data_2O4F # _entry.id 2O4F # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.377 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 2O4F pdb_00002o4f 10.2210/pdb2o4f/pdb NDB UD0073 ? ? RCSB RCSB040673 ? ? WWPDB D_1000040673 ? ? # _pdbx_database_status.entry_id 2O4F _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2006-12-04 _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Creze, C.' 1 'Rinaldi, B.' 2 'Haser, R.' 3 'Bouvet, P.' 4 'Gouet, P.' 5 # _citation.id primary _citation.title 'Structure of a d(TGGGGT) quadruplex crystallized in the presence of Li+ ions.' _citation.journal_abbrev 'Acta Crystallogr.,Sect.D' _citation.journal_volume 63 _citation.page_first 682 _citation.page_last 688 _citation.year 2007 _citation.journal_id_ASTM ABCRE6 _citation.country DK _citation.journal_id_ISSN 0907-4449 _citation.journal_id_CSD 0766 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 17505106 _citation.pdbx_database_id_DOI 10.1107/S0907444907013315 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Creze, C.' 1 ? primary 'Rinaldi, B.' 2 ? primary 'Haser, R.' 3 ? primary 'Bouvet, P.' 4 ? primary 'Gouet, P.' 5 ? # _cell.entry_id 2O4F _cell.length_a 28.920 _cell.length_b 57.370 _cell.length_c 35.920 _cell.angle_alpha 90.00 _cell.angle_beta 108.00 _cell.angle_gamma 90.00 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 2O4F _symmetry.space_group_name_H-M 'P 1 21 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn "5'-D(*TP*GP*GP*GP*GP*T)-3'" 1880.251 8 ? ? ? ? 2 non-polymer syn 'SODIUM ION' 22.990 7 ? ? ? ? 3 non-polymer syn 'LITHIUM ION' 6.941 1 ? ? ? ? 4 water nat water 18.015 228 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type polydeoxyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code '(DT)(DG)(DG)(DG)(DG)(DT)' _entity_poly.pdbx_seq_one_letter_code_can TGGGGT _entity_poly.pdbx_strand_id A,B,C,D,E,F,G,H _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DT n 1 2 DG n 1 3 DG n 1 4 DG n 1 5 DG n 1 6 DT n # _struct_ref.id 1 _struct_ref.entity_id 1 _struct_ref.db_name PDB _struct_ref.db_code 2O4F _struct_ref.pdbx_db_accession 2O4F _struct_ref.pdbx_align_begin ? _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_db_isoform ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 2O4F A 1 ? 6 ? 2O4F 1 ? 6 ? 1 6 2 1 2O4F B 1 ? 6 ? 2O4F 11 ? 16 ? 11 16 3 1 2O4F C 1 ? 6 ? 2O4F 21 ? 26 ? 21 26 4 1 2O4F D 1 ? 6 ? 2O4F 31 ? 36 ? 31 36 5 1 2O4F E 1 ? 6 ? 2O4F 41 ? 46 ? 41 46 6 1 2O4F F 1 ? 6 ? 2O4F 51 ? 56 ? 51 56 7 1 2O4F G 1 ? 6 ? 2O4F 61 ? 66 ? 61 66 8 1 2O4F H 1 ? 6 ? 2O4F 71 ? 76 ? 71 76 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 HOH non-polymer . WATER ? 'H2 O' 18.015 LI non-polymer . 'LITHIUM ION' ? 'Li 1' 6.941 NA non-polymer . 'SODIUM ION' ? 'Na 1' 22.990 # _exptl.crystals_number 1 _exptl.entry_id 2O4F _exptl.method 'X-RAY DIFFRACTION' # _exptl_crystal.id 1 _exptl_crystal.density_Matthews 1.82 _exptl_crystal.density_meas ? _exptl_crystal.density_percent_sol 32.49 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.pH 6.0 _exptl_crystal_grow.temp 277 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pdbx_details ;1.8 M lithium sulphate, 0.01 M magnesium sulphate, 0.05 M sodium cacodylate, pH 6.0, VAPOR DIFFUSION, HANGING DROP, temperature 277K ; _exptl_crystal_grow.pdbx_pH_range . # loop_ _exptl_crystal_grow_comp.crystal_id _exptl_crystal_grow_comp.id _exptl_crystal_grow_comp.sol_id _exptl_crystal_grow_comp.name _exptl_crystal_grow_comp.conc _exptl_crystal_grow_comp.volume _exptl_crystal_grow_comp.details 1 1 1 'lithium sulphate' ? ? ? 