: 0.0457 T23: 0.0496 REMARK 3 L TENSOR REMARK 3 L11: 9.1091 L22: 13.0863 REMARK 3 L33: 6.0216 L12: -6.1026 REMARK 3 L13: -1.9366 L23: 0.2479 REMARK 3 S TENSOR REMARK 3 S11: -0.0928 S12: 0.0801 S13: -0.1872 REMARK 3 S21: 0.1636 S22: 0.0109 S23: -0.5594 REMARK 3 S31: 0.0870 S32: 0.2161 S33: 0.0818 REMARK 3 REMARK 3 TLS GROUP : 13 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 2 C 19 REMARK 3 ORIGIN FOR THE GROUP (A): 4.5427 -27.9401 10.1841 REMARK 3 T TENSOR REMARK 3 T11: 0.0669 T22: 0.0357 REMARK 3 T33: 0.3385 T12: 0.0496 REMARK 3 T13: 0.1303 T23: 0.0676 REMARK 3 L TENSOR REMARK 3 L11: 16.0630 L22: 5.0128 REMARK 3 L33: 13.3567 L12: -0.7039 REMARK 3 L13: 4.7912 L23: 0.7325 REMARK 3 S TENSOR REMARK 3 S11: -0.1268 S12: 0.1516 S13: 1.2919 REMARK 3 S21: -0.2055 S22: -0.0513 S23: 0.0473 REMARK 3 S31: -0.1287 S32: -0.1964 S33: 0.1782 REMARK 3 REMARK 3 TLS GROUP : 14 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 20 C 37 REMARK 3 ORIGIN FOR THE GROUP (A): 14.0044 -30.6158 5.7743 REMARK 3 T TENSOR REMARK 3 T11: 0.1559 T22: 0.1313 REMARK 3 T33: 0.2846 T12: -0.0328 REMARK 3 T13: 0.0547 T23: 0.0951 REMARK 3 L TENSOR REMARK 3 L11: 6.3102 L22: 4.0045 REMARK 3 L33: 10.6489 L12: 0.8834 REMARK 3 L13: -1.1985 L23: 1.0702 REMARK 3 S TENSOR REMARK 3 S11: -0.0962 S12: 1.3006 S13: 0.7720 REMARK 3 S21: -0.6977 S22: 0.1759 S23: 0.0527 REMARK 3 S31: -1.7650 S32: 0.5161 S33: -0.0796 REMARK 3 REMARK 3 TLS GROUP : 15 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 38 C 63 REMARK 3 ORIGIN FOR THE GROUP (A): 17.6024 -39.7212 13.2537 REMARK 3 T TENSOR REMARK 3 T11: -0.0214 T22: 0.0497 REMARK 3 T33: 0.1618 T12: -0.0092 REMARK 3 T13: 0.0366 T23: -0.0376 REMARK 3 L TENSOR REMARK 3 L11: 6.8645 L22: 6.9870 REMARK 3 L33: 0.9371 L12: -1.9832 REMARK 3 L13: -0.1213 L23: -2.4138 REMARK 3 S TENSOR REMARK 3 S11: 0.0148 S12: -0.2243 S13: 0.5087 REMARK 3 S21: 0.0514 S22: 0.0533 S23: -0.4534 REMARK 3 S31: -0.4194 S32: 0.0283 S33: -0.0681 REMARK 3 REMARK 3 TLS GROUP : 16 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 64 C 96 REMARK 3 ORIGIN FOR THE GROUP (A): 9.4993 -46.5944 9.5660 REMARK 3 T TENSOR REMARK 3 T11: -0.0459 T22: 0.0516 REMARK 3 T33: 0.1247 T12: -0.0057 REMARK 3 T13: -0.0097 T23: 0.0072 REMARK 3 L TENSOR REMARK 3 L11: 6.8439 L22: 5.9812 REMARK 3 L33: 1.1883 L12: -4.6888 REMARK 3 L13: -0.4748 L23: 0.5285 REMARK 3 S TENSOR REMARK 3 S11: 0.1528 S12: 0.2273 S13: -0.5164 REMARK 3 S21: -0.2643 S22: 0.0881 S23: 0.3294 REMARK 3 S31: -0.0536 S32: -0.0860 S33: -0.2408 REMARK 3 REMARK 3 TLS GROUP : 17 