HEADER STRUCTURAL GENOMICS, UNKNOWN FUNCTION 30-NOV-06 2O34 TITLE CRYSTAL STRUCTURE OF PROTEIN DVU1097 FROM DESULFOVIBRIO VULGARIS TITLE 2 HILDENBOROUGH, PFAM DUF375 COMPND MOL_ID: 1; COMPND 2 MOLECULE: HYPOTHETICAL PROTEIN; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: DESULFOVIBRIO VULGARIS; SOURCE 3 ORGANISM_TAXID: 881; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS STRUCTURAL GENOMICS, HYPOTHETICAL PROTEIN, PSI, PROTEIN STRUCTURE KEYWDS 2 INITIATIVE, NEW YORK SGX RESEARCH CENTER FOR STRUCTURAL GENOMICS, KEYWDS 3 NYSGXRC, UNKNOWN FUNCTION EXPDTA X-RAY DIFFRACTION AUTHOR V.N.MALASHKEVICH,R.TORO,J.M.SAUDER,K.D.SCHWINN,D.A.THOMPSON, AUTHOR 2 M.E.RUTTER,M.DICKEY,C.GROSHONG,K.T.BAIN,J.M.ADAMS,C.REYES,I.ROONEY, AUTHOR 3 A.POWELL,A.BOICE,T.GHEYI,S.OZYURT,S.ATWELL,S.R.WASSERMAN,S.EMTAGE, AUTHOR 4 S.K.BURLEY,S.C.ALMO,NEW YORK SGX RESEARCH CENTER FOR STRUCTURAL AUTHOR 5 GENOMICS (NYSGXRC) REVDAT 9 06-NOV-24 2O34 1 REMARK REVDAT 8 27-DEC-23 2O34 1 REMARK REVDAT 7 03-FEB-21 2O34 1 AUTHOR JRNL REMARK SEQADV REVDAT 7 2 1 LINK REVDAT 6 24-JUL-19 2O34 1 REMARK LINK REVDAT 5 14-NOV-18 2O34 1 AUTHOR REVDAT 4 18-OCT-17 2O34 1 REMARK REVDAT 3 24-FEB-09 2O34 1 VERSN REVDAT 2 19-DEC-06 2O34 1 KEYWDS AUTHOR REMARK REVDAT 1 12-DEC-06 2O34 0 JRNL AUTH V.N.MALASHKEVICH,R.TORO,J.M.SAUDER,D.A.THOMPSON,M.E.RUTTER, JRNL AUTH 2 M.DICKEY,C.GROSHONG,K.T.BAIN,J.M.ADAMS,C.REYES,I.ROONEY, JRNL AUTH 3 A.POWELL,A.BOICE,T.GHEYI,S.OZYURT,S.ATWELL,S.R.WASSERMAN, JRNL AUTH 4 K.D.SCHWINN,S.EMTAGE,S.K.BURLEY,S.C.ALMO JRNL TITL CRYSTAL STRUCTURE OF THE HYPOTHETICAL PROTEIN FROM JRNL TITL 2 DESULFOVIBRIO VULGARIS HILDENBOROUGH JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.95 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.95 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.98 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : NULL REMARK 3 NUMBER OF REFLECTIONS : 31401 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.213 REMARK 3 R VALUE (WORKING SET) : 0.210 REMARK 3 FREE R VALUE : 0.273 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.200 REMARK 3 FREE R VALUE TEST SET COUNT : 1717 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.95 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.00 REMARK 3 REFLECTION IN BIN (WORKING SET) : 108 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 2.97 REMARK 3 BIN R VALUE (WORKING SET) : 0.2990 REMARK 3 BIN FREE R VALUE SET COUNT : 9 REMARK 3 BIN FREE R VALUE : 0.3160 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3553 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 3 REMARK 3 SOLVENT ATOMS : 374 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 49.78 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.00000 REMARK 3 B22 (A**2) : 0.01000 REMARK 3 B33 (A**2) : 0.00000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.248 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.228 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.126 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.412 