1 2 1 'magnesium sulphate' ? ? ? 1 3 1 'sodium cacodylate' ? ? ? 1 4 1 H2O ? ? ? 1 5 2 'lithium sulphate' ? ? ? 1 6 2 'magnesium sulphate' ? ? ? 1 7 2 'sodium cacodylate' ? ? ? 1 8 2 H2O ? ? ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type MARRESEARCH _diffrn_detector.pdbx_collection_date 2006-07-16 _diffrn_detector.details mirrors # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.monochromator 'horizontally diffracting Si (111)' _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.8726 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'ESRF BEAMLINE ID23-2' _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 0.8726 _diffrn_source.pdbx_synchrotron_site ESRF _diffrn_source.pdbx_synchrotron_beamline ID23-2 # _reflns.entry_id 2O4F _reflns.B_iso_Wilson_estimate 12.00 _reflns.observed_criterion_sigma_F 0 _reflns.observed_criterion_sigma_I -3 _reflns.d_resolution_high 1.5 _reflns.d_resolution_low 15 _reflns.number_all 18195 _reflns.number_obs 17547 _reflns.percent_possible_obs 96.4 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rsym_value 0.142 _reflns.pdbx_netI_over_sigmaI 7.05 _reflns.pdbx_redundancy 1.7 _reflns.R_free_details ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _reflns_shell.d_res_high 1.500 _reflns_shell.d_res_low 1.590 _reflns_shell.percent_possible_obs ? _reflns_shell.percent_possible_all 93.4 _reflns_shell.Rmerge_I_obs ? _reflns_shell.meanI_over_sigI_obs 2.71 _reflns_shell.pdbx_Rsym_value 0.227 _reflns_shell.pdbx_redundancy 1.7 _reflns_shell.number_unique_all 2977 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_diffrn_id ? _reflns_shell.pdbx_ordinal 1 # _refine.entry_id 2O4F _refine.ls_d_res_high 1.500 _refine.ls_d_res_low 14.680 _refine.pdbx_ls_sigma_F 0.00 _refine.pdbx_data_cutoff_high_absF 690707.250 _refine.pdbx_data_cutoff_low_absF 0.000 _refine.ls_percent_reflns_obs 96.700 _refine.ls_number_reflns_obs 17319 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_R_Free_selection_details RANDOM _refine.ls_R_factor_R_work 0.204 _refine.ls_R_factor_R_free 0.257 _refine.ls_percent_reflns_R_free 4.900 _refine.ls_number_reflns_R_free 851 _refine.ls_R_factor_R_free_error 0.009 _refine.B_iso_mean 13.000 _refine.solvent_model_param_bsol 37.627 _refine.solvent_model_param_ksol 0.355 _refine.pdbx_isotropic_thermal_model RESTRAINED _refine.aniso_B[1][1] 0.260 _refine.aniso_B[2][2] 4.520 _refine.aniso_B[3][3] -4.780 _refine.aniso_B[1][2] 0.000 _refine.aniso_B[1][3] -1.230 _refine.aniso_B[2][3] 0.000 _refine.solvent_model_details 'FLAT MODEL' _refine.pdbx_ls_sigma_I -3 _refine.ls_number_reflns_all 17910 _refine.ls_R_factor_all 0.206 _refine.ls_R_factor_obs 0.206 _refine.ls_redundancy_reflns_obs ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_starting_model 'PDB ENTRY 