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 97 C 124 REMARK 3 ORIGIN FOR THE GROUP (A): 6.4990 -43.6429 18.0312 REMARK 3 T TENSOR REMARK 3 T11: 0.0213 T22: 0.1103 REMARK 3 T33: 0.0309 T12: -0.0230 REMARK 3 T13: 0.0497 T23: 0.0181 REMARK 3 L TENSOR REMARK 3 L11: 11.1516 L22: 6.7333 REMARK 3 L33: 1.2448 L12: -3.2340 REMARK 3 L13: 0.6825 L23: -2.4824 REMARK 3 S TENSOR REMARK 3 S11: 0.0686 S12: -0.3779 S13: -0.5277 REMARK 3 S21: 0.4632 S22: 0.0085 S23: 0.4309 REMARK 3 S31: 0.2795 S32: -0.1024 S33: -0.0771 REMARK 3 REMARK 3 TLS GROUP : 18 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 125 C 158 REMARK 3 ORIGIN FOR THE GROUP (A): 23.3954 -54.6622 17.6672 REMARK 3 T TENSOR REMARK 3 T11: 0.0219 T22: 0.2112 REMARK 3 T33: 0.1873 T12: 0.0565 REMARK 3 T13: -0.1316 T23: -0.0153 REMARK 3 L TENSOR REMARK 3 L11: 10.5019 L22: 9.3203 REMARK 3 L33: 5.6433 L12: 2.5198 REMARK 3 L13: -0.6765 L23: -0.1994 REMARK 3 S TENSOR REMARK 3 S11: 0.2533 S12: -0.5682 S13: -0.7367 REMARK 3 S21: 0.6622 S22: -0.2200 S23: -0.8690 REMARK 3 S31: 0.1926 S32: 0.1117 S33: -0.0333 REMARK 3 REMARK 3 TLS GROUP : 19 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 2 D 18 REMARK 3 ORIGIN FOR THE GROUP (A): 14.8628 -9.8162 -33.0790 REMARK 3 T TENSOR REMARK 3 T11: 0.9902 T22: 0.6807 REMARK 3 T33: 0.4260 T12: -0.1530 REMARK 3 T13: 0.3154 T23: -0.0984 REMARK 3 L TENSOR REMARK 3 L11: 8.5253 L22: 3.5988 REMARK 3 L33: 11.2021 L12: -4.6355 REMARK 3 L13: -0.2362 L23: -3.3461 REMARK 3 S TENSOR REMARK 3 S11: -0.8210 S12: 0.6989 S13: -0.1451 REMARK 3 S21: -0.7810 S22: -0.3707 S23: -0.1023 REMARK 3 S31: 1.0867 S32: 0.3465 S33: 1.1917 REMARK 3 REMARK 3 TLS GROUP : 20 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 19 D 39 REMARK 3 ORIGIN FOR THE GROUP (A): 15.9998 -8.3000 -42.5902 REMARK 3 T TENSOR REMARK 3 T11: 1.1288 T22: 0.6290 REMARK 3 T33: 0.4871 T12: -0.0220 REMARK 3 T13: 0.0535 T23: -0.1444 REMARK 3 L TENSOR REMARK 3 L11: 17.3459 L22: 8.6344 REMARK 3 L33: 11.6977 L12: 7.9775 REMARK 3 L13: -5.4033 L23: 2.5006 REMARK 3 S TENSOR REMARK 3 S11: 0.1482 S12: -0.4664 S13: -1.3644 REMARK 3 S21: -0.7267 S22: -0.3528 S23: -0.6436 REMARK 3 S31: 1.3453 S32: 0.0622 S33: 0.2045 REMARK 3 REMARK 3 TLS GROUP : 21 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 40 D 57 REMARK 3 ORIGIN FOR THE GROUP (A): 4.1570 1.7429 -47.5915 REMARK 3 T TENSOR REMARK 3 T11: 1.4112 T22: 1.1643 REMARK 3 T33: 0.5901 T12: -0.2296 REMARK 3 T13: -0.0529 T23: 0.0255 REMARK 3 L TENSOR REMARK 3 L11: 0.9682 L22: 8.6238 REMARK 3 L33: 4.7020 L12: -2.2937 REMARK 3 L13: 1.7851 L23: -3.0658 REMARK 3 S