HEADER PROTEIN BINDING 04-DEC-06 2O4E TITLE THE SOLUTION STRUCTURE OF A PROTEIN-PROTEIN INTERACTION MODULE FROM A TITLE 2 FAMILY 84 GLYCOSIDE HYDROLASE OF CLOSTRIDIUM PERFRINGENS COMPND MOL_ID: 1; COMPND 2 MOLECULE: O-GLCNACASE NAGJ; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: PUTATIVE PROTEIN-PROTEIN INTERACTION MODULE; COMPND 5 SYNONYM: BETA-HEXOSAMINIDASE, N- ACETYL-BETA-GLUCOSAMINIDASE, BETA-N- COMPND 6 ACETYLHEXOSAMINIDASE, HEXOSAMINIDASE B, GH84; COMPND 7 EC: 3.2.1.52; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CLOSTRIDIUM PERFRINGENS; SOURCE 3 ORGANISM_TAXID: 1502; SOURCE 4 GENE: NAGJ; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET-28B KEYWDS BETA-BARREL, PROTEIN BINDING EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR S.CHITAYAT,J.J.ADAMS,K.GREGG,A.B.BORASTON,S.P.SMITH REVDAT 5 14-JUN-23 2O4E 1 REMARK REVDAT 4 20-OCT-21 2O4E 1 SEQADV REVDAT 3 05-FEB-20 2O4E 1 REMARK SEQADV ATOM REVDAT 2 30-DEC-08 2O4E 1 JRNL VERSN REVDAT 1 06-NOV-07 2O4E 0 JRNL AUTH S.CHITAYAT,K.GREGG,J.J.ADAMS,E.FICKO-BLEAN,E.A.BAYER, JRNL AUTH 2 A.B.BORASTON,S.P.SMITH JRNL TITL THREE-DIMENSIONAL STRUCTURE OF A PUTATIVE NON-CELLULOSOMAL JRNL TITL 2 COHESIN MODULE FROM A CLOSTRIDIUM PERFRINGENS FAMILY 84 JRNL TITL 3 GLYCOSIDE HYDROLASE. JRNL REF J.MOL.BIOL. V. 375 20 2008 JRNL REFN ISSN 0022-2836 JRNL PMID 17999932 JRNL DOI 10.1016/J.JMB.2007.10.031 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS REMARK 3 AUTHORS : BRUNGER, A.T. ET AL. REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2O4E COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 11-DEC-06. REMARK 100 THE DEPOSITION ID IS D_1000040672. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : NULL REMARK 210 PRESSURE : 1 ATM REMARK 210 SAMPLE CONTENTS : 1MM U-15N,13C X82, 25MM HEPES, REMARK 210 50MM NACL, 5MM CACL2, PH 7.0 REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D C13-EDITED NOESY-HSQC; HCCH REMARK 210 -TOCSY; 3D HNCACB; 3D CBCA(CO)NH; REMARK 210 3D C(CO)NH; 3D H(CCO)NH; 3D N15- REMARK 210 EDITED NOESY-HSQC; 3D HNHA REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ; 600 MHZ REMARK 210 SPECTROMETER MODEL : INOVA REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRPIPE, NMRVIEW REMARK 210 METHOD USED : NULL REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 200 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 H GLY A 46 O ALA A 125 1.52 REMARK 500 H LEU A 134 O LYS A 156 1.54 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 HIS A 5 -42.20 -171.54 REMARK 500 1 PRO A 16 132.41 -32.30 REMARK 500 1 GLU A 27 -171.00 60.16 REMARK 500 1 VAL A 45 131.82 -28.55 REMARK 500 1 ASN A 60 37.83 102.34 REMARK 500 1 TYR A 72 -167.30 -114.59 REMARK 500 1 VAL A 80 -74.60 -132.30 REMARK 500 1 ASP A 85 -158.72 -93.99 REMARK 500 1 ASP A 86 36.68 -94.36 REMARK 500 1 LYS A 99 122.86 -173.77 REMARK 500 1 LEU A 107 31.15 -94.94 REMARK 500 1 PRO A 111 173.67 -53.36 REMARK 500 1 ALA A 114 169.17 56.49 REMARK 500 1 ALA A 119 132.69 -172.69 REMARK 500 1 LYS A 128 157.55 -46.02 REMARK 500 1 ALA A 129 59.98 -169.77 REMARK 500 1 SER A 132 70.91 -68.14 REMARK 500 1 THR A 137 -166.43 -101.55 REMARK 500 1 ASN A 138 22.86 41.94 REMARK 500 1 GLU A 150 108.29 -48.30 REMARK 500 1 ALA A 152 -144.59 -59.50 REMARK 500 1 THR A 164 -143.46 -80.03 REMARK 500 2 HIS A 6 33.48 -152.39 REMARK 500 2 HIS A 8 175.87 60.43 REMARK 500 2 HIS A 9 166.54 60.52 REMARK 500 2 HIS A 10 -175.05 -176.61 