352D' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_stereochemistry_target_values 'Engh & Huber' _refine.occupancy_max ? _refine.occupancy_min ? _refine.details ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_phase_error ? _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_analyze.entry_id 2O4F _refine_analyze.Luzzati_coordinate_error_obs 0.180 _refine_analyze.Luzzati_sigma_a_obs 0.250 _refine_analyze.Luzzati_d_res_low_obs 5.000 _refine_analyze.Luzzati_coordinate_error_free 0.230 _refine_analyze.Luzzati_sigma_a_free 0.280 _refine_analyze.Luzzati_d_res_low_free ? _refine_analyze.number_disordered_residues ? _refine_analyze.occupancy_sum_non_hydrogen ? _refine_analyze.occupancy_sum_hydrogen ? _refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION' # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 1000 _refine_hist.pdbx_number_atoms_ligand 8 _refine_hist.number_atoms_solvent 228 _refine_hist.number_atoms_total 1236 _refine_hist.d_res_high 1.500 _refine_hist.d_res_low 14.680 # loop_ _refine_ls_restr.type _refine_ls_restr.number _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function c_bond_d ? 0.013 ? ? 'X-RAY DIFFRACTION' ? c_angle_deg ? 1.600 ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d ? 0.000 ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_d ? 1.530 ? ? 'X-RAY DIFFRACTION' ? c_mcbond_it ? 8.200 1.500 ? 'X-RAY DIFFRACTION' ? c_mcangle_it ? 3.420 2.000 ? 'X-RAY DIFFRACTION' ? c_scbond_it ? ? 2.000 ? 'X-RAY DIFFRACTION' ? c_scangle_it ? ? 2.500 ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.d_res_high 1.500 _refine_ls_shell.d_res_low 1.590 _refine_ls_shell.pdbx_total_number_of_bins_used 6 _refine_ls_shell.percent_reflns_obs 93.700 _refine_ls_shell.number_reflns_R_work 2621 _refine_ls_shell.R_factor_all ? _refine_ls_shell.R_factor_R_work 0.33 _refine_ls_shell.R_factor_R_free 0.356 _refine_ls_shell.percent_reflns_R_free 5.800 _refine_ls_shell.number_reflns_R_free 162 _refine_ls_shell.R_factor_R_free_error 0.028 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.number_reflns_obs 2783 _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # loop_ _pdbx_xplor_file.serial_no _pdbx_xplor_file.param_file _pdbx_xplor_file.topol_file _pdbx_xplor_file.pdbx_refine_id 1 protein.param protein.top 'X-RAY DIFFRACTION' 2 dna-rna-allatom.param dna-rna-allatom.top 'X-RAY DIFFRACTION' 3 water.param water.top 'X-RAY DIFFRACTION' 4 ion.param ion.top 'X-RAY DIFFRACTION' # _struct.entry_id 2O4F _struct.title 'Structure of a parallel-stranded guanine tetraplex crystallised with monovalent ions' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2O4F _struct_keywords.pdbx_keywords DNA _struct_keywords.text 'DNA, QUADRUPLE HELIX, PARALLEL-STRANDED' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 1 ? D N N 1 ? E N N 1 ? F N N 1 ? G N N 1 ? H N N 1 ? I N N 2 ? J N N 2 ? K N N 2 ? L N N 2 ? M N N 3 ? N N N 2 ? O N N 2 ? P N N 2 ? Q N N 4 ? R N N 4 ? S N N 4 ? T N N 4 ? U N N 4 ? V N N 4 ? W N N 4 ? X N N 4 ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role metalc1 metalc ? ? A DG 4 O6 ? ? ? 1_555 I NA . NA ? ? A DG 4 A NA 7 1_555 ? ? ? ? ? ? ? 2.563 ? ? metalc2 metalc ? ? A DG 5 O6 ? ? ? 