HEADER HYDROLASE 02-DEC-06 2O3Z TITLE X-RAY CRYSTAL STRUCTURE OF LPXC COMPLEXED WITH 3-HEPTYLOXYBENZOATE COMPND MOL_ID: 1; COMPND 2 MOLECULE: UDP-3-O-[3-HYDROXYMYRISTOYL] N-ACETYLGLUCOSAMINE COMPND 3 DEACETYLASE; COMPND 4 CHAIN: A, B; COMPND 5 SYNONYM: UDP-3-O-ACYL-GLCNAC DEACETYLASE; COMPND 6 EC: 3.5.1.-; COMPND 7 ENGINEERED: YES; COMPND 8 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: AQUIFEX AEOLICUS; SOURCE 3 ORGANISM_TAXID: 63363; SOURCE 4 GENE: LPXC, ENVA; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)PLYSS; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET21A KEYWDS LIPID A BIOSYNTHESIS, LIPID SYNTHESIS, LPXC, 3-HEPTYLOXYBENZOATE, KEYWDS 2 HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR H.A.GENNADIOS,D.A.WHITTINGTON,D.W.CHRISTIANSON REVDAT 6 30-AUG-23 2O3Z 1 REMARK REVDAT 5 20-OCT-21 2O3Z 1 REMARK SEQADV LINK REVDAT 4 13-JUL-11 2O3Z 1 VERSN REVDAT 3 24-FEB-09 2O3Z 1 VERSN REVDAT 2 01-MAY-07 2O3Z 1 JRNL REVDAT 1 27-FEB-07 2O3Z 0 JRNL AUTH H.SHIN,H.A.GENNADIOS,D.A.WHITTINGTON,D.W.CHRISTIANSON JRNL TITL AMPHIPATHIC BENZOIC ACID DERIVATIVES: SYNTHESIS AND BINDING JRNL TITL 2 IN THE HYDROPHOBIC TUNNEL OF THE ZINC DEACETYLASE LPXC. JRNL REF BIOORG.MED.CHEM. V. 15 2617 2007 JRNL REFN ISSN 0968-0896 JRNL PMID 17296300 JRNL DOI 10.1016/J.BMC.2007.01.044 REMARK 2 REMARK 2 RESOLUTION. 2.25 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.25 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 46.70 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 NUMBER OF REFLECTIONS : 33203 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.197 REMARK 3 FREE R VALUE : 0.227 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : 1650 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.25 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.28 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.80 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4314 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 50 REMARK 3 SOLVENT ATOMS : 168 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 24.60 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -3.90000 REMARK 3 B22 (A**2) : -3.90000 REMARK 3 B33 (A**2) : 7.80000 REMARK 3 B12 (A**2) : 4.17000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.25 REMARK 3 ESD FROM SIGMAA (A) : 0.21 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.006 REMARK 3 BOND ANGLES (DEGREES) : 1.200 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 23.40 REMARK 3 IMPROPER ANGLES (DEGREES) : 0.750 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : NULL REMARK 3 BSOL : NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2O3Z COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 07-DEC-06. REMARK 100 THE DEPOSITION ID IS D_1000040657. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 06-JUN-05 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X29A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.90000 REMARK 200 MONOCHROMATOR : ROSENBAUM-ROCK DOUBLE CRYSTAL REMARK 200 OPTICS : SAGITAL FOCUSING MONOCHROMATOR REMARK 200 AND VERTICAL FOCUSING MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 33203 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.250 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.7 REMARK 200 DATA REDUNDANCY : 2.800 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.25 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.28 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : 2.60 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: PDB ENTRY 1P42 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 57.79 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.91 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100MM HEPES PH 7.0, 12-14% PEG3350, REMARK 280 180MM NACL, 0.5MM ZNSO4, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 294K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 61 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+5/6 REMARK 290 6555 X-Y,X,Z+1/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 40.89133 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 81.78267 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 61.33700 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 102.22833 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 20.44567 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3, 4 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THERE ARE 2 MONOMERS IN THE ASYMMETRIC UNIT FORMING A REMARK 300 CRYSTALLOGRAPIC DIMER. THE SECOND MONOMER IS GENERATED BY: X,Y,Z Y, REMARK 300 X-Y,1/3+Z -X+Y,-X,2/3+Z -X,-Y,1/2+Z Y,-X+Y,5/6+Z X-Y,X,1/6+Z REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2960 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 22510 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -208.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 101.00600 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 40.89133 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 4 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 LEU A 281 REMARK 465 THR A 282 REMARK 465 ARG A 283 REMARK 465 MET B 1 REMARK 465 LEU B 281 REMARK 465 THR B 282 REMARK 465 ARG B 283 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS A 58 -2.85 77.40 REMARK 500 THR A 76 63.62 60.00 REMARK 500 LEU A 104 -124.55 53.95 REMARK 500 SER A 107 -169.81 -118.46 REMARK 500 ASN A 124 51.06 -95.26 REMARK 500 ASP A 140 102.49 -169.36 REMARK 500 GLU A 141 73.12 34.43 REMARK 500 ASN A 163 -159.25 -132.05 