data_2O49 # _entry.id 2O49 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.281 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 2O49 NDB PD0946 RCSB RCSB040667 WWPDB D_1000040667 # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 1YSE 'NMR solution structure of essentially the same protein domain in a free state' unspecified PDB 2O4A . unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 2O49 _pdbx_database_status.recvd_initial_deposition_date 2006-12-04 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Yamasaki, K.' 1 'Akiba, T.' 2 'Harata, K.' 3 # _citation.id primary _citation.title 'Structural basis for recognition of the matrix attachment region of DNA by transcription factor SATB1.' _citation.journal_abbrev 'Nucleic Acids Res.' _citation.journal_volume 35 _citation.page_first 5073 _citation.page_last 5084 _citation.year 2007 _citation.journal_id_ASTM NARHAD _citation.country UK _citation.journal_id_ISSN 0305-1048 _citation.journal_id_CSD 0389 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 17652321 _citation.pdbx_database_id_DOI 10.1093/nar/gkm504 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Yamasaki, K.' 1 primary 'Akiba, T.' 2 primary 'Yamasaki, T.' 3 primary 'Harata, K.' 4 # _cell.entry_id 2O49 _cell.length_a 29.659 _cell.length_b 36.997 _cell.length_c 41.248 _cell.angle_alpha 71.60 _cell.angle_beta 83.92 _cell.angle_gamma 71.07 _cell.Z_PDB 1 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 2O49 _symmetry.space_group_name_H-M 'P 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn ;DNA (5'-D(*DGP*DCP*DTP*DAP*DAP*DTP*DAP*DTP*DAP*DTP*DGP*DC)-3') ; 3661.416 1 ? ? ? ? 2 polymer syn ;DNA (5'-D(*DGP*DCP*DAP*DTP*DAP*DTP*DAP*DTP*DTP*DAP*DGP*DC)-3') ; 3661.416 1 ? ? ? ? 3 polymer man 'DNA-binding protein SATB1' 10952.381 1 ? ? 'N-terminal CUT domain (residues 368-452)' ? 4 water nat water 18.015 75 ? ? ? ? # _entity_name_com.entity_id 3 _entity_name_com.name 'Special AT-rich sequence-binding protein 1' # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 polydeoxyribonucleotide no no '(DG)(DC)(DT)(DA)(DA)(DT)(DA)(DT)(DA)(DT)(DG)(DC)' GCTAATATATGC B ? 2 polydeoxyribonucleotide no no '(DG)(DC)(DA)(DT)(DA)(DT)(DA)(DT)(DT)(DA)(DG)(DC)' GCATATATTAGC C ? 3 'polypeptide(L)' no no ;GSHMNTEVSSEIYQWVRDELKRAGISQAVFARVAFNRTQGLLSEILRKEEDPKTASQSLLVNLRAMQNFLQLPEAERDRI YQDERERSLRKRK ; ;GSHMNTEVSSEIYQWVRDELKRAGISQAVFARVAFNRTQGLLSEILRKEEDPKTASQSLLVNLRAMQNFLQLPEAERDRI YQDERERSLRKRK ; A ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DG n 1 2 DC n 1 3 DT n 1 4 DA n 1 5 DA n 1 6 DT n 1 7 DA n 1 8 DT n 1 9 DA n 1 10 DT n 1 11 DG n 1 12 DC n 2 1 DG n 2 2 DC n 2 3 DA n 2 4 DT n 2 5 DA n 2 6 DT n 2 7 DA n 2 8 DT n 2 9 DT n 2 10 DA n 2 11 DG n 2 12 DC n 3 1 GLY n 3 2 SER n 3 3 HIS n 3 4 MET n 3 5 ASN n 3 6 THR n 3 7 GLU n 3 8 VAL n 3 9 SER n 3 10 SER n 3 11 GLU n 3 12 ILE n 3 13 TYR n 3 14 GLN n 3 15 TRP n 3 16 VAL n 3 17 ARG n 3 18 ASP n 3 19 GLU n 3 20 LEU n 3 21 LYS n 3 22 ARG n 3 23 ALA n 3 24 GLY n 3 25 ILE n 3 26 SER n 3 27 GLN n 3 28 ALA n 3 29 VAL n 3 30 PHE n 3 31 ALA n 3 32 ARG n 3 33 VAL n 3 34 ALA n 3 35 PHE n 3 36 ASN n 3 37 ARG n 3 38 THR n 3 39 GLN n 3 40 GLY n 3 41 LEU n 3 42 LEU n 3 43 SER n 3 44 GLU n 3 45 ILE n 3 46 LEU n 3 47 ARG n 3 48 LYS n 3 49 GLU n 3 50 GLU n 3 51 ASP n 3 52 PRO n 3 53 LYS n 3 54 THR n 3 55 ALA n 3 