1_555 L NA . NA ? ? A DG 5 A NA 10 1_555 ? ? ? ? ? ? ? 2.242 ? ? metalc3 metalc ? ? I NA . NA ? ? ? 1_555 C DG 4 O6 ? ? A NA 7 C DG 24 1_555 ? ? ? ? ? ? ? 2.594 ? ? metalc4 metalc ? ? I NA . NA ? ? ? 1_555 D DG 4 O6 ? ? A NA 7 D DG 34 1_555 ? ? ? ? ? ? ? 2.588 ? ? metalc5 metalc ? ? L NA . NA ? ? ? 1_555 Q HOH . O ? ? A NA 10 A HOH 20 1_555 ? ? ? ? ? ? ? 2.416 ? ? metalc6 metalc ? ? L NA . NA ? ? ? 1_555 B DG 5 O6 ? ? A NA 10 B DG 15 1_555 ? ? ? ? ? ? ? 2.247 ? ? metalc7 metalc ? ? L NA . NA ? ? ? 1_555 C DG 5 O6 ? ? A NA 10 C DG 25 1_555 ? ? ? ? ? ? ? 2.319 ? ? metalc8 metalc ? ? L NA . NA ? ? ? 1_555 D DG 5 O6 ? ? A NA 10 D DG 35 1_555 ? ? ? ? ? ? ? 2.292 ? ? metalc9 metalc ? ? R HOH . O ? ? ? 1_555 M LI . LI ? ? B HOH 23 C LI 8 1_555 ? ? ? ? ? ? ? 1.886 ? ? metalc10 metalc ? ? R HOH . O ? ? ? 1_555 M LI . LI ? ? B HOH 63 C LI 8 1_555 ? ? ? ? ? ? ? 1.986 ? ? metalc11 metalc ? ? M LI . LI ? ? ? 1_555 C DG 4 "O4'" ? ? C LI 8 C DG 24 1_555 ? ? ? ? ? ? ? 1.911 ? ? metalc12 metalc ? ? M LI . LI ? ? ? 1_555 S HOH . O ? ? C LI 8 C HOH 85 1_555 ? ? ? ? ? ? ? 2.032 ? ? metalc13 metalc ? ? T HOH . O ? ? ? 1_556 P NA . NA ? ? D HOH 38 E NA 6 1_555 ? ? ? ? ? ? ? 2.455 ? ? metalc14 metalc ? ? N NA . NA ? ? ? 1_555 E DG 3 O6 ? ? E NA 3 E DG 43 1_555 ? ? ? ? ? ? ? 2.599 ? ? metalc15 metalc ? ? N NA . NA ? ? ? 1_555 F DG 3 O6 ? ? E NA 3 F DG 53 1_555 ? ? ? ? ? ? ? 2.553 ? ? metalc16 metalc ? ? N NA . NA ? ? ? 1_555 G DG 3 O6 ? ? E NA 3 G DG 63 1_555 ? ? ? ? ? ? ? 2.573 ? ? metalc17 metalc ? ? N NA . NA ? ? ? 1_555 H DG 3 O6 ? ? E NA 3 H DG 73 1_555 ? ? ? ? ? ? ? 2.587 ? ? metalc18 metalc ? ? O NA . NA ? ? ? 1_555 E DG 4 O6 ? ? E NA 4 E DG 44 1_555 ? ? ? ? ? ? ? 2.436 ? ? metalc19 metalc ? ? O NA . NA ? ? ? 1_555 F DG 4 O6 ? ? E NA 4 F DG 54 1_555 ? ? ? ? ? ? ? 2.512 ? ? metalc20 metalc ? ? O NA . NA ? ? ? 1_555 H DG 4 O6 ? ? E NA 4 H DG 74 1_555 ? ? ? ? ? ? ? 2.570 ? ? metalc21 metalc ? ? P NA . NA ? ? ? 1_555 E DG 5 O6 ? ? E NA 6 E DG 45 1_555 ? ? ? ? ? ? ? 2.283 ? ? metalc22 metalc ? ? P NA . NA ? ? ? 1_555 F DG 5 O6 ? ? E NA 6 F DG 55 1_555 ? ? ? ? ? ? ? 2.231 ? ? metalc23 metalc ? ? P NA . NA ? ? ? 1_555 G DG 5 O6 ? ? E NA 6 G DG 65 1_555 ? ? ? ? ? ? ? 2.301 ? ? metalc24 metalc ? ? P NA . NA ? ? ? 1_555 H DG 5 O6 ? ? E NA 6 H DG 75 1_555 ? ? ? ? ? ? ? 2.225 ? ? hydrog1 hydrog ? ? A DT 1 O2 ? ? ? 1_555 H DG 2 N2 ? ? A DT 1 H DG 72 1_555 ? ? ? ? ? ? 'DT-DG MISPAIR' ? ? ? hydrog2 hydrog ? ? A DG 2 N7 ? ? ? 1_555 B DG 2 N2 ? ? A DG 2 B DG 12 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog3 hydrog ? ? A DG 2 O6 ? ? ? 1_555 B DG 2 N1 ? ? A DG 2 B DG 12 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog4 hydrog ? ? A DG 2 N1 ? ? ? 1_555 D DG 2 O6 ? ? A DG 2 D DG 32 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog5 hydrog ? ? A DG 2 N2 ? ? ? 1_555 D DG 2 N7 ? ? A DG 2 D DG 32 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog6 hydrog ? ? A DG 3 N7 ? ? ? 1_555 B DG 3 N2 ? ? A DG 3 B DG 13 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog7 hydrog ? ? A DG 3 O6 ? ? ? 1_555 B DG 3 N1 ? ? A DG 3 B DG 13 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog8 hydrog ? ? A DG 3 N1 ? ? ? 