REMARK 500 ASP A 221 41.20 -157.42 REMARK 500 LYS A 278 3.58 -66.00 REMARK 500 GLN A 279 26.76 44.10 REMARK 500 SER B 59 165.90 170.16 REMARK 500 LEU B 104 -130.43 54.76 REMARK 500 SER B 107 -167.59 -117.70 REMARK 500 ARG B 125 119.31 160.04 REMARK 500 ASP B 140 105.06 -170.80 REMARK 500 GLU B 141 70.33 42.64 REMARK 500 SER B 150 139.00 -174.98 REMARK 500 ASN B 163 -164.45 -127.57 REMARK 500 LEU B 206 -169.92 -114.84 REMARK 500 ASP B 221 32.04 -144.56 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 506 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLY A 2 N REMARK 620 2 GLU A 126 OE1 115.8 REMARK 620 3 GLU A 126 OE2 80.8 55.6 REMARK 620 4 HIS B 29 NE2 102.4 124.8 96.4 REMARK 620 5 GLU B 95 OE1 111.4 99.1 154.5 102.3 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 502 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 58 NE2 REMARK 620 2 HIS A 200 NE2 108.9 REMARK 620 3 CL A 601 CL 125.2 111.4 REMARK 620 4 HOH A 602 O 92.2 93.1 120.6 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 501 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 79 NE2 REMARK 620 2 HIS A 238 NE2 103.2 REMARK 620 3 ASP A 242 OD1 95.6 99.5 REMARK 620 4 ASP A 242 OD2 148.3 89.3 53.2 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 504 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 58 NE2 REMARK 620 2 HIS B 200 NE2 117.2 REMARK 620 3 HOH B 507 O 92.3 86.2 REMARK 620 4 HOH B 508 O 115.6 111.9 130.6 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 503 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 79 NE2 REMARK 620 2 HIS B 238 NE2 99.9 REMARK 620 3 ASP B 242 OD1 99.5 97.7 REMARK 620 N 1 2 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 504 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 506 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE AI7 A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE AI7 B 301 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1P42 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF AQUIFEX AEOLICUS LPXC DEACETYLASE (ZINC- REMARK 900 INHIBITED FORM) REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE RESIDUE NUMBERING SYSTEM FOLLOWS THAT OF REMARK 999 THE E.COLI ENZYME, AND RESULTS IN A BREAKS REMARK 999 IN THE SEQUENTIAL NUMBERING IN FEW REGIONS DBREF 2O3Z A 1 283 UNP O67648 LPXC_AQUAE 1 283 DBREF 2O3Z B 1 283 UNP O67648 LPXC_AQUAE 1 283 SEQADV 2O3Z ALA A 193 UNP O67648 CYS 181 ENGINEERED MUTATION SEQADV 2O3Z A UNP O67648 ASP 272 DELETION SEQADV 2O3Z A UNP O67648 LEU 273 DELETION SEQADV 2O3Z A UNP O67648 PRO 274 DELETION SEQADV 2O3Z A UNP O67648 HIS 275 DELETION SEQADV 2O3Z A UNP O67648 LEU 276 DELETION SEQADV 2O3Z A UNP O67648 PRO 277 DELETION SEQADV 2O3Z A UNP O67648 SER 278 DELETION SEQADV 2O3Z A UNP O67648 