56 SER n 3 57 GLN n 3 58 SER n 3 59 LEU n 3 60 LEU n 3 61 VAL n 3 62 ASN n 3 63 LEU n 3 64 ARG n 3 65 ALA n 3 66 MET n 3 67 GLN n 3 68 ASN n 3 69 PHE n 3 70 LEU n 3 71 GLN n 3 72 LEU n 3 73 PRO n 3 74 GLU n 3 75 ALA n 3 76 GLU n 3 77 ARG n 3 78 ASP n 3 79 ARG n 3 80 ILE n 3 81 TYR n 3 82 GLN n 3 83 ASP n 3 84 GLU n 3 85 ARG n 3 86 GLU n 3 87 ARG n 3 88 SER n 3 89 LEU n 3 90 ARG n 3 91 LYS n 3 92 ARG n 3 93 LYS n # _entity_src_gen.entity_id 3 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name human _entity_src_gen.gene_src_genus Homo _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli BL21(DE3)' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 469008 _entity_src_gen.host_org_genus Escherichia _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species 'Escherichia coli' _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21(DE3)' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pET15b _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin _struct_ref.pdbx_db_isoform 1 UNP SATB1_HUMAN Q01826 3 ;NTEVSSEIYQWVRDELKRAGISQAVFARVAFNRTQGLLSEILRKEEDPKTASQSLLVNLRAMQNFLQLPEAERDRIYQDE RERSL ; 368 ? 2 PDB 2O49 2O49 1 ? ? ? 3 PDB 2O49 2O49 2 ? ? ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 2O49 A 5 ? 89 ? Q01826 368 ? 452 ? 368 452 2 2 2O49 B 1 ? 12 ? 2O49 1 ? 12 ? 1 12 3 3 2O49 C 1 ? 12 ? 2O49 1 ? 12 ? 1 12 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 2O49 GLY A 1 ? UNP Q01826 ? ? 'CLONING ARTIFACT' 364 1 1 2O49 SER A 2 ? UNP Q01826 ? ? 'CLONING ARTIFACT' 365 2 1 2O49 HIS A 3 ? UNP Q01826 ? ? 'CLONING ARTIFACT' 366 3 1 2O49 MET A 4 ? UNP Q01826 ? ? 'CLONING ARTIFACT' 367 4 1 2O49 ARG A 90 ? UNP Q01826 ? ? 'CLONING ARTIFACT' 453 5 1 2O49 LYS A 91 ? UNP Q01826 ? ? 'CLONING ARTIFACT' 454 6 1 2O49 ARG A 92 ? UNP Q01826 ? ? 'CLONING ARTIFACT' 455 7 1 2O49 LYS A 93 ? UNP Q01826 ? ? 'CLONING ARTIFACT' 456 8 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 2O49 _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.23 _exptl_crystal.density_percent_sol 50.83 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.temp 293 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 8.00 _exptl_crystal_grow.pdbx_details ;20% PEG 20000, 0.05M TrisHCl, 0.01M magnesium chloride, 20% ethylene glycol, pH 8.00, VAPOR DIFFUSION, SITTING DROP, temperature 293K ; _exptl_crystal_grow.pdbx_pH_range . # loop_ _exptl_crystal_grow_comp.crystal_id _exptl_crystal_grow_comp.id _exptl_crystal_grow_comp.sol_id _exptl_crystal_grow_comp.name _exptl_crystal_grow_comp.volume _exptl_crystal_grow_comp.conc _exptl_crystal_grow_comp.details 1 1 1 'PEG 20000' ? ? ? 1 2 1 TrisHCl ? ? ? 1 3 1 'magnesium chloride' ? ? ? 1 4 1 'ethylene glycol' ? ? ? 1 5 1 HOH ? ? ? 1 6 2 'PEG 20000' ? ? ? 1 7 2 TrisHCl ? ? ? 1 8 2 'magnesium chloride' ? ? ? 1 9 2 HOH ? ? ? # _diffrn.id 1 _diffrn.ambient_temp 90 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'BRUKER SMART 6000' _diffrn_detector.pdbx_collection_date 2006-01-16 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.5418 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source 'ROTATING ANODE' _diffrn_source.type MACSCIENCE _diffrn_source.pdbx_synchrotron_site ? _diffrn_source.pdbx_synchrotron_beamline ? _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 1.5418 # _reflns.entry_id 2O49 _reflns.observed_criterion_sigma_F 