1_555 D DG 3 O6 ? ? A DG 3 D DG 33 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog9 hydrog ? ? A DG 3 N2 ? ? ? 1_555 D DG 3 N7 ? ? A DG 3 D DG 33 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog10 hydrog ? ? A DG 4 N7 ? ? ? 1_555 B DG 4 N2 ? ? A DG 4 B DG 14 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog11 hydrog ? ? A DG 4 O6 ? ? ? 1_555 B DG 4 N1 ? ? A DG 4 B DG 14 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog12 hydrog ? ? A DG 4 N1 ? ? ? 1_555 D DG 4 O6 ? ? A DG 4 D DG 34 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog13 hydrog ? ? A DG 4 N2 ? ? ? 1_555 D DG 4 N7 ? ? A DG 4 D DG 34 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog14 hydrog ? ? A DG 5 N7 ? ? ? 1_555 B DG 5 N2 ? ? A DG 5 B DG 15 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog15 hydrog ? ? A DG 5 O6 ? ? ? 1_555 B DG 5 N1 ? ? A DG 5 B DG 15 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog16 hydrog ? ? A DG 5 N1 ? ? ? 1_555 D DG 5 O6 ? ? A DG 5 D DG 35 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog17 hydrog ? ? A DG 5 N2 ? ? ? 1_555 D DG 5 N7 ? ? A DG 5 D DG 35 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog18 hydrog ? ? B DT 1 O2 ? ? ? 1_555 G DG 2 N2 ? ? B DT 11 G DG 62 1_555 ? ? ? ? ? ? 'DT-DG MISPAIR' ? ? ? hydrog19 hydrog ? ? B DG 2 N7 ? ? ? 1_555 C DG 2 N2 ? ? B DG 12 C DG 22 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog20 hydrog ? ? B DG 2 O6 ? ? ? 1_555 C DG 2 N1 ? ? B DG 12 C DG 22 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog21 hydrog ? ? B DG 3 N7 ? ? ? 1_555 C DG 3 N2 ? ? B DG 13 C DG 23 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog22 hydrog ? ? B DG 3 O6 ? ? ? 1_555 C DG 3 N1 ? ? B DG 13 C DG 23 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog23 hydrog ? ? B DG 4 N7 ? ? ? 1_555 C DG 4 N2 ? ? B DG 14 C DG 24 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog24 hydrog ? ? B DG 4 O6 ? ? ? 1_555 C DG 4 N1 ? ? B DG 14 C DG 24 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog25 hydrog ? ? B DG 5 N7 ? ? ? 1_555 C DG 5 N2 ? ? B DG 15 C DG 25 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog26 hydrog ? ? B DG 5 O6 ? ? ? 1_555 C DG 5 N1 ? ? B DG 15 C DG 25 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog27 hydrog ? ? C DT 1 O2 ? ? ? 1_555 F DG 2 N2 ? ? C DT 21 F DG 52 1_555 ? ? ? ? ? ? 'DT-DG MISPAIR' ? ? ? hydrog28 hydrog ? ? C DG 2 N7 ? ? ? 1_555 D DG 2 N2 ? ? C DG 22 D DG 32 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog29 hydrog ? ? C DG 2 O6 ? ? ? 1_555 D DG 2 N1 ? ? C DG 22 D DG 32 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog30 hydrog ? ? C DG 3 N7 ? ? ? 1_555 D DG 3 N2 ? ? C DG 23 D DG 33 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog31 hydrog ? ? C DG 3 O6 ? ? ? 1_555 D DG 3 N1 ? ? C DG 23 D DG 33 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog32 hydrog ? ? C DG 4 N7 ? ? ? 1_555 D DG 4 N2 ? ? C DG 24 D DG 34 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog33 hydrog ? ? C DG 4 O6 ? ? ? 1_555 D DG 4 N1 ? ? C DG 24 D DG 34 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog34 hydrog ? ? C DG 5 N7 ? ? ? 