VAL 279 DELETION SEQADV 2O3Z A UNP O67648 GLN 280 DELETION SEQADV 2O3Z A UNP O67648 ALA 281 DELETION SEQADV 2O3Z A UNP O67648 LEU 282 DELETION SEQADV 2O3Z ALA B 193 UNP O67648 CYS 181 ENGINEERED MUTATION SEQADV 2O3Z B UNP O67648 ASP 272 DELETION SEQADV 2O3Z B UNP O67648 LEU 273 DELETION SEQADV 2O3Z B UNP O67648 PRO 274 DELETION SEQADV 2O3Z B UNP O67648 HIS 275 DELETION SEQADV 2O3Z B UNP O67648 LEU 276 DELETION SEQADV 2O3Z B UNP O67648 PRO 277 DELETION SEQADV 2O3Z B UNP O67648 SER 278 DELETION SEQADV 2O3Z B UNP O67648 VAL 279 DELETION SEQADV 2O3Z B UNP O67648 GLN 280 DELETION SEQADV 2O3Z B UNP O67648 ALA 281 DELETION SEQADV 2O3Z B UNP O67648 LEU 282 DELETION SEQRES 1 A 271 MET GLY LEU GLU LYS THR VAL LYS GLU LYS LEU SER PHE SEQRES 2 A 271 GLU GLY VAL GLY ILE HIS THR GLY GLU TYR SER LYS LEU SEQRES 3 A 271 ILE ILE HIS PRO GLU LYS GLU GLY THR GLY ILE ARG PHE SEQRES 4 A 271 PHE LYS ASN GLY VAL TYR ILE PRO ALA ARG HIS GLU PHE SEQRES 5 A 271 VAL VAL HIS THR ASN HIS SER THR ASP LEU GLY PHE LYS SEQRES 6 A 271 GLY GLN ARG ILE LYS THR VAL GLU HIS ILE LEU SER VAL SEQRES 7 A 271 LEU HIS LEU LEU GLU ILE THR ASN VAL THR ILE GLU VAL SEQRES 8 A 271 ILE GLY ASN GLU ILE PRO ILE LEU ASP GLY SER GLY TRP SEQRES 9 A 271 GLU PHE TYR GLU ALA ILE ARG LYS ASN ILE LEU ASN GLN SEQRES 10 A 271 ASN ARG GLU ILE ASP TYR PHE VAL VAL GLU GLU PRO ILE SEQRES 11 A 271 ILE VAL GLU ASP GLU GLY ARG LEU ILE LYS ALA GLU PRO SEQRES 12 A 271 SER ASP THR LEU GLU VAL THR TYR GLU GLY GLU PHE LYS SEQRES 13 A 271 ASN PHE LEU GLY ARG GLN LYS PHE THR PHE VAL GLU GLY SEQRES 14 A 271 ASN GLU GLU GLU ILE VAL LEU ALA ARG THR PHE ALA PHE SEQRES 15 A 271 ASP TRP GLU ILE GLU HIS ILE LYS LYS VAL GLY LEU GLY SEQRES 16 A 271 LYS GLY GLY SER LEU LYS ASN THR LEU VAL LEU GLY LYS SEQRES 17 A 271 ASP LYS VAL TYR ASN PRO GLU GLY LEU ARG TYR GLU ASN SEQRES 18 A 271 GLU PRO VAL ARG HIS LYS VAL PHE ASP LEU ILE GLY ASP SEQRES 19 A 271 LEU TYR LEU LEU GLY SER PRO VAL LYS GLY LYS PHE TYR SEQRES 20 A 271 SER PHE ARG GLY GLY HIS SER LEU ASN VAL LYS LEU VAL SEQRES 21 A 271 LYS GLU LEU ALA LYS LYS GLN LYS LEU THR ARG SEQRES 1 B 271 MET GLY LEU GLU LYS THR VAL LYS GLU LYS LEU SER PHE SEQRES 2 B 271 GLU GLY VAL GLY ILE HIS THR GLY GLU TYR SER LYS LEU SEQRES 3 B 271 ILE ILE HIS PRO GLU LYS GLU GLY THR GLY ILE ARG PHE SEQRES 4 B 271 PHE LYS ASN GLY VAL TYR ILE PRO ALA ARG HIS GLU PHE SEQRES 5 B 271 VAL VAL HIS THR ASN HIS SER THR ASP LEU GLY PHE LYS SEQRES 6 B 271 GLY GLN ARG ILE LYS THR VAL GLU HIS ILE LEU SER VAL SEQRES 7 B 271 LEU HIS LEU LEU GLU ILE THR ASN VAL THR ILE GLU VAL SEQRES 8 B 271 ILE GLY ASN GLU ILE PRO ILE LEU ASP GLY SER GLY TRP SEQRES 9 B 271 GLU PHE TYR GLU ALA ILE ARG LYS ASN ILE LEU ASN GLN SEQRES 10 B 271 ASN ARG GLU ILE ASP TYR PHE VAL VAL