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.945 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.904 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3625 ; 0.013 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4929 ; 1.483 ; 1.966 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 482 ; 6.598 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 154 ;29.640 ;22.403 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 566 ;18.030 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 42 ;17.905 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 572 ; 0.106 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2778 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1725 ; 0.225 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 2446 ; 0.305 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 246 ; 0.167 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): 12 ; 0.114 ; 0.200 REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 66 ; 0.235 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 8 ; 0.173 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2378 ; 0.966 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3791 ; 1.791 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1276 ; 2.285 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1136 ; 3.949 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. HIGHLY ANISOTROPIC DIFFRACTION DATA WERE CORRECTED REMARK 3 USING ELIPSOIDAL TRUNCATION AND ANISOTROPIC SCALING REMARK 4 REMARK 4 2O34 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 01-DEC-06. REMARK 100 THE DEPOSITION ID IS D_1000040626. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 24-NOV-06 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 4.60 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 31-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97961 REMARK 200 MONOCHROMATOR : SGX-CAT REMARK 200 OPTICS : SGX-CAT REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MAR CCD 165 MM REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO, HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 55000 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.980 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.3 REMARK 200 DATA REDUNDANCY : 4.800 REMARK 200 R MERGE (I) : 0.10600 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 8.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.98 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.07 REMARK 200 COMPLETENESS FOR SHELL (%) : 63.5 REMARK 200 DATA REDUNDANCY IN SHELL : 3.10 REMARK 200 R MERGE FOR SHELL (I) : 0.67400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SHELXD REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 66.02 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.62 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 2.0M SODIUM FORMATE, 0.1M NA ACETATE, REMARK 280 PH 4.6, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 295K, PH 4.60 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 