1_555 D DG 5 N2 ? ? C DG 25 D DG 35 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog35 hydrog ? ? C DG 5 O6 ? ? ? 1_555 D DG 5 N1 ? ? C DG 25 D DG 35 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog36 hydrog ? ? D DT 1 O2 ? ? ? 1_555 E DG 2 N2 ? ? D DT 31 E DG 42 1_555 ? ? ? ? ? ? 'DT-DG MISPAIR' ? ? ? hydrog37 hydrog ? ? E DG 2 N7 ? ? ? 1_555 F DG 2 N2 ? ? E DG 42 F DG 52 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog38 hydrog ? ? E DG 2 O6 ? ? ? 1_555 F DG 2 N1 ? ? E DG 42 F DG 52 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog39 hydrog ? ? E DG 2 N1 ? ? ? 1_555 H DG 2 O6 ? ? E DG 42 H DG 72 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog40 hydrog ? ? E DG 2 N2 ? ? ? 1_555 H DG 2 N7 ? ? E DG 42 H DG 72 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog41 hydrog ? ? E DG 3 N7 ? ? ? 1_555 F DG 3 N2 ? ? E DG 43 F DG 53 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog42 hydrog ? ? E DG 3 O6 ? ? ? 1_555 F DG 3 N1 ? ? E DG 43 F DG 53 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog43 hydrog ? ? E DG 3 N1 ? ? ? 1_555 H DG 3 O6 ? ? E DG 43 H DG 73 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog44 hydrog ? ? E DG 3 N2 ? ? ? 1_555 H DG 3 N7 ? ? E DG 43 H DG 73 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog45 hydrog ? ? E DG 4 N7 ? ? ? 1_555 F DG 4 N2 ? ? E DG 44 F DG 54 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog46 hydrog ? ? E DG 4 O6 ? ? ? 1_555 F DG 4 N1 ? ? E DG 44 F DG 54 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog47 hydrog ? ? E DG 4 N1 ? ? ? 1_555 H DG 4 O6 ? ? E DG 44 H DG 74 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog48 hydrog ? ? E DG 4 N2 ? ? ? 1_555 H DG 4 N7 ? ? E DG 44 H DG 74 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog49 hydrog ? ? E DG 5 N7 ? ? ? 1_555 F DG 5 N2 ? ? E DG 45 F DG 55 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog50 hydrog ? ? E DG 5 O6 ? ? ? 1_555 F DG 5 N1 ? ? E DG 45 F DG 55 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog51 hydrog ? ? E DG 5 N1 ? ? ? 1_555 H DG 5 O6 ? ? E DG 45 H DG 75 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog52 hydrog ? ? E DG 5 N2 ? ? ? 1_555 H DG 5 N7 ? ? E DG 45 H DG 75 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog53 hydrog ? ? E DT 6 O4 ? ? ? 1_555 F DT 6 N3 ? ? E DT 46 F DT 56 1_555 ? ? ? ? ? ? 'DT-DT MISPAIR' ? ? ? hydrog54 hydrog ? ? F DG 2 N7 ? ? ? 1_555 G DG 2 N2 ? ? F DG 52 G DG 62 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog55 hydrog ? ? F DG 2 O6 ? ? ? 1_555 G DG 2 N1 ? ? F DG 52 G DG 62 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog56 hydrog ? ? F DG 3 N7 ? ? ? 1_555 G DG 3 N2 ? ? F DG 53 G DG 63 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog57 hydrog ? ? F DG 3 O6 ? ? ? 1_555 G DG 3 N1 ? ? F DG 53 G DG 63 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog58 hydrog ? ? F DG 4 N7 ? ? ? 1_555 G DG 4 N2 ? ? F DG 54 G DG 64 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog59 hydrog ? ? F DG 4 O6 ? ? ? 1_555 G DG 4 N1 ? ? F DG 54 G DG 64 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog60 hydrog ? ? F DG 5 N7 ? ? ? 1_555 G DG 5 N2 ? ? F DG 55 G DG 65 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog61 hydrog ? ? F DG 5 O6 ? ? ? 