0.0 _reflns.observed_criterion_sigma_I 0.0 _reflns.d_resolution_high 2.00 _reflns.d_resolution_low 19.64 _reflns.number_all ? _reflns.number_obs 9632 _reflns.percent_possible_obs 89.8 _reflns.pdbx_Rmerge_I_obs 0.053 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 21.6 _reflns.B_iso_Wilson_estimate 25.7 _reflns.pdbx_redundancy 3.7 _reflns.R_free_details ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _reflns_shell.d_res_high 2.00 _reflns_shell.d_res_low 2.10 _reflns_shell.percent_possible_all 55.2 _reflns_shell.Rmerge_I_obs 0.155 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 3.9 _reflns_shell.pdbx_redundancy 1.9 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all 1571 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_diffrn_id ? _reflns_shell.pdbx_ordinal 1 # _refine.entry_id 2O49 _refine.ls_d_res_high 2.00 _refine.ls_d_res_low 19.57 _refine.pdbx_ls_sigma_F 2.0 _refine.pdbx_ls_sigma_I 2.0 _refine.ls_number_reflns_all 10638 _refine.ls_number_reflns_obs 9613 _refine.ls_number_reflns_R_free 993 _refine.ls_percent_reflns_obs 90.3 _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.212 _refine.ls_R_factor_R_work 0.212 _refine.ls_R_factor_R_free 0.255 _refine.ls_redundancy_reflns_obs ? _refine.pdbx_data_cutoff_high_absF 578429.24 _refine.pdbx_data_cutoff_low_absF 0.000000 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.ls_percent_reflns_R_free 10.3 _refine.ls_R_factor_R_free_error 0.008 _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_starting_model 'PDB entry 1YSE' _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_stereochemistry_target_values 'Engh & Huber' _refine.solvent_model_details 'FLAT MODEL' _refine.solvent_model_param_bsol 77.906 _refine.solvent_model_param_ksol 0.646403 _refine.occupancy_max ? _refine.occupancy_min ? _refine.pdbx_isotropic_thermal_model RESTRAINED _refine.B_iso_mean 24.0 _refine.aniso_B[1][1] 7.81 _refine.aniso_B[1][2] 6.73 _refine.aniso_B[1][3] 1.35 _refine.aniso_B[2][2] -5.87 _refine.aniso_B[2][3] 2.28 _refine.aniso_B[3][3] -1.94 _refine.details ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_overall_ESU_R ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_analyze.entry_id 2O49 _refine_analyze.Luzzati_coordinate_error_obs 0.24 _refine_analyze.Luzzati_sigma_a_obs 0.24 _refine_analyze.Luzzati_d_res_low_obs 5.00 _refine_analyze.Luzzati_coordinate_error_free 0.29 _refine_analyze.Luzzati_sigma_a_free 0.30 _refine_analyze.Luzzati_d_res_low_free ? _refine_analyze.number_disordered_residues ? _refine_analyze.occupancy_sum_hydrogen ? _refine_analyze.occupancy_sum_non_hydrogen ? _refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION' # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 696 _refine_hist.pdbx_number_atoms_nucleic_acid 486 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 75 _refine_hist.number_atoms_total 1257 _refine_hist.d_res_high 2.00 _refine_hist.d_res_low 19.57 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function c_bond_d 0.005 ? ? ? 'X-RAY DIFFRACTION' ? c_bond_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_bond_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_d ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg 1.08 ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d 17.0 ? ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_d 1.17 ? ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_mcbond_it 1.21 1.50 ? ? 'X-RAY DIFFRACTION' ? c_mcangle_it 1.85 2.00 ? ? 'X-RAY DIFFRACTION' ? c_scbond_it 1.96 2.00 ? ? 'X-RAY DIFFRACTION' ? c_scangle_it 2.89 2.50 ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used 6 _refine_ls_shell.d_res_high 2.00 _refine_ls_shell.d_res_low 2.13 _refine_ls_shell.number_reflns_R_work 935 _refine_ls_shell.R_factor_R_work 0.268 _refine_ls_shell.percent_reflns_obs 59.0 _refine_ls_shell.R_factor_R_free 0.333 _refine_ls_shell.R_factor_R_free_error 0.031 _refine_ls_shell.percent_reflns_R_free 10.8 _refine_ls_shell.number_reflns_R_free 113 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # loop_ _pdbx_xplor_file.serial_no _pdbx_xplor_file.param_file _pdbx_xplor_file.topol_file _pdbx_xplor_file.pdbx_refine_id 1 protein_rep.param protein.top 'X-RAY DIFFRACTION' 2 dna-rna_rep.param dna-rna.top 'X-RAY DIFFRACTION' 3 water_rep.param water.top 'X-RAY DIFFRACTION' # _struct.entry_id 2O49 _struct.title 'Crystal Structure of the N-terminal CUT domain of SATB1 Bound to Matrix Attachment Region DNA' _struct.pdbx_descriptor 'DNA-binding protein SATB1/DNA' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2O49 _struct_keywords.pdbx_keywords TRANSCRIPTION/DNA _struct_keywords.text 'protein-DNA complex, transcription, TRANSCRIPTION-DNA COMPLEX' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? E N N 4 ? F N N 4 ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 GLU C 11 ? GLY C 24 ? GLU A 374 GLY A 387 1 ? 14 HELX_P HELX_P2 2 SER C 26 ? ASN C 36 ? SER A 389 ASN A 399 1 ? 11 HELX_P HELX_P3 3 THR C 38 ? GLU C 49 ? THR A 401 GLU A 412 1 ? 12 HELX_P HELX_P4 4 ASP C 51 ? ALA C 55 ? ASP A 414 ALA A 418 5 ? 5 HELX_P HELX_P5 5 SER C 56 ? GLN C 71 ? SER A 419 GLN A 434 1 ? 16 HELX_P HELX_P6 6 PRO C 73 ? ARG C 90 ? PRO A 436 ARG A 453 1 ? 18 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order hydrog1 hydrog ? ? A DG 1 N1 ? ? ? 1_555 B DC 12 N3 ? ? B DG 1 C DC 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog2 hydrog ? ? A DG 1 N2 ? ? ? 1_555 B DC 12 O2 ? ? B DG 1 C DC 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog3 hydrog ? ? A DG 1 O6 ? ? ? 1_555 B DC 12 N4 ? ? B DG 1 C DC 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog4 hydrog ? ? A DC 2 N3 ? ? ? 1_555 B DG 11 N1 ? ? B DC 2 C DG 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog5 hydrog ? ? A DC 2 N4 ? ? ? 1_555 B DG 11 O6 ? ? B DC 2 C DG 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog6 hydrog ? ? A DC 2 O2 ? ? ? 1_555 B DG 11 N2 ? ? B DC 2 C DG 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog7 hydrog ? ? A DT 3 N3 ? ? ? 1_555 B DA 10 N1 ? ? B DT 3 C DA 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog8 hydrog ? ? A DT 3 O4 ? ? ? 1_555 B DA 10 N6 ? ? B DT 3 C DA 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog9 hydrog ? ? A DA 4 N1 ? ? ? 1_555 B DT 9 N3 ? ? B DA 4 C DT 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog10 hydrog ? ? A DA 4 N6 ? ? ? 1_555 B DT 9 O4 ? ? B DA 4 C DT 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog11 hydrog ? ? A DA 5 N1 ? ? ? 1_555 B DT 8 N3 ? ? B DA 5 C DT 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog12 hydrog ? ? A DA 5 N6 ? ? ? 1_555 B DT 8 O4 ? ? B DA 5 C DT 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog13 hydrog ? ? A DT 6 N3 ? ? ? 