30.24000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 75.58500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 40.74000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 75.58500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 30.24000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 40.74000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: DIMER. REMARK 300 REMARK 300 REMARK 300 REMARK 300 THE SECOND PART OF THE BIOLOGICAL ASSEMBLY (SUBUNIT B) IS RELATED REMARK 300 BY THE TWO FOLD AXIS WITH SUBUNIT A: X+1/2,-Y+1/2,-Z + (0 0 0) REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA A 249 REMARK 465 SER B 0 REMARK 465 LEU B 1 REMARK 465 PRO B 2 REMARK 465 MSE B 3 REMARK 465 GLN B 4 REMARK 465 HIS B 5 REMARK 465 VAL B 6 REMARK 465 HIS B 7 REMARK 465 THR B 8 REMARK 465 SER B 9 REMARK 465 PRO B 10 REMARK 465 VAL B 11 REMARK 465 ARG B 12 REMARK 465 ASP B 13 REMARK 465 TYR B 14 REMARK 465 ARG B 15 REMARK 465 ASN B 16 REMARK 465 ARG B 17 REMARK 465 CYS B 18 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 SER A 0 OG REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH B 504 O HOH B 627 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 MSE A 3 74.21 66.59 REMARK 500 TYR A 14 13.99 -64.55 REMARK 500 CYS A 18 55.14 25.77 REMARK 500 ALA A 19 -145.98 -97.67 REMARK 500 ARG A 20 -77.37 43.64 REMARK 500 GLU A 32 -114.17 51.41 REMARK 500 SER A 120 75.39 -153.05 REMARK 500 ALA A 209 -48.81 -28.27 REMARK 500 GLU B 32 -127.06 46.79 REMARK 500 SER B 120 80.21 -154.82 REMARK 500 PRO B 147 113.06 -3.58 REMARK 500 ALA B 148 -83.09 64.60 REMARK 500 ALA B 159 121.41 -39.20 REMARK 500 ILE B 173 -50.03 -124.46 REMARK 500 LEU B 177 73.48 15.97 REMARK 500 SER B 178 -146.05 -116.67 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 503 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER A 0 O REMARK 620 2 PRO A 2 O 75.7 REMARK 620 3 MSE A 3 O 87.9 79.3 REMARK 620 4 GLU A 126 OE2 88.4 160.1 88.3 REMARK 620 5 GLY A 128 O 152.8 95.3 116.1 104.2 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 501 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ALA A 102 O REMARK 620 2 ASP A 196 O 85.7 REMARK 620 3 ASP A 196 OD1 79.9 74.8 REMARK 620 4 THR A 200 OG1 103.7 90.2 164.3 REMARK 620 5 HOH A 615 O 89.2 174.5 106.5 88.9 REMARK 620 6 HOH A 639 O 162.6 109.9 96.3 84.5 75.4 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA B 502 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ALA B 102 O REMARK 620 2 ASP B 196 O 84.5 REMARK 620 3 ASP B 196 OD1 84.4 76.5 REMARK 620 4 THR B 200 OG1 103.4 90.9 164.6 REMARK 620 5 HOH B 571 O 92.6 177.0 103.9 89.2 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA B 502 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: NYSGXRC-10252A RELATED DB: TARGETDB DBREF 2O34 A 2 249 UNP Q72D34 Q72D34_DESVH 2 249 DBREF 2O34 B 2 249 UNP Q72D34 Q72D34_DESVH 2 249 SEQADV 2O34 SER A 0 UNP Q72D34 CLONING ARTIFACT SEQADV 2O34 LEU A 1 UNP Q72D34 CLONING ARTIFACT SEQADV 2O34 MSE A 3 UNP Q72D34 MET 3 MODIFIED RESIDUE SEQADV 2O34 MSE A 48 UNP Q72D34 