TENSOR REMARK 3 S11: -0.8374 S12: 1.4950 S13: 0.2300 REMARK 3 S21: -1.0200 S22: 0.4710 S23: 0.8644 REMARK 3 S31: 0.4263 S32: -1.0500 S33: 0.3664 REMARK 3 REMARK 3 TLS GROUP : 22 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 58 D 77 REMARK 3 ORIGIN FOR THE GROUP (A): 16.8040 2.9317 -37.3355 REMARK 3 T TENSOR REMARK 3 T11: 0.7562 T22: 0.4837 REMARK 3 T33: 0.3956 T12: -0.1218 REMARK 3 T13: 0.1325 T23: -0.0073 REMARK 3 L TENSOR REMARK 3 L11: 8.1168 L22: 7.0313 REMARK 3 L33: 15.1389 L12: -5.7887 REMARK 3 L13: -4.1286 L23: -3.2080 REMARK 3 S TENSOR REMARK 3 S11: 0.2407 S12: 0.0616 S13: 0.4261 REMARK 3 S21: -0.4221 S22: -0.4569 S23: -0.2798 REMARK 3 S31: 0.3207 S32: 0.5838 S33: 0.2162 REMARK 3 REMARK 3 TLS GROUP : 23 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 78 D 125 REMARK 3 ORIGIN FOR THE GROUP (A): 8.1846 8.6220 -37.7472 REMARK 3 T TENSOR REMARK 3 T11: 0.8942 T22: 0.6962 REMARK 3 T33: 0.4399 T12: 0.0170 REMARK 3 T13: -0.0141 T23: 0.0006 REMARK 3 L TENSOR REMARK 3 L11: 4.3794 L22: 11.2472 REMARK 3 L33: 4.3846 L12: -0.0713 REMARK 3 L13: -2.2493 L23: -1.8030 REMARK 3 S TENSOR REMARK 3 S11: 0.1440 S12: 0.5119 S13: 0.4148 REMARK 3 S21: -0.3108 S22: -0.1812 S23: 0.8529 REMARK 3 S31: -0.4149 S32: -0.7093 S33: 0.0372 REMARK 3 REMARK 3 TLS GROUP : 24 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 126 D 157 REMARK 3 ORIGIN FOR THE GROUP (A): 2.8252 16.7122 -50.8278 REMARK 3 T TENSOR REMARK 3 T11: 1.6440 T22: 1.4891 REMARK 3 T33: 0.6011 T12: 0.1373 REMARK 3 T13: -0.1107 T23: 0.2019 REMARK 3 L TENSOR REMARK 3 L11: 8.8503 L22: 1.0482 REMARK 3 L33: 4.6038 L12: 2.9520 REMARK 3 L13: 4.1686 L23: 0.9809 REMARK 3 S TENSOR REMARK 3 S11: -0.1161 S12: 0.9912 S13: -0.1501 REMARK 3 S21: 0.6363 S22: -0.5739 S23: 1.0667 REMARK 3 S31: -0.5890 S32: -0.1662 S33: 0.6900 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: ATOM RECORD CONTAINS SUM OF TLS AND REMARK 3 RESIDUAL B FACTORS. ANISOU RECORD CONTAINS SUM OF TLS AND REMARK 3 RESIDUAL U FACTORS. HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 2O25 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 30-NOV-06. REMARK 100 THE DEPOSITION ID IS D_1000040591. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 07-MAY-06 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : CHESS REMARK 200 BEAMLINE : A1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.91841 REMARK 200 MONOCHROMATOR : HORIZONTAL FOCUSING 5.05 REMARK 200 ASYMMETRIC CUT SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 27651 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.600 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 93.3 REMARK 200 DATA REDUNDANCY : 1.900 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.05100 REMARK 200 FOR THE DATA SET : 13.