REMARK 500 2 SER A 11 105.51 60.70 REMARK 500 2 PRO A 16 101.97 -32.35 REMARK 500 2 ARG A 17 -68.45 -153.44 REMARK 500 2 SER A 19 168.85 60.35 REMARK 500 2 GLU A 27 -176.70 -61.90 REMARK 500 2 ALA A 29 77.27 -175.24 REMARK 500 2 VAL A 45 124.60 -29.27 REMARK 500 2 ASN A 60 20.02 102.68 REMARK 500 2 VAL A 80 -84.02 -130.60 REMARK 500 2 ASP A 85 -161.30 -77.18 REMARK 500 2 ASP A 86 37.77 -95.59 REMARK 500 2 LYS A 94 95.14 -55.02 REMARK 500 2 LYS A 99 120.80 -173.51 REMARK 500 2 VAL A 117 105.22 -50.86 REMARK 500 2 LYS A 128 160.82 -39.66 REMARK 500 2 ALA A 129 60.80 -177.41 REMARK 500 2 SER A 132 69.93 -69.08 REMARK 500 2 THR A 137 -163.86 -111.67 REMARK 500 2 ASN A 138 21.55 42.89 REMARK 500 2 SER A 139 96.88 -69.22 REMARK 500 2 GLU A 150 97.39 -48.62 REMARK 500 2 ALA A 152 -148.85 -57.56 REMARK 500 3 SER A 4 -56.31 -130.29 REMARK 500 3 HIS A 6 120.67 -173.34 REMARK 500 REMARK 500 THIS ENTRY HAS 566 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 7270 RELATED DB: BMRB DBREF 2O4E A 24 165 UNP Q0TR53 OGA_CLOP1 768 909 SEQADV 2O4E MET A 1 UNP Q0TR53 EXPRESSION TAG SEQADV 2O4E GLY A 2 UNP Q0TR53 EXPRESSION TAG SEQADV 2O4E SER A 3 UNP Q0TR53 EXPRESSION TAG SEQADV 2O4E SER A 4 UNP Q0TR53 EXPRESSION TAG SEQADV 2O4E HIS A 5 UNP Q0TR53 EXPRESSION TAG SEQADV 2O4E HIS A 6 UNP Q0TR53 EXPRESSION TAG SEQADV 2O4E HIS A 7 UNP Q0TR53 EXPRESSION TAG SEQADV 2O4E HIS A 8 UNP Q0TR53 EXPRESSION TAG SEQADV 2O4E HIS A 9 UNP Q0TR53 EXPRESSION TAG SEQADV 2O4E HIS A 10 UNP Q0TR53 EXPRESSION TAG SEQADV 2O4E SER A 11 UNP Q0TR53 EXPRESSION TAG SEQADV 2O4E SER A 12 UNP Q0TR53 EXPRESSION TAG SEQADV 2O4E GLY A 13 UNP Q0TR53 EXPRESSION TAG SEQADV 2O4E LEU A 14 UNP Q0TR53 EXPRESSION TAG SEQADV 2O4E VAL A 15 UNP Q0TR53 EXPRESSION TAG SEQADV 2O4E PRO A 16 UNP Q0TR53 EXPRESSION TAG SEQADV 2O4E ARG A 17 UNP Q0TR53 EXPRESSION TAG SEQADV 2O4E GLY A 18 UNP Q0TR53 EXPRESSION TAG SEQADV 2O4E SER A 19 UNP Q0TR53 EXPRESSION TAG SEQADV 2O4E HIS A 20 UNP Q0TR53 EXPRESSION TAG SEQADV 2O4E MET A 21 UNP Q0TR53 EXPRESSION TAG SEQADV 2O4E ALA A 22 UNP Q0TR53 EXPRESSION TAG SEQADV 2O4E SER A 23 UNP Q0TR53 EXPRESSION TAG SEQADV 2O4E ALA A 28 UNP Q0TR53 ASN 772 ENGINEERED MUTATION SEQRES 1 A 165 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 165 LEU VAL PRO ARG GLY SER HIS MET ALA SER LYS LEU LYS SEQRES 3 A 165 GLU ALA ALA GLU VAL THR GLY SER VAL SER LEU GLU ALA SEQRES 4 A 165 LEU GLU GLU VAL GLN VAL GLY GLU ASN LEU GLU VAL GLY SEQRES 5 A 165 VAL GLY ILE ASP GLU LEU VAL ASN ALA GLU ALA PHE ALA SEQRES 6 A 165 TYR ASP PHE THR LEU ASN TYR ASP GLU ASN ALA PHE GLU SEQRES 7 A 165 TYR VAL GLU ALA ILE SER ASP ASP GLY VAL PHE VAL ASN SEQRES 8 A 165 ALA LYS LYS ILE GLU ASP GLY LYS VAL ARG VAL LEU VAL SEQRES 9 A 165 SER SER LEU THR GLY GLU PRO LEU PRO ALA LYS GLU VAL SEQRES 10 A 165 LEU ALA LYS VAL VAL LEU ARG ALA GLU ALA LYS ALA GLU SEQRES 11 A 165 GLY SER ASN LEU SER VAL THR ASN SER SER VAL GLY ASP SEQRES 12 A 165 GLY GLU GLY LEU VAL HIS GLU ILE ALA GLY THR GLU LYS SEQRES 13 A 165 THR VAL ASN ILE ILE GLU GLY THR SER SHEET 1 A 5 VAL A 88 GLU A 96 0 SHEET 2 A 5 LYS A 99 SER A 106 -1 O ARG A 101 N LYS A 93 SHEET 3 A 5 TYR A 66 ASN A 71 -1 N TYR A 66 O VAL A 104 SHEET 4 A 5 LEU A 134 VAL A 141 -1 O SER A 140 N ASP A 67 SHEET 5 A 5 THR A 154 LYS A 156 -1 O THR A 154 N VAL A 136 SHEET 1 B 2 TYR A 79 ILE A 83 0 SHEET 2 B 2 LYS A 120 LEU A 123 -1 O LYS A 120 N ILE A 83 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1