MET 48 MODIFIED RESIDUE SEQADV 2O34 MSE A 63 UNP Q72D34 MET 63 MODIFIED RESIDUE SEQADV 2O34 MSE A 89 UNP Q72D34 MET 89 MODIFIED RESIDUE SEQADV 2O34 MSE A 111 UNP Q72D34 MET 111 MODIFIED RESIDUE SEQADV 2O34 MSE A 152 UNP Q72D34 MET 152 MODIFIED RESIDUE SEQADV 2O34 MSE A 205 UNP Q72D34 MET 205 MODIFIED RESIDUE SEQADV 2O34 MSE A 244 UNP Q72D34 MET 244 MODIFIED RESIDUE SEQADV 2O34 SER B 0 UNP Q72D34 CLONING ARTIFACT SEQADV 2O34 LEU B 1 UNP Q72D34 CLONING ARTIFACT SEQADV 2O34 MSE B 3 UNP Q72D34 MET 3 MODIFIED RESIDUE SEQADV 2O34 MSE B 48 UNP Q72D34 MET 48 MODIFIED RESIDUE SEQADV 2O34 MSE B 63 UNP Q72D34 MET 63 MODIFIED RESIDUE SEQADV 2O34 MSE B 89 UNP Q72D34 MET 89 MODIFIED RESIDUE SEQADV 2O34 MSE B 111 UNP Q72D34 MET 111 MODIFIED RESIDUE SEQADV 2O34 MSE B 152 UNP Q72D34 MET 152 MODIFIED RESIDUE SEQADV 2O34 MSE B 205 UNP Q72D34 MET 205 MODIFIED RESIDUE SEQADV 2O34 MSE B 244 UNP Q72D34 MET 244 MODIFIED RESIDUE SEQRES 1 A 250 SER LEU PRO MSE GLN HIS VAL HIS THR SER PRO VAL ARG SEQRES 2 A 250 ASP TYR ARG ASN ARG CYS ALA ARG ARG GLU GLY GLU THR SEQRES 3 A 250 VAL PHE GLN VAL VAL VAL GLU GLU THR ASP LEU ARG VAL SEQRES 4 A 250 THR ALA LEU ALA GLU LEU ALA THR PRO MSE ALA ALA TYR SEQRES 5 A 250 VAL GLY GLU LEU ARG ALA GLN LEU LYS VAL TRP MSE GLU SEQRES 6 A 250 PHE GLN PRO ALA PHE ARG HIS SER LEU VAL PRO VAL GLU SEQRES 7 A 250 VAL PRO GLU GLY ALA PRO GLU VAL VAL ARG ARG MSE ALA SEQRES 8 A 250 HIS GLY ALA ARG LEU VAL GLY VAL GLY PRO PHE ALA ALA SEQRES 9 A 250 VAL ALA GLY THR ILE ALA GLN MSE VAL ALA GLU ARG PHE SEQRES 10 A 250 VAL ASP VAL SER PRO GLU LEU ILE VAL GLU ASN GLY GLY SEQRES 11 A 250 ASP LEU TYR LEU TYR SER GLU ARG ASP ARG VAL VAL GLY SEQRES 12 A 250 ILE LEU PRO ASP PRO ALA SER GLY ASP MSE VAL GLY ILE SEQRES 13 A 250 LEU VAL ARG ALA GLY THR ALA PRO VAL SER LEU CYS GLY SEQRES 14 A 250 SER SER ALA ARG ILE GLY HIS SER LEU SER LEU GLY ASP SEQRES 15 A 250 GLY ASP LEU ALA VAL VAL ARG ALA ARG ASP ALA SER LEU SEQRES 16 A 250 ALA ASP ALA ALA ALA THR ALA PHE GLY ASN MSE LEU ARG SEQRES 17 A 250 ARG ALA ASP ASP VAL ALA ALA VAL THR GLU ARG ALA ALA SEQRES 18 A 250 GLN LEU ALA SER ILE GLY ILE GLU GLY VAL TYR ALA GLN SEQRES 19 A 250 CYS GLY GLY ARG ILE GLY ILE TRP GLY ASP MSE GLU LEU SEQRES 20 A 250 ALA VAL ALA SEQRES 1 B 250 SER LEU PRO MSE GLN HIS VAL HIS THR SER PRO VAL ARG SEQRES 2 B 250 ASP TYR ARG ASN ARG CYS ALA ARG ARG GLU GLY GLU THR SEQRES 3 B 250 VAL PHE GLN VAL VAL VAL GLU GLU THR ASP LEU ARG VAL SEQRES 4 B 250 THR ALA LEU ALA GLU LEU ALA THR PRO MSE ALA ALA TYR SEQRES 5 B 250 VAL GLY GLU LEU ARG ALA GLN LEU LYS VAL TRP MSE GLU SEQRES 6 B 250 PHE GLN PRO ALA PHE ARG HIS SER LEU VAL PRO VAL GLU SEQRES 7 B 250 VAL PRO GLU GLY ALA PRO GLU VAL VAL ARG ARG MSE ALA SEQRES 8 B 250 HIS GLY ALA ARG LEU VAL GLY VAL GLY PRO PHE ALA ALA SEQRES 9 B 250 VAL ALA GLY THR ILE ALA GLN MSE VAL ALA GLU ARG PHE SEQRES 10 B 250 VAL ASP VAL SER PRO GLU LEU ILE VAL GLU ASN GLY GLY SEQRES 11 B 250 ASP LEU TYR LEU TYR SER GLU ARG ASP ARG VAL VAL GLY SEQRES 12 B 250 ILE LEU PRO ASP PRO ALA SER GLY ASP MSE VAL