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.64 REMARK 200 COMPLETENESS FOR SHELL (%) : 70.8 REMARK 200 DATA REDUNDANCY IN SHELL : 1.70 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.29300 REMARK 200 FOR SHELL : 2.170 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRIES 1YLA AND 1A3S REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 59.92 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.07 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: THE PROTEIN COMPLEX (1:1) WAS REMARK 280 DISSOLVED AT 26 MG/ML IN 20 MM TRIS-HCL, PH 8.0, 5% GLYCEROL, 2 REMARK 280 MM DTT. HANGING DROPS (2 MICROL + 2 MICROL), ROOM TEMPERATURE, REMARK 280 WELL SOLUTION: 16% PEG MME 5000, 0.1 M BIS-TRIS, PH 6.0, 1 MM REMARK 280 DTT, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 298.0K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 THIS ENTRY CONTAINS THE CRYSTALLOGRAPHIC ASYMMETRIC UNIT REMARK 300 WHICH CONSISTS OF 4 CHAIN(S). AUTHORS STATE THAT THE REMARK 300 BIOLOGICAL UNIT OF THIS PROTEIN IS UNKNOWN. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -1 REMARK 465 SER A 0 REMARK 465 ASN A 200 REMARK 465 GLY B -1 REMARK 465 SER B 0 REMARK 465 MET B 1 REMARK 465 ALA B 2 REMARK 465 ASN B 200 REMARK 465 GLY C -1 REMARK 465 SER C 0 REMARK 465 MET C 1 REMARK 465 GLY D -1 REMARK 465 SER D 0 REMARK 465 MET D 1 REMARK 465 SER D 158 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG B 40 CG CD NE CZ NH1 NH2 REMARK 470 LYS D 18 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU B 34 CD GLU B 34 OE1 0.225 REMARK 500 GLU B 34 CD GLU B 34 OE2 0.204 REMARK 500 GLU B 64 CD GLU B 64 OE1 0.383 REMARK 500 GLU B 64 CD GLU B 64 OE2 0.160 REMARK 500 ARG B 107 NE ARG B 107 CZ 0.084 REMARK 500 ARG B 107 CZ ARG B 107 NH1 0.164 REMARK 500 SER B 158 CB SER B 158 OG 0.091 REMARK 500 GLU D 132 CD GLU D 132 OE1 0.128 REMARK 500 GLU D 132 CD GLU D 132 OE2 0.088 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 GLU B 34 OE1 - CD - OE2 ANGL. DEV. = 9.9 DEGREES REMARK 500 ARG B 107 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 ARG B 107 NE - CZ - NH2 ANGL. DEV. = -4.6 DEGREES REMARK 500 LEU C 119 CA - CB - CG ANGL. DEV. = 16.