1_555 G DG 5 N1 ? ? F DG 55 G DG 65 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog62 hydrog ? ? G DG 2 N7 ? ? ? 1_555 H DG 2 N2 ? ? G DG 62 H DG 72 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog63 hydrog ? ? G DG 2 O6 ? ? ? 1_555 H DG 2 N1 ? ? G DG 62 H DG 72 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog64 hydrog ? ? G DG 3 N7 ? ? ? 1_555 H DG 3 N2 ? ? G DG 63 H DG 73 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog65 hydrog ? ? G DG 3 O6 ? ? ? 1_555 H DG 3 N1 ? ? G DG 63 H DG 73 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog66 hydrog ? ? G DG 4 N7 ? ? ? 1_555 H DG 4 N2 ? ? G DG 64 H DG 74 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog67 hydrog ? ? G DG 4 O6 ? ? ? 1_555 H DG 4 N1 ? ? G DG 64 H DG 74 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog68 hydrog ? ? G DG 5 N7 ? ? ? 1_555 H DG 5 N2 ? ? G DG 65 H DG 75 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog69 hydrog ? ? G DG 5 O6 ? ? ? 1_555 H DG 5 N1 ? ? G DG 65 H DG 75 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference metalc ? ? hydrog ? ? # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A NA 7 ? 9 'BINDING SITE FOR RESIDUE NA A 7' AC2 Software A NA 8 ? 10 'BINDING SITE FOR RESIDUE NA A 8' AC3 Software E NA 3 ? 10 'BINDING SITE FOR RESIDUE NA E 3' AC4 Software E NA 4 ? 9 'BINDING SITE FOR RESIDUE NA E 4' AC5 Software A NA 9 ? 10 'BINDING SITE FOR RESIDUE NA A 9' AC6 Software E NA 6 ? 5 'BINDING SITE FOR RESIDUE NA E 6' AC7 Software A NA 10 ? 5 'BINDING SITE FOR RESIDUE NA A 10' AC8 Software C LI 8 ? 5 'BINDING SITE FOR RESIDUE LI C 8' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 9 DG A 3 ? DG A 3 . ? 1_555 ? 2 AC1 9 DG A 4 ? DG A 4 . ? 1_555 ? 3 AC1 9 NA J . ? NA A 8 . ? 1_555 ? 4 AC1 9 DG B 3 ? DG B 13 . ? 1_555 ? 5 AC1 9 DG B 4 ? DG B 14 . ? 1_555 ? 6 AC1 9 DG C 3 ? DG C 23 . ? 1_555 ? 7 AC1 9 DG C 4 ? DG C 24 . ? 1_555 ? 8 AC1 9 DG D 3 ? DG D 33 . ? 1_555 ? 9 AC1 9 DG D 4 ? DG D 34 . ? 1_555 ? 10 AC2 10 DG A 2 ? DG A 2 . ? 1_555 ? 11 AC2 10 DG A 3 ? DG A 3 . ? 1_555 ? 12 AC2 10 NA I . ? NA A 7 . ? 1_555 ? 13 AC2 10 NA K . ? NA A 9 . ? 1_555 ? 14 AC2 10 DG B 2 ? DG B 12 . ? 1_555 ? 15 AC2 10 DG B 3 ? DG B 13 . ? 1_555 ? 16 AC2 10 DG C 2 ? DG C 22 . ? 1_555 ? 17 AC2 10 DG C 3 ? DG C 23 . ? 1_555 ? 18 AC2 10 DG D 2 ? DG D 32 . ? 1_555 ? 19 AC2 10 DG D 3 ? DG D 33 . ? 1_555 ? 20 AC3 10 NA K . ? NA A 9 . ? 1_555 ? 21 AC3 10 NA O . ? NA E 4 . ? 1_555 ? 22 AC3 10 DG E 2 ? DG E 42 . ? 1_555 ? 23 AC3 10 DG E 3 ? DG E 43 . ? 1_555 ? 24 AC3 10 DG F 2 ? DG F 52 . ? 1_555 ? 25 AC3 10 DG F 3 ? DG F 53 . ? 1_555 ? 26 AC3 10 DG G 2 ? DG G 62 . ? 1_555 ? 27 AC3 10 DG G 3 ? DG G 63 . ? 1_555 ? 28 AC3 10 DG H 2 ? DG H 72 . ? 1_555 ? 29 AC3 10 DG H 3 ? DG H 73 . ? 1_555 ? 30 AC4 9 NA N . ? NA E 3 . ? 1_555 ? 31 AC4 9 DG E 3 ? DG E 43 . ? 1_555 ? 32 AC4 9 DG E 4 ? DG E 44 . ? 1_555 ? 33 AC4 9 DG F 3 ? DG F 53 . ? 1_555 ? 34 AC4 9 DG F 4 ? DG F 54 . ? 1_555 ? 35 AC4 9 DG G 3 ? DG G 63 . ? 1_555 ? 36 AC4 9 DG G 4 ? DG G 64 . ? 1_555 ? 37 AC4 9 DG H 3 ? DG H 73 . ? 1_555 ? 38 AC4 9 DG H 4 ? DG H 74 . ? 1_555 ? 39 AC5 10 DG A 2 ? DG A 2 . ? 