GLU GLU PRO ILE SEQRES 11 B 271 ILE VAL GLU ASP GLU GLY ARG LEU ILE LYS ALA GLU PRO SEQRES 12 B 271 SER ASP THR LEU GLU VAL THR TYR GLU GLY GLU PHE LYS SEQRES 13 B 271 ASN PHE LEU GLY ARG GLN LYS PHE THR PHE VAL GLU GLY SEQRES 14 B 271 ASN GLU GLU GLU ILE VAL LEU ALA ARG THR PHE ALA PHE SEQRES 15 B 271 ASP TRP GLU ILE GLU HIS ILE LYS LYS VAL GLY LEU GLY SEQRES 16 B 271 LYS GLY GLY SER LEU LYS ASN THR LEU VAL LEU GLY LYS SEQRES 17 B 271 ASP LYS VAL TYR ASN PRO GLU GLY LEU ARG TYR GLU ASN SEQRES 18 B 271 GLU PRO VAL ARG HIS LYS VAL PHE ASP LEU ILE GLY ASP SEQRES 19 B 271 LEU TYR LEU LEU GLY SER PRO VAL LYS GLY LYS PHE TYR SEQRES 20 B 271 SER PHE ARG GLY GLY HIS SER LEU ASN VAL LYS LEU VAL SEQRES 21 B 271 LYS GLU LEU ALA LYS LYS GLN LYS LEU THR ARG HET SO4 A 401 5 HET ZN A 501 1 HET ZN A 502 1 HET CL A 601 1 HET AI7 A 301 17 HET SO4 B 401 5 HET ZN B 503 1 HET ZN B 504 1 HET ZN B 506 1 HET AI7 B 301 17 HETNAM SO4 SULFATE ION HETNAM ZN ZINC ION HETNAM CL CHLORIDE ION HETNAM AI7 3-(HEPTYLOXY)BENZOIC ACID HETSYN AI7 3-HEPTYLOXYBENZOATE FORMUL 3 SO4 2(O4 S 2-) FORMUL 4 ZN 5(ZN 2+) FORMUL 6 CL CL 1- FORMUL 7 AI7 2(C14 H20 O3) FORMUL 13 HOH *168(H2 O) HELIX 1 1 ARG A 49 GLU A 51 5 3 HELIX 2 2 VAL A 77 LEU A 87 1 11 HELIX 3 3 GLY A 108 LYS A 117 1 10 HELIX 4 4 ASN A 182 ILE A 186 5 5 HELIX 5 5 GLU A 197 VAL A 204 1 8 HELIX 6 6 ASN A 233 TYR A 248 1 16 HELIX 7 7 LEU A 249 GLY A 251 5 3 HELIX 8 8 GLY A 264 LYS A 278 1 15 HELIX 9 9 ARG B 49 GLU B 51 5 3 HELIX 10 10 VAL B 77 LEU B 87 1 11 HELIX 11 11 GLY B 108 LYS B 117 1 10 HELIX 12 12 ASN B 182 ILE B 186 5 5 HELIX 13 13 ASP B 195 VAL B 204 1 10 HELIX 14 14 ASN B 233 TYR B 248 1 16 HELIX 15 15 LEU B 249 GLY B 251 5 3 HELIX 16 16 GLY B 264 LYS B 278 1 15 SHEET 1 A 2 LEU A 3 VAL A 7 0 SHEET 2 A 2 ILE A 120 GLU A 126 -1 O ARG A 125 N GLU A 4 SHEET 1 B 5 LEU A 11 VAL A 16 0 SHEET 2 B 5 TYR A 23 PRO A 30 -1 O LEU A 26 N PHE A 13 SHEET 3 B 5 VAL A 92 ILE A 97 -1 O THR A 93 N HIS A 29 SHEET 4 B 5 ILE A 37 LYS A 41 1 N ARG A 38 O ILE A 94 SHEET 5 B 5 VAL A 44 PRO A 47 -1 O ILE A 46 N PHE A 39 SHEET 1 C 3 VAL A 53 HIS A 55 0 SHEET 2 C 3 ASP A 61 PHE A 69 -1 O ASP A 61 N VAL A 54 SHEET 3 C 3 GLN A 72 ILE A 74 -1 O ILE A 74 N LEU A 62 SHEET 1 D 2 PHE A 130 VAL A 131 0 SHEET 2 D 2 VAL A 254 LYS A 255 1 O LYS A 255 N PHE A 130 SHEET 1 E 5 ILE A 136 ASP A 140 0 SHEET 2 E 5 ARG A 143 GLU A 148 -1 O ALA A 147 N ILE A 136 SHEET 3 E 5 LYS A 257 PHE A 261 -1 O PHE A 261 N LEU A 144 SHEET 4 E 5 GLU A 154 GLU A 160 1 N GLU A 154 O PHE A 258 SHEET 5 E 5 ARG A 170 VAL A 179 -1 O PHE A 175 N VAL A 155 SHEET 1 F 2 PHE A 192 PHE A 194 0 SHEET 2 F 2 LEU A 216 LEU A 218 1 O LEU A 216 N ALA A 193 SHEET 1 G 2 LEU B 3 VAL B 7 0 SHEET 2 G 2 ILE B 120 GLU B 126 -1 O ARG B 125 N GLU