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 3 -60.55 -26.49 REMARK 500 VAL A 32 -69.28 -107.73 REMARK 500 LYS A 97 -108.77 -138.54 REMARK 500 ALA A 119 87.18 -155.23 REMARK 500 GLU A 121 73.69 -119.92 REMARK 500 SER A 158 -147.97 -91.94 REMARK 500 LEU A 198 -71.44 -83.59 REMARK 500 VAL B 6 -36.88 -133.72 REMARK 500 ILE B 9 -59.48 -29.29 REMARK 500 ARG B 11 -6.39 -58.42 REMARK 500 VAL B 32 -67.92 -91.74 REMARK 500 VAL B 87 -63.54 -101.87 REMARK 500 LYS B 97 -73.10 -105.81 REMARK 500 ASP B 98 1.19 -151.60 REMARK 500 ALA B 119 83.20 -159.16 REMARK 500 ALA C 26 101.11 -170.50 REMARK 500 ASP C 33 14.84 -69.54 REMARK 500 PRO C 52 1.14 -69.44 REMARK 500 ILE C 96 -4.01 -52.00 REMARK 500 LYS C 101 -119.89 -117.07 REMARK 500 ALA D 26 116.98 -163.73 REMARK 500 ASP D 33 80.01 67.01 REMARK 500 THR D 35 -42.92 -136.49 REMARK 500 TYR D 68 130.62 -37.42 REMARK 500 PRO D 88 -5.63 -57.18 REMARK 500 LYS D 101 -84.48 -122.83 REMARK 500 THR D 135 -39.10 -39.18 REMARK 500 GLN D 139 -44.35 -146.64 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1A3S RELATED DB: PDB REMARK 900 HUMAN UBC9 REMARK 900 RELATED ID: 1YLA RELATED DB: PDB REMARK 900 UBIQUITIN-CONJUGATING ENZYME E2-25 KDA DBREF 2O25 A 1 200 UNP P61086 UBC1_HUMAN 0 199 DBREF 2O25 B 1 200 UNP P61086 UBC1_HUMAN 0 199 DBREF 2O25 C 1 158 UNP P63279 UBC9_HUMAN 1 158 DBREF 2O25 D 1 158 UNP P63279 UBC9_HUMAN 1 158 SEQADV 2O25 GLY A -1 UNP P61086 CLONING ARTIFACT SEQADV 2O25 SER A 0 UNP P61086 CLONING ARTIFACT SEQADV 2O25 GLY B -1 UNP P61086 CLONING ARTIFACT SEQADV 2O25 SER B 0 UNP P61086 CLONING ARTIFACT SEQADV 2O25 GLY C -1 UNP P63279 CLONING ARTIFACT SEQADV 2O25 SER C 0 UNP P63279 CLONING ARTIFACT SEQADV 2O25 GLY D -1 UNP P63279 CLONING ARTIFACT SEQADV 2O25 SER D 0 UNP P63279 CLONING ARTIFACT SEQRES 1 A 202 GLY SER MET ALA ASN ILE ALA VAL GLN ARG ILE LYS ARG SEQRES 2 A 202 GLU PHE LYS GLU VAL LEU LYS SER GLU GLU THR SER LYS SEQRES 3 A 202 ASN GLN ILE LYS VAL ASP LEU VAL ASP GLU ASN PHE THR SEQRES 4 A 202 GLU LEU ARG GLY GLU ILE ALA GLY PRO PRO ASP THR PRO SEQRES 5 A 202 TYR GLU GLY GLY ARG TYR GLN LEU GLU ILE LYS ILE PRO SEQRES 6 A 202 GLU THR TYR PRO PHE ASN PRO PRO LYS VAL ARG PHE ILE SEQRES 7 A 202 THR LYS ILE TRP HIS PRO ASN ILE SER SER VAL THR GLY SEQRES 8 A 202 ALA ILE CYS LEU ASP ILE LEU LYS ASP GLN TRP ALA ALA SEQRES 9 A 202 ALA MET THR LEU ARG THR VAL LEU LEU SER LEU GLN ALA SEQRES 10 A 202 LEU LEU ALA ALA ALA GLU PRO ASP ASP PRO GLN ASP ALA SEQRES 11 A 202 VAL VAL ALA ASN GLN TYR LYS GLN ASN PRO GLU MET PHE SEQRES 12 A 202 LYS GLN THR ALA ARG LEU TRP ALA HIS VAL TYR ALA GLY SEQRES 13 A 202 ALA PRO VAL SER SER PRO GLU TYR THR LYS LYS ILE GLU SEQRES 14 A 202 ASN LEU CYS ALA MET GLY PHE ASP ARG ASN ALA VAL ILE SEQRES 15 A 202 VAL ALA LEU SER SER