1_555 B DA 7 N1 ? ? B DT 6 C DA 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog14 hydrog ? ? A DT 6 O4 ? ? ? 1_555 B DA 7 N6 ? ? B DT 6 C DA 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog15 hydrog ? ? A DA 7 N1 ? ? ? 1_555 B DT 6 N3 ? ? B DA 7 C DT 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog16 hydrog ? ? A DA 7 N6 ? ? ? 1_555 B DT 6 O4 ? ? B DA 7 C DT 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog17 hydrog ? ? A DT 8 N3 ? ? ? 1_555 B DA 5 N1 ? ? B DT 8 C DA 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog18 hydrog ? ? A DT 8 O4 ? ? ? 1_555 B DA 5 N6 ? ? B DT 8 C DA 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog19 hydrog ? ? A DA 9 N1 ? ? ? 1_555 B DT 4 N3 ? ? B DA 9 C DT 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog20 hydrog ? ? A DA 9 N6 ? ? ? 1_555 B DT 4 O4 ? ? B DA 9 C DT 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog21 hydrog ? ? A DT 10 N3 ? ? ? 1_555 B DA 3 N1 ? ? B DT 10 C DA 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog22 hydrog ? ? A DT 10 O4 ? ? ? 1_555 B DA 3 N6 ? ? B DT 10 C DA 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog23 hydrog ? ? A DG 11 N1 ? ? ? 1_555 B DC 2 N3 ? ? B DG 11 C DC 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog24 hydrog ? ? A DG 11 N2 ? ? ? 1_555 B DC 2 O2 ? ? B DG 11 C DC 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog25 hydrog ? ? A DG 11 O6 ? ? ? 1_555 B DC 2 N4 ? ? B DG 11 C DC 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog26 hydrog ? ? A DC 12 N3 ? ? ? 1_555 B DG 1 N1 ? ? B DC 12 C DG 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog27 hydrog ? ? A DC 12 N4 ? ? ? 1_555 B DG 1 O6 ? ? B DC 12 C DG 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog28 hydrog ? ? A DC 12 O2 ? ? ? 1_555 B DG 1 N2 ? ? B DC 12 C DG 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? # _struct_conn_type.id hydrog _struct_conn_type.criteria ? _struct_conn_type.reference ? # _database_PDB_matrix.entry_id 2O49 _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 2O49 _atom_sites.fract_transf_matrix[1][1] 0.033717 _atom_sites.fract_transf_matrix[1][2] -0.011563 _atom_sites.fract_transf_matrix[1][3] -0.000140 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.028575 _atom_sites.fract_transf_matrix[2][3] -0.008955 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.025550 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O P S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DG 1 1 1 DG GUA B . n A 1 2 DC 2 2 2 DC CYT B . n A 1 3 DT 3 3 3 DT THY B . n A 1 4 DA 4 4 4 DA ADE B . n A 1 5 DA 5 5 5 DA ADE B . n A 1 6 DT 6 6 6 DT THY B . n A 1 7 DA 7 7 7 DA ADE B . n A 1 8 DT 8 8 8 DT THY B . n A 1 9 DA 9 9 9 DA ADE B . n A 1 10 DT 10 10 10 DT THY B . n A 1 11 DG 11 11 11 DG GUA B . n A 1 12 DC 12 12 12 DC CYT B . n B 2 1 DG 1 1 1 DG GUA C . n B 2 2 DC 2 2 2 DC CYT C . n B 2 3 DA 3 3 3 DA ADE C . n B 2 4 DT 4 4 4 DT THY C . n B 2 5 DA 5 5 5 DA ADE C . n B 2 6 DT 6 6 6 DT THY C . n B 2 7 DA 7 7 7 DA ADE C . n B 2 8 DT 8 8 8 DT THY C . n B 2 9 DT 9 9 9 DT THY C . n B 2 10 DA 10 10 10 DA ADE C . n B 2 11 DG 11 11 11 DG GUA C . n B 2 12 DC 12 12 12 DC CYT C . n C 3 1 GLY 1 364 ? ? ? A . n C 3 2 SER 2 365 ? ? ? A . n C 3 3 HIS 3 366 ? ? ? A . n C 3 4 MET 4 367 ? ? ? A . n C 3 5 ASN 5 368 ? ? ? A . n C 3 6 THR 6 369 ? ? ? A . n C 3 7 GLU 7 370 370 GLU GLU A . n C 3 8 VAL 8 371 371 VAL VAL A . n C 3 9 SER 9 372 372 SER SER A . n C 3 10 SER 10 373 373 SER SER A . n C 3 11 GLU 11 374 374 GLU GLU A . n C 3 12 ILE 12 375 375 ILE ILE A . n C 3 13 TYR 13 376 376 TYR TYR A . n C 3 14 GLN 14 377 377 GLN GLN A . n C 3 15 TRP 15 378 378 TRP TRP A . n C 3 16 VAL 16 379 379 VAL VAL A . n C 3 17 ARG 17 380 380 ARG ARG A . n C 3 18 ASP 18 381 381 ASP ASP A . n C 3 19 GLU 19 382 382 GLU GLU A . n C 3 20 LEU 20 383 383 LEU LEU A . n C 3 21 LYS 21 384 384 LYS LYS A . n C 3 22 ARG 22 385 385 ARG ARG A . n C 3 23 ALA 23 386 386 ALA ALA A . n C 3 24 GLY 24 387 387 GLY GLY A . n C 3 25 ILE 25 388 388 ILE ILE A . n C 3 26 SER 26 389 389 SER SER A . n C 3 27 GLN 27 390 390 GLN GLN A . n C 3 28 ALA 28 391 391 ALA ALA A . n C 3 29 VAL 29 392 392 VAL VAL A . n C 3 30 PHE 30 393 393 PHE PHE A . n C 3 31 ALA 31 394 394 ALA ALA A . n C 3 32 ARG 32 395 395 ARG ARG A . n C 3 33 VAL 33 396 396 VAL VAL A . n C 3 34 ALA 34 397 397 ALA ALA A . n C 3 35 PHE 35 398 398 PHE PHE A . n C 3 36 ASN 36 399 399 ASN ASN A . n C 3 37 ARG 37 400 400 ARG ARG A . n C 3 38 THR 38 401 401 THR THR A . n C 3 39 GLN 39 402 402 GLN GLN A . n C 3 40 GLY 40 403 403 GLY GLY A . n C 3 41 LEU 41 404 404 LEU LEU A . n C 3 42 LEU 42 405 405 LEU LEU A . n C 3 43 SER 43 406 406 SER SER A . n C 3 44 GLU 44 407 407 GLU GLU A . n C 3 45 ILE 45 408 408 ILE ILE A . n C 3 46 LEU 46 409 409 LEU LEU A . n C 3 47 ARG 47 410 410 ARG ARG A . n C 3 48 LYS 48 411 411 LYS LYS A . n C 3 49 GLU 49 412 412 GLU GLU A . n C 3 50 GLU 50 413 413 GLU GLU A . n C 3 51 ASP 51 414 414 ASP ASP A . n C 3 52 PRO 52 415 415 PRO PRO A . n C 3 53 LYS 53 416 416 LYS LYS A . n C 3 54 THR 54 417 417 THR THR A . n C 3 55 ALA 55 418 418 ALA ALA A . n C 3 56 SER 56 419 419 SER SER A . n C 3 57 GLN 57 420 420 GLN GLN A . n C 3 58 SER 58 421 421 SER SER A . n C 3 59 LEU 59 422 422 LEU LEU A . n C 3 60 LEU 60 423 423 LEU LEU A . n C 3 61 VAL 61 424 424 VAL VAL A . n C 3 62 ASN 62 425 425 ASN ASN A . n C 3 63 LEU 63 426 426 LEU LEU A . n C 3 64 ARG 64 427 427 ARG ARG A . n C 3 65 ALA 65 428 428 ALA ALA A . n C 3 66 MET 66 429 429 MET MET A . n C 3 67 GLN 67 430 430 GLN GLN A . n C 3 68 ASN 68 431 431 ASN ASN A . n C 3 69 PHE 69 432 432 PHE PHE A . n C 3 70 LEU 70 433 433 LEU LEU A . n C 3 71 GLN 71 434 434 GLN GLN A . n C 3 72 LEU 72 435 435 LEU LEU A . n C 3 73 PRO 73 436 436 PRO PRO A . n C 3 74 GLU 74 437 437 GLU GLU A . n C 3 75 ALA 75 438 438 ALA ALA A . n C 3 76 GLU 76 439 439 GLU GLU A . n C 3 77 ARG 77 440 440 ARG ARG A . n C 3 78 ASP 78 441 441 ASP ASP A . n C 3 79 ARG 79 442 442 ARG ARG A . n C 3 80 ILE 80 443 443 ILE ILE A . n C 3 81 TYR 81 444 444 TYR TYR A . n C 3 82 GLN 82 445 445 GLN GLN A . n C 3 83 ASP 83 446 446 ASP ASP A . n C 3 84 GLU 84 447 447 GLU GLU A . n C 3 85 ARG 85 448 448 ARG ARG A . n C 3 86 GLU 86 449 449 GLU GLU A . n C 3 87 ARG 87 450 450 ARG ARG A . n C 3 88 SER 88 451 451 SER SER A . n C 3 89 LEU 89 452 452 LEU LEU A . n C 3 90 ARG 90 453 453 ARG ARG A . n C 3 91 LYS 91 454 ? ? ? A . n C 3 92 ARG 92 455 ? ? ? A . n C 3 93 LYS 93 456 ? ? ? A . n # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2007-08-14 2 'Structure model' 1 1 2011-07-13 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # _pdbx_audit_revision_group.ordinal 1 _pdbx_audit_revision_group.revision_ordinal 2 _pdbx_audit_revision_group.data_content_type 'Structure model' _pdbx_audit_revision_group.group 'Version format compliance' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal SMART 'data collection' . ? 