GLY ILE SEQRES 13 B 250 LEU VAL ARG ALA GLY THR ALA PRO VAL SER LEU CYS GLY SEQRES 14 B 250 SER SER ALA ARG ILE GLY HIS SER LEU SER LEU GLY ASP SEQRES 15 B 250 GLY ASP LEU ALA VAL VAL ARG ALA ARG ASP ALA SER LEU SEQRES 16 B 250 ALA ASP ALA ALA ALA THR ALA PHE GLY ASN MSE LEU ARG SEQRES 17 B 250 ARG ALA ASP ASP VAL ALA ALA VAL THR GLU ARG ALA ALA SEQRES 18 B 250 GLN LEU ALA SER ILE GLY ILE GLU GLY VAL TYR ALA GLN SEQRES 19 B 250 CYS GLY GLY ARG ILE GLY ILE TRP GLY ASP MSE GLU LEU SEQRES 20 B 250 ALA VAL ALA MODRES 2O34 MSE A 3 MET SELENOMETHIONINE MODRES 2O34 MSE A 48 MET SELENOMETHIONINE MODRES 2O34 MSE A 63 MET SELENOMETHIONINE MODRES 2O34 MSE A 89 MET SELENOMETHIONINE MODRES 2O34 MSE A 111 MET SELENOMETHIONINE MODRES 2O34 MSE A 152 MET SELENOMETHIONINE MODRES 2O34 MSE A 205 MET SELENOMETHIONINE MODRES 2O34 MSE A 244 MET SELENOMETHIONINE MODRES 2O34 MSE B 48 MET SELENOMETHIONINE MODRES 2O34 MSE B 63 MET SELENOMETHIONINE MODRES 2O34 MSE B 89 MET SELENOMETHIONINE MODRES 2O34 MSE B 111 MET SELENOMETHIONINE MODRES 2O34 MSE B 152 MET SELENOMETHIONINE MODRES 2O34 MSE B 205 MET SELENOMETHIONINE MODRES 2O34 MSE B 244 MET SELENOMETHIONINE HET MSE A 3 8 HET MSE A 48 8 HET MSE A 63 8 HET MSE A 89 8 HET MSE A 111 8 HET MSE A 152 8 HET MSE A 205 8 HET MSE A 244 13 HET MSE B 48 8 HET MSE B 63 8 HET MSE B 89 8 HET MSE B 111 8 HET MSE B 152 8 HET MSE B 205 8 HET MSE B 244 8 HET NA A 501 1 HET NA A 503 1 HET NA B 502 1 HETNAM MSE SELENOMETHIONINE HETNAM NA SODIUM ION FORMUL 1 MSE 15(C5 H11 N O2 SE) FORMUL 3 NA 3(NA 1+) FORMUL 6 HOH *374(H2 O) HELIX 1 1 LEU A 44 GLN A 66 1 23 HELIX 2 2 PRO A 83 GLY A 97 1 15 HELIX 3 3 GLY A 99 ALA A 102 5 4 HELIX 4 4 ALA A 103 VAL A 117 1 15 HELIX 5 5 ASP A 118 SER A 120 5 3 HELIX 6 6 ASP A 191 LEU A 206 1 16 HELIX 7 7 ASP A 210 LEU A 222 1 13 HELIX 8 8 ALA A 223 ILE A 225 5 3 HELIX 9 9 LEU B 44 GLN B 66 1 23 HELIX 10 10 PRO B 83 GLY B 97 1 15 HELIX 11 11 GLY B 99 ALA B 102 5 4 HELIX 12 12 ALA B 103 VAL B 117 1 15 HELIX 13 13 ASP B 118 SER B 120 5 3 HELIX 14 14 ASP B 191 LEU B 206 1 16 HELIX 15 15 ASP B 210 LEU B 222 1 13 HELIX 16 16 ALA B 223 ILE B 225 5 3 SHEET 1 A 4 GLN A 4 VAL A 6 0 SHEET 2 A 4 ARG A 139 ASP A 146 -1 O GLY A 142 N GLN A 4 SHEET 3 A 4 ASP A 151 VAL A 157 -1 O ASP A 151 N ASP A 146 SHEET 4 A 4 LEU A 246 ALA A 247 -1 O ALA A 247 N GLY A 154 SHEET 1 B 8 THR A 25 VAL A 31 0 SHEET 2 B 8 THR A 34 ALA A 40 -1 O LEU A 36 N VAL A 29 SHEET 3 B 8 LEU A 123 ASN A 127 -1 O ILE A 124 N THR A 39 SHEET 4 B 8 ASP A 130 TYR A 134 -1 O ASP A 130 N ASN A 127 SHEET 5 B 8 VAL A 164 GLY A 168 -1 O LEU A 166 N LEU A 131 SHEET 6 B 8 LEU A 184 ALA A 189 -1 O VAL A 187 N CYS A 167 SHEET 7 B 8 ILE A 227 CYS A 234 -1 O TYR A 231 N VAL A 186 SHEET 8 B 8 ARG A 237 GLY A 242 -1 O GLY A 239 N ALA A 232 SHEET 1 C 8 THR B 25 VAL B 31 0 SHEET 2 C 8 THR B 34 ALA B 40 -1 O ALA B 40 N THR B 25 SHEET 3 C 8 LEU B 123 ASN B 127 -1 O ILE B 124 N THR B 39 SHEET 4 C 8 ASP B 130 TYR B 134 -1 O ASP B 130 N ASN B 127 SHEET 5 C 8 VAL B 164 GLY B 168 -1 O VAL B 164 N LEU B 133 SHEET 