LYS SER TRP ASP VAL GLU THR ALA SEQRES 16 A 202 THR GLU LEU LEU LEU SER ASN SEQRES 1 B 202 GLY SER MET ALA ASN ILE ALA VAL GLN ARG ILE LYS ARG SEQRES 2 B 202 GLU PHE LYS GLU VAL LEU LYS SER GLU GLU THR SER LYS SEQRES 3 B 202 ASN GLN ILE LYS VAL ASP LEU VAL ASP GLU ASN PHE THR SEQRES 4 B 202 GLU LEU ARG GLY GLU ILE ALA GLY PRO PRO ASP THR PRO SEQRES 5 B 202 TYR GLU GLY GLY ARG TYR GLN LEU GLU ILE LYS ILE PRO SEQRES 6 B 202 GLU THR TYR PRO PHE ASN PRO PRO LYS VAL ARG PHE ILE SEQRES 7 B 202 THR LYS ILE TRP HIS PRO ASN ILE SER SER VAL THR GLY SEQRES 8 B 202 ALA ILE CYS LEU ASP ILE LEU LYS ASP GLN TRP ALA ALA SEQRES 9 B 202 ALA MET THR LEU ARG THR VAL LEU LEU SER LEU GLN ALA SEQRES 10 B 202 LEU LEU ALA ALA ALA GLU PRO ASP ASP PRO GLN ASP ALA SEQRES 11 B 202 VAL VAL ALA ASN GLN TYR LYS GLN ASN PRO GLU MET PHE SEQRES 12 B 202 LYS GLN THR ALA ARG LEU TRP ALA HIS VAL TYR ALA GLY SEQRES 13 B 202 ALA PRO VAL SER SER PRO GLU TYR THR LYS LYS ILE GLU SEQRES 14 B 202 ASN LEU CYS ALA MET GLY PHE ASP ARG ASN ALA VAL ILE SEQRES 15 B 202 VAL ALA LEU SER SER LYS SER TRP ASP VAL GLU THR ALA SEQRES 16 B 202 THR GLU LEU LEU LEU SER ASN SEQRES 1 C 160 GLY SER MET SER GLY ILE ALA LEU SER ARG LEU ALA GLN SEQRES 2 C 160 GLU ARG LYS ALA TRP ARG LYS ASP HIS PRO PHE GLY PHE SEQRES 3 C 160 VAL ALA VAL PRO THR LYS ASN PRO ASP GLY THR MET ASN SEQRES 4 C 160 LEU MET ASN TRP GLU CYS ALA ILE PRO GLY LYS LYS GLY SEQRES 5 C 160 THR PRO TRP GLU GLY GLY LEU PHE LYS LEU ARG MET LEU SEQRES 6 C 160 PHE LYS ASP ASP TYR PRO SER SER PRO PRO LYS CYS LYS SEQRES 7 C 160 PHE GLU PRO PRO LEU PHE HIS PRO ASN VAL TYR PRO SER SEQRES 8 C 160 GLY THR VAL CYS LEU SER ILE LEU GLU GLU ASP LYS ASP SEQRES 9 C 160 TRP ARG PRO ALA ILE THR ILE LYS GLN ILE LEU LEU GLY SEQRES 10 C 160 ILE GLN GLU LEU LEU ASN GLU PRO ASN ILE GLN ASP PRO SEQRES 11 C 160 ALA GLN ALA GLU ALA TYR THR ILE TYR CYS GLN ASN ARG SEQRES 12 C 160 VAL GLU TYR GLU LYS ARG VAL ARG ALA GLN ALA LYS LYS SEQRES 13 C 160 PHE ALA PRO SER SEQRES 1 D 160 GLY SER MET SER GLY ILE ALA LEU SER ARG LEU ALA GLN SEQRES 2 D 160 GLU ARG LYS ALA TRP ARG LYS ASP HIS PRO PHE GLY PHE SEQRES 3 D 160 VAL ALA VAL PRO THR LYS ASN PRO ASP GLY THR MET ASN SEQRES 4 D 160 LEU MET ASN TRP GLU CYS ALA ILE PRO GLY LYS LYS GLY SEQRES 5 D 160 THR PRO TRP GLU GLY GLY LEU PHE LYS LEU ARG MET LEU SEQRES 6 D 160 PHE LYS ASP ASP TYR PRO SER SER PRO PRO LYS CYS LYS SEQRES 7 D 160 PHE GLU PRO PRO LEU PHE HIS PRO ASN VAL TYR PRO SER SEQRES 8 D 160 GLY THR VAL CYS LEU SER ILE LEU GLU GLU ASP LYS ASP SEQRES 9 D 160 TRP ARG PRO ALA ILE THR ILE LYS