1 CNS refinement 1.1 ? 2 SAINT 'data reduction' PLUS ? 3 SCALA 'data scaling' . ? 4 CNS phasing 1.1 ? 5 # _pdbx_validate_torsion.id 1 _pdbx_validate_torsion.PDB_model_num 1 _pdbx_validate_torsion.auth_comp_id PHE _pdbx_validate_torsion.auth_asym_id A _pdbx_validate_torsion.auth_seq_id 398 _pdbx_validate_torsion.PDB_ins_code ? _pdbx_validate_torsion.label_alt_id ? _pdbx_validate_torsion.phi -142.30 _pdbx_validate_torsion.psi 25.42 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A GLY 364 ? C GLY 1 2 1 Y 1 A SER 365 ? C SER 2 3 1 Y 1 A HIS 366 ? C HIS 3 4 1 Y 1 A MET 367 ? C MET 4 5 1 Y 1 A ASN 368 ? C ASN 5 6 1 Y 1 A THR 369 ? C THR 6 7 1 Y 1 A LYS 454 ? C LYS 91 8 1 Y 1 A ARG 455 ? C ARG 92 9 1 Y 1 A LYS 456 ? C LYS 93 # _ndb_struct_conf_na.entry_id 2O49 _ndb_struct_conf_na.feature 'b-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A DG 1 1_555 B DC 12 1_555 -0.134 -0.130 -0.267 -5.269 -0.243 -1.387 1 B_DG1:DC12_C B 1 ? C 12 ? 19 1 1 A DC 2 1_555 B DG 11 1_555 0.209 0.000 0.074 2.054 -7.843 2.773 2 B_DC2:DG11_C B 2 ? C 11 ? 19 1 1 A DT 3 1_555 B DA 10 1_555 -0.069 0.033 -0.131 4.760 -16.333 -4.512 3 B_DT3:DA10_C B 3 ? C 10 ? 20 1 1 A DA 4 1_555 B DT 9 1_555 -0.105 -0.037 -0.210 -1.398 -9.774 -0.812 4 B_DA4:DT9_C B 4 ? C 9 ? 20 1 1 A DA 5 1_555 B DT 8 1_555 -0.020 -0.104 0.111 6.160 -9.178 5.752 5 B_DA5:DT8_C B 5 ? C 8 ? 20 1 1 A DT 6 1_555 B DA 7 1_555 0.023 -0.031 -0.205 14.565 -10.088 4.607 6 B_DT6:DA7_C B 6 ? C 7 ? 20 1 1 A DA 7 1_555 B DT 6 1_555 0.056 0.019 0.111 4.104 -11.271 0.592 7 B_DA7:DT6_C B 7 ? C 6 ? 20 1 1 A DT 8 1_555 B DA 5 1_555 0.096 -0.087 -0.239 11.765 -7.347 3.871 8 B_DT8:DA5_C B 8 ? C 5 ? 20 1 1 A DA 9 1_555 B DT 4 1_555 -0.130 -0.084 -0.264 -9.767 -10.298 4.274 9 B_DA9:DT4_C B 9 ? C 4 ? 20 1 1 A DT 10 1_555 B DA 3 1_555 -0.012 -0.072 0.171 -5.887 -12.097 3.164 10 B_DT10:DA3_C B 10 ? C 3 ? 20 1 1 A DG 11 1_555 B DC 2 1_555 -0.127 -0.028 0.037 -3.482 -5.666 -4.957 11 B_DG11:DC2_C B 11 ? C 2 ? 19 1 1 A DC 12 1_555 B DG 1 1_555 0.126 -0.088 -0.257 -0.019 -3.648 1.800 12 B_DC12:DG1_C B 12 ? C 1 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A DG 1 1_555 B DC 12 1_555 A DC 2 1_555 B DG 11 1_555 0.588 -0.539 3.095 -1.122 2.852 34.551 -1.313 -1.148 3.022 4.790 1.884 34.683 1 BB_DG1DC2:DG11DC12_CC B 1 ? C 12 ? B 2 ? C 11 ? 1 A DC 2 1_555 B DG 11 1_555 A DT 3 1_555 B DA 10 1_555 -0.621 0.255 3.235 2.562 1.207 33.571 0.247 1.482 3.187 2.085 -4.426 33.687 2 BB_DC2DT3:DA10DG11_CC B 2 ? C 11 ? B 3 ? C 10 ? 1 A DT 3 1_555 B DA 10 1_555 A DA 4 1_555 B DT 9 1_555 1.172 1.108 3.408 3.369 -1.339 42.408 1.669 -1.258 3.452 -1.848 -4.647 42.556 3 BB_DT3DA4:DT9DA10_CC B 3 ? C 10 ? B 4 ? C 9 ? 1 A DA 4 1_555 B DT 9 1_555 A DA 5 1_555 B DT 8 1_555 -0.212 0.163 3.063 -2.853 7.555 30.557 -1.027 -0.111 3.023 14.030 5.297 31.582 4 BB_DA4DA5:DT8DT9_CC B 4 ? C 9 ? B 5 ? C 8 ? 1 A DA 5 1_555 B DT 8 1_555 A DT 6 1_555 B DA 7 1_555 0.265 -0.417 3.042 2.149 4.779 28.352 -1.822 -0.089 2.945 9.653 -4.341 28.823 5 BB_DA5DT6:DA7DT8_CC B 5 ? C 8 ? B 6 ? C 7 ? 