6 C 8 LEU B 184 ALA B 189 -1 O VAL B 187 N CYS B 167 SHEET 7 C 8 ILE B 227 CYS B 234 -1 O TYR B 231 N VAL B 186 SHEET 8 C 8 ARG B 237 GLY B 242 -1 O GLY B 239 N ALA B 232 SHEET 1 D 3 ARG B 139 LEU B 144 0 SHEET 2 D 3 VAL B 153 VAL B 157 -1 O VAL B 157 N ARG B 139 SHEET 3 D 3 LEU B 246 ALA B 247 -1 O ALA B 247 N GLY B 154 LINK C PRO A 2 N MSE A 3 1555 1555 1.33 LINK C MSE A 3 N GLN A 4 1555 1555 1.32 LINK C PRO A 47 N MSE A 48 1555 1555 1.33 LINK C MSE A 48 N ALA A 49 1555 1555 1.33 LINK C TRP A 62 N MSE A 63 1555 1555 1.32 LINK C MSE A 63 N GLU A 64 1555 1555 1.34 LINK C ARG A 88 N MSE A 89 1555 1555 1.33 LINK C MSE A 89 N ALA A 90 1555 1555 1.34 LINK C GLN A 110 N MSE A 111 1555 1555 1.34 LINK C MSE A 111 N VAL A 112 1555 1555 1.34 LINK C ASP A 151 N MSE A 152 1555 1555 1.34 LINK C MSE A 152 N VAL A 153 1555 1555 1.33 LINK C ASN A 204 N MSE A 205 1555 1555 1.34 LINK C MSE A 205 N LEU A 206 1555 1555 1.33 LINK C ASP A 243 N MSE A 244 1555 1555 1.33 LINK C MSE A 244 N GLU A 245 1555 1555 1.32 LINK C PRO B 47 N MSE B 48 1555 1555 1.34 LINK C MSE B 48 N ALA B 49 1555 1555 1.33 LINK C TRP B 62 N MSE B 63 1555 1555 1.33 LINK C MSE B 63 N GLU B 64 1555 1555 1.34 LINK C ARG B 88 N MSE B 89 1555 1555 1.34 LINK C MSE B 89 N ALA B 90 1555 1555 1.33 LINK C GLN B 110 N MSE B 111 1555 1555 1.32 LINK C MSE B 111 N VAL B 112 1555 1555 1.33 LINK C ASP B 151 N MSE B 152 1555 1555 1.33 LINK C MSE B 152 N VAL B 153 1555 1555 1.34 LINK C ASN B 204 N MSE B 205 1555 1555 1.34 LINK C MSE B 205 N LEU B 206 1555 1555 1.32 LINK C ASP B 243 N MSE B 244 1555 1555 1.32 LINK C MSE B 244 N GLU B 245 1555 1555 1.33 LINK O SER A 0 NA NA A 503 1555 1555 2.41 LINK O PRO A 2 NA NA A 503 1555 1555 2.60 LINK O MSE A 3 NA NA A 503 1555 1555 2.53 LINK O ALA A 102 NA NA A 501 1555 1555 2.39 LINK OE2 GLU A 126 NA NA A 503 1555 1555 2.38 LINK O GLY A 128 NA NA A 503 1555 1555 2.14 LINK O ASP A 196 NA NA A 501 1555 1555 2.40 LINK OD1 ASP A 196 NA NA A 501 1555 1555 2.25 LINK OG1 THR A 200 NA NA A 501 1555 1555 2.34 LINK NA NA A 501 O HOH A 615 1555 1555 2.29 LINK NA NA A 501 O HOH A 639 1555 1555 2.35 LINK O ALA B 102 NA NA B 502 1555 1555 2.37 LINK O ASP B 196 NA NA B 502 1555 1555 2.42 LINK OD1 ASP B 196 NA NA B 502 1555 1555 2.37 LINK OG1 THR B 200 NA NA B 502 1555 1555 2.24 LINK NA NA B 502 O HOH B 571 1555 1555 2.48 CISPEP 1 LEU A 1 PRO A 2 0 -2.19 CISPEP 2 ALA A 162 PRO A 163 0 4.98 CISPEP 3 ILE A 173 GLY A 174 0 6.62 CISPEP 4 GLY A 174 HIS A 175 0 9.48 CISPEP 5 PRO B 147 ALA B 148 0 -2.89 CISPEP 6 ALA B 162 PRO B 163 0 -0.41 CISPEP 7 ILE B 173 GLY B 174 0 1.90 CISPEP 8 HIS B 175 SER B 176 0 -0.72 SITE 1 AC1 5 ALA A 102 ASP A 196 THR A 200 HOH A 615 SITE 2 AC1 5 HOH A 639 SITE 1 AC2 5 SER A 0 PRO A 2 MSE A 3 GLU A 126 SITE 2 AC2 5 GLY A 128 SITE 1 AC3 4 ALA B 102 ASP B 196 THR B 200 HOH B 571 CRYST1 60.480 81.480 151.170 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016534 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012273 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006615 0.00000