GLN ILE LEU LEU GLY SEQRES 10 D 160 ILE GLN GLU LEU LEU ASN GLU PRO ASN ILE GLN ASP PRO SEQRES 11 D 160 ALA GLN ALA GLU ALA TYR THR ILE TYR CYS GLN ASN ARG SEQRES 12 D 160 VAL GLU TYR GLU LYS ARG VAL ARG ALA GLN ALA LYS LYS SEQRES 13 D 160 PHE ALA PRO SER FORMUL 5 HOH *39(H2 O) HELIX 1 1 ALA A 2 LYS A 18 1 17 HELIX 2 2 SER A 19 LYS A 24 1 6 HELIX 3 3 LEU A 93 LYS A 97 5 5 HELIX 4 4 THR A 105 LEU A 117 1 13 HELIX 5 5 ASP A 127 ASN A 137 1 11 HELIX 6 6 ASN A 137 GLY A 154 1 18 HELIX 7 7 SER A 159 CYS A 170 1 12 HELIX 8 8 ASP A 175 LYS A 186 1 12 HELIX 9 9 ASP A 189 SER A 199 1 11 HELIX 10 10 VAL B 6 GLU B 12 1 7 HELIX 11 11 GLU B 12 SER B 19 1 8 HELIX 12 12 LEU B 93 LYS B 97 5 5 HELIX 13 13 THR B 105 ALA B 119 1 15 HELIX 14 14 ASP B 127 ASN B 137 1 11 HELIX 15 15 ASN B 137 ALA B 153 1 17 HELIX 16 16 SER B 159 MET B 172 1 14 HELIX 17 17 ASP B 175 LYS B 186 1 12 HELIX 18 18 ASP B 189 LEU B 198 1 10 HELIX 19 19 GLY C 3 ASP C 19 1 17 HELIX 20 20 LEU C 94 GLU C 98 5 5 HELIX 21 21 THR C 108 GLU C 122 1 15 HELIX 22 22 GLN C 130 ASN C 140 1 11 HELIX 23 23 ASN C 140 PHE C 155 1 16 HELIX 24 24 SER D 2 ASP D 19 1 18 HELIX 25 25 LEU D 94 GLU D 98 5 5 HELIX 26 26 THR D 108 GLU D 122 1 15 HELIX 27 27 GLN D 130 CYS D 138 1 9 HELIX 28 28 ASN D 140 LYS D 154 1 15 SHEET 1 A 4 ILE A 27 LEU A 31 0 SHEET 2 A 4 GLU A 38 ALA A 44 -1 O ARG A 40 N ASP A 30 SHEET 3 A 4 ARG A 55 LYS A 61 -1 O LEU A 58 N GLY A 41 SHEET 4 A 4 LYS A 72 PHE A 75 -1 O LYS A 72 N LYS A 61 SHEET 1 B 4 ILE B 27 LEU B 31 0 SHEET 2 B 4 GLU B 38 ALA B 44 -1 O ARG B 40 N ASP B 30 SHEET 3 B 4 ARG B 55 LYS B 61 -1 O LEU B 58 N GLY B 41 SHEET 4 B 4 LYS B 72 PHE B 75 -1 O ARG B 74 N GLU B 59 SHEET 1 C 4 VAL C 25 LYS C 30 0 SHEET 2 C 4 MET C 36 PRO C 46 -1 O ASN C 37 N THR C 29 SHEET 3 C 4 LEU C 57 LEU C 63 -1 O PHE C 58 N ILE C 45 SHEET 4 C 4 LYS C 74 PHE C 77 -1 O LYS C 76 N ARG C 61 SHEET 1 D 4 VAL D 25 PRO D 28 0 SHEET 2 D 4 ASN D 40 PRO D 46 -1 O GLU D 42 N VAL D 27 SHEET 3 D 4 LEU D 57 LEU D 63 -1 O PHE D 58 N ILE D 45 SHEET 4 D 4 LYS D 74 PHE D 77 -1 O LYS D 76 N ARG D 61 CISPEP 1 TYR A 66 PRO A 67 0 10.70 CISPEP 2 TYR B 66 PRO B 67 0 -1.50 CISPEP 3 TYR C 68 PRO C 69 0 4.66 CISPEP 4 GLU C 78 PRO C 79 0 -0.52 CISPEP 5 GLY D 34 THR D 35 0 -0.74 CISPEP 6 THR D 35 MET D 36 0 7.20 CISPEP 7 TYR D 68 PRO D 69 0 9.89 CISPEP 8 GLU D 78 PRO D 79 0 -0.79 CRYST1 41.874 68.498 91.277 85.05 80.85 75.83 P 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.023881 -0.006031 -0.003554 0.00000 SCALE2 0.000000 0.015057 -0.000747 0.00000 SCALE3 0.000000 0.000000 0.011111 0.00000