1 A DT 6 1_555 B DA 7 1_555 A DA 7 1_555 B DT 6 1_555 -0.384 0.729 3.449 -1.960 2.656 44.504 0.702 0.314 3.497 3.502 2.583 44.620 6 BB_DT6DA7:DT6DA7_CC B 6 ? C 7 ? B 7 ? C 6 ? 1 A DA 7 1_555 B DT 6 1_555 A DT 8 1_555 B DA 5 1_555 0.511 -0.630 3.098 2.244 -0.691 33.511 -0.983 -0.534 3.137 -1.197 -3.886 33.590 7 BB_DA7DT8:DA5DT6_CC B 7 ? C 6 ? B 8 ? C 5 ? 1 A DT 8 1_555 B DA 5 1_555 A DA 9 1_555 B DT 4 1_555 0.117 -0.344 3.697 1.016 4.712 36.278 -1.277 -0.029 3.628 7.527 -1.622 36.586 8 BB_DT8DA9:DT4DA5_CC B 8 ? C 5 ? B 9 ? C 4 ? 1 A DA 9 1_555 B DT 4 1_555 A DT 10 1_555 B DA 3 1_555 -0.277 -0.863 3.191 -2.873 -0.766 34.204 -1.344 0.028 3.221 -1.299 4.873 34.329 9 BB_DA9DT10:DA3DT4_CC B 9 ? C 4 ? B 10 ? C 3 ? 1 A DT 10 1_555 B DA 3 1_555 A DG 11 1_555 B DC 2 1_555 -0.429 0.144 3.186 -0.626 4.955 33.454 -0.535 0.639 3.182 8.548 1.080 33.814 10 BB_DT10DG11:DC2DA3_CC B 10 ? C 3 ? B 11 ? C 2 ? 1 A DG 11 1_555 B DC 2 1_555 A DC 12 1_555 B DG 1 1_555 0.897 -0.256 3.189 4.064 0.113 35.833 -0.429 -0.879 3.267 0.183 -6.579 36.055 11 BB_DG11DC12:DG1DC2_CC B 11 ? C 2 ? B 12 ? C 1 ? # _pdbx_entity_nonpoly.entity_id 4 _pdbx_entity_nonpoly.name water _pdbx_entity_nonpoly.comp_id HOH # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 HOH 1 13 7 HOH HOH B . D 4 HOH 2 14 10 HOH HOH B . D 4 HOH 3 15 17 HOH HOH B . D 4 HOH 4 16 18 HOH HOH B . D 4 HOH 5 17 20 HOH HOH B . D 4 HOH 6 18 22 HOH HOH B . D 4 HOH 7 19 25 HOH HOH B . D 4 HOH 8 20 30 HOH HOH B . D 4 HOH 9 21 31 HOH HOH B . D 4 HOH 10 22 40 HOH HOH B . D 4 HOH 11 23 46 HOH HOH B . D 4 HOH 12 24 48 HOH HOH B . D 4 HOH 13 25 53 HOH HOH B . D 4 HOH 14 26 56 HOH HOH B . D 4 HOH 15 27 57 HOH HOH B . D 4 HOH 16 28 58 HOH HOH B . D 4 HOH 17 29 68 HOH HOH B . D 4 HOH 18 30 71 HOH HOH B . E 4 HOH 1 13 1 HOH HOH C . E 4 HOH 2 14 2 HOH HOH C . E 4 HOH 3 15 5 HOH HOH C . E 4 HOH 4 16 6 HOH HOH C . E 4 HOH 5 17 16 HOH HOH C . E 4 HOH 6 18 24 HOH HOH C . E 4 HOH 7 19 34 HOH HOH C . E 4 HOH 8 20 36 HOH HOH C . E 4 HOH 9 21 42 HOH HOH C . E 4 HOH 10 22 44 HOH HOH C . E 4 HOH 11 23 47 HOH HOH C . E 4 HOH 12 24 49 HOH HOH C . E 4 HOH 13 25 64 HOH HOH C . E 4 HOH 14 26 66 HOH HOH C . E 4 HOH 15 27 67 HOH HOH C . E 4 HOH 16 28 72 HOH HOH C . E 4 HOH 17 29 73 HOH HOH C . F 4 HOH 1 3 3 HOH HOH A . F 4 HOH 2 4 4 HOH HOH A . F 4 HOH 3 8 8 HOH HOH A . F 4 HOH 4 9 9 HOH HOH A . F 4 HOH 5 11 11 HOH HOH A . F 4 HOH 6 12 12 HOH HOH A . F 4 HOH 7 13 13 HOH HOH A . F 4 HOH 8 14 14 HOH HOH A . F 4 HOH 9 15 15 HOH HOH A . F 4 HOH 10 19 19 HOH HOH A . F 4 HOH 11 21 21 HOH HOH A . F 4 HOH 12 23 23 HOH HOH A . F 4 HOH 13 26 26 HOH HOH A . F 4 HOH 14 27 27 HOH HOH A . F 4 HOH 15 28 28 HOH HOH A . F 4 HOH 16 29 29 HOH HOH A . F 4 HOH 17 32 32 HOH HOH A . F 4 HOH 18 33 33 HOH HOH A . F 4 HOH 19 35 35 HOH HOH A . F 4 HOH 20 37 37 HOH HOH A . F 4 HOH 21 38 38 HOH HOH A . F 4 HOH 22 39 39 HOH HOH A . F 4 HOH 23 41 41 HOH HOH A . F 4 HOH 24 43 43 HOH HOH A . F 4 HOH 25 45 45 HOH HOH A . F 4 HOH 26 50 50 HOH HOH A . F 4 HOH 27 51 51 HOH HOH A . F 4 HOH 28 52 52 HOH HOH A . F 4 HOH 29 54 54 HOH HOH A . F 4 HOH 30 55 55 HOH HOH A . F 4 HOH 31 59 59 HOH HOH A . F 4 HOH 32 60 60 HOH HOH A . F 4 HOH 33 61 61 HOH HOH A . F 4 HOH 34 62 62 HOH HOH A . F 4 HOH 35 63 63 HOH HOH A . F 4 HOH 36 65 65 HOH HOH A . F 4 HOH 37 69 69 HOH HOH A . F 4 HOH 38 70 70 HOH HOH A . F 4 HOH 39 74 74 HOH HOH A . F 4 HOH 40 75 75 HOH HOH A . #