B 4 SHEET 1 H 5 LEU B 11 VAL B 16 0 SHEET 2 H 5 TYR B 23 PRO B 30 -1 O ILE B 28 N LEU B 11 SHEET 3 H 5 VAL B 92 ILE B 97 -1 O ILE B 97 N LYS B 25 SHEET 4 H 5 ILE B 37 LYS B 41 1 N PHE B 40 O VAL B 96 SHEET 5 H 5 VAL B 44 PRO B 47 -1 O ILE B 46 N PHE B 39 SHEET 1 I 3 VAL B 53 HIS B 55 0 SHEET 2 I 3 ASP B 61 PHE B 69 -1 O ASP B 61 N VAL B 54 SHEET 3 I 3 GLN B 72 ILE B 74 -1 O ILE B 74 N LEU B 62 SHEET 1 J 2 PHE B 130 VAL B 131 0 SHEET 2 J 2 VAL B 254 LYS B 255 1 O LYS B 255 N PHE B 130 SHEET 1 K 5 ILE B 136 ASP B 140 0 SHEET 2 K 5 ARG B 143 GLU B 148 -1 O ARG B 143 N ASP B 140 SHEET 3 K 5 LYS B 257 PHE B 261 -1 O PHE B 261 N LEU B 144 SHEET 4 K 5 GLU B 154 GLU B 160 1 N GLU B 158 O SER B 260 SHEET 5 K 5 ARG B 170 VAL B 179 -1 O PHE B 175 N VAL B 155 SHEET 1 L 2 PHE B 192 PHE B 194 0 SHEET 2 L 2 LEU B 216 LEU B 218 1 O LEU B 216 N ALA B 193 LINK N GLY A 2 ZN ZN B 506 3664 1555 2.32 LINK NE2 HIS A 58 ZN ZN A 502 1555 1555 2.26 LINK NE2 HIS A 79 ZN ZN A 501 1555 1555 2.09 LINK OE1 GLU A 126 ZN ZN B 506 3664 1555 1.96 LINK OE2 GLU A 126 ZN ZN B 506 3664 1555 2.59 LINK NE2 HIS A 200 ZN ZN A 502 1555 1555 2.20 LINK NE2 HIS A 238 ZN ZN A 501 1555 1555 2.05 LINK OD1 ASP A 242 ZN ZN A 501 1555 1555 2.10 LINK OD2 ASP A 242 ZN ZN A 501 1555 1555 2.65 LINK ZN ZN A 502 CL CL A 601 1555 1555 2.06 LINK ZN ZN A 502 O HOH A 602 1555 1555 2.33 LINK NE2 HIS B 29 ZN ZN B 506 1555 1555 2.03 LINK NE2 HIS B 58 ZN ZN B 504 1555 1555 2.26 LINK NE2 HIS B 79 ZN ZN B 503 1555 1555 2.08 LINK OE1 GLU B 95 ZN ZN B 506 1555 1555 1.88 LINK NE2 HIS B 200 ZN ZN B 504 1555 1555 2.45 LINK NE2 HIS B 238 ZN ZN B 503 1555 1555 2.13 LINK OD1 ASP B 242 ZN ZN B 503 1555 1555 2.04 LINK ZN ZN B 504 O HOH B 507 1555 1555 2.23 LINK ZN ZN B 504 O HOH B 508 1555 1555 2.16 SITE 1 AC1 7 THR A 56 HIS A 58 LYS A 239 GLY A 264 SITE 2 AC1 7 HIS A 265 HOH A 622 HOH A 668 SITE 1 AC2 6 THR B 56 HIS B 58 LYS B 239 GLY B 264 SITE 2 AC2 6 HIS B 265 AI7 B 301 SITE 1 AC3 3 HIS A 79 HIS A 238 ASP A 242 SITE 1 AC4 4 HIS A 58 HIS A 200 CL A 601 HOH A 602 SITE 1 AC5 3 HIS B 79 HIS B 238 ASP B 242 SITE 1 AC6 4 HIS B 58 HIS B 200 HOH B 507 HOH B 508 SITE 1 AC7 4 GLY A 2 GLU A 126 HIS B 29 GLU B 95 SITE 1 AC8 3 PHE A 167 HIS A 200 ZN A 502 SITE 1 AC9 10 ILE A 18 ILE A 198 LYS A 202 GLY A 210 SITE 2 AC9 10 SER A 211 HOH A 667 HOH A 699 SER B 211 SITE 3 AC9 10 LEU B 212 AI7 B 301 SITE 1 BC1 11 LEU A 212 AI7 A 301 ILE B 18 ILE B 198 SITE 2 BC1 11 ILE B 201 LYS B 202 GLY B 207 GLY B 210 SITE 3 BC1 11 SER B 211 VAL B 217 SO4 B 401 CRYST1 101.006 101.006 122.674 90.00 90.00 120.00 P 61 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009900 0.005716 0.000000 0.00000 SCALE2 0.000000 0.011432 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008152 0.00000