1_555 ? 40 AC5 10 NA J . ? NA A 8 . ? 1_555 ? 41 AC5 10 DG B 2 ? DG B 12 . ? 1_555 ? 42 AC5 10 DG C 2 ? DG C 22 . ? 1_555 ? 43 AC5 10 DG D 2 ? DG D 32 . ? 1_555 ? 44 AC5 10 NA N . ? NA E 3 . ? 1_555 ? 45 AC5 10 DG E 2 ? DG E 42 . ? 1_555 ? 46 AC5 10 DG F 2 ? DG F 52 . ? 1_555 ? 47 AC5 10 DG G 2 ? DG G 62 . ? 1_555 ? 48 AC5 10 DG H 2 ? DG H 72 . ? 1_555 ? 49 AC6 5 HOH T . ? HOH D 38 . ? 1_556 ? 50 AC6 5 DG E 5 ? DG E 45 . ? 1_555 ? 51 AC6 5 DG F 5 ? DG F 55 . ? 1_555 ? 52 AC6 5 DG G 5 ? DG G 65 . ? 1_555 ? 53 AC6 5 DG H 5 ? DG H 75 . ? 1_555 ? 54 AC7 5 DG A 5 ? DG A 5 . ? 1_555 ? 55 AC7 5 HOH Q . ? HOH A 20 . ? 1_555 ? 56 AC7 5 DG B 5 ? DG B 15 . ? 1_555 ? 57 AC7 5 DG C 5 ? DG C 25 . ? 1_555 ? 58 AC7 5 DG D 5 ? DG D 35 . ? 1_555 ? 59 AC8 5 HOH R . ? HOH B 23 . ? 1_555 ? 60 AC8 5 HOH R . ? HOH B 63 . ? 1_555 ? 61 AC8 5 DG C 3 ? DG C 23 . ? 1_555 ? 62 AC8 5 DG C 4 ? DG C 24 . ? 1_555 ? 63 AC8 5 HOH S . ? HOH C 85 . ? 1_555 ? # _database_PDB_matrix.entry_id 2O4F _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.000000 _database_PDB_matrix.origx_vector[2] 0.000000 _database_PDB_matrix.origx_vector[3] 0.000000 # _atom_sites.entry_id 2O4F _atom_sites.fract_transf_matrix[1][1] 0.034578 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.011235 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.017431 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.029272 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C LI N NA O P # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DT 1 1 1 DT T A . n A 1 2 DG 2 2 2 DG G A . n A 1 3 DG 3 3 3 DG G A . n A 1 4 DG 4 4 4 DG G A . n A 1 5 DG 5 5 5 DG G A . n A 1 6 DT 6 6 6 DT T A . n B 1 1 DT 1 11 11 DT T B . n B 1 2 DG 2 12 12 DG G B . n B 1 3 DG 3 13 13 DG G B . n B 1 4 DG 4 14 14 DG G B . n B 1 5 DG 5 15 15 DG G B . n B 1 6 DT 6 16 16 DT T B . n C 1 1 DT 1 21 21 DT T C . n C 1 2 DG 2 22 22 DG G C . n C 1 3 DG 3 23 23 DG G C . n C 1 4 DG 4 24 24 DG G C . n C 1 5 DG 5 25 25 DG G C . n C 1 6 DT 6 26 26 DT T C . n D 1 1 DT 1 31 31 DT T D . n D 1 2 DG 2 32 32 DG G D . n D 1 3 DG 3 33 33 DG G D . n D 1 4 DG 4 34 34 DG G D . n D 1 5 DG 5 35 35 DG G D . n D 1 6 DT 6 36 36 DT T D . n E 1 1 DT 1 41 41 DT T E . n E 1 2 DG 2 42 42 DG G E . n E 1 3 DG 3 43 43 DG G E . n E 1 4 DG 4 44 44 DG G E . n E 1 5 DG 5 45 45 DG G E . n E 1 6 DT 6 46 46 DT T E . n F 1 1 DT 1 51 51 DT T F . n F 1 2 DG 2 52 52 DG G F . n F 1 3 DG 3 53 53 DG G F . n F 1 4 DG 4 54 54 DG G F . n F 1 5 DG 5 55 55 DG G F . n F 1 6 DT 6 56 56 DT T F . n G 1 1 DT 1 61 61 DT T G . n G 1 2 DG 2 62 62 DG G G . n G 1 3 DG 3 63 63 DG G G . n G 1 4 DG 4 64 64 DG G G . n G 1 5 DG 5 65 65 DG G G . n G 1 6 DT 6 66 66 DT T G . n H 1 1 DT 1 71 71 DT T H . n H 1 2 DG 2 72 72 DG G H . n H 1 3 DG 3 73 73 DG G H . n H 1 4 DG 4 74 74 DG G H . n H 1 5 DG 5 75 75 DG G H . n H 1 6 DT 6 76 76 DT T H . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code I 2 NA 1 7 1 NA NA A . J 2 NA 1 8 2 NA NA A . K 2 NA 1 9 5 NA NA A . L 2 NA 1 10 7 NA NA A . M 3 LI 1 8 8 LI LI C . N 2 NA 1 3 3 NA NA E . O 2 NA 1 4 4 NA NA E . P 2 NA 1 6 6 NA NA E . Q 4 HOH 1 11 9 HOH HOH A . Q 4 HOH 2 12 10 HOH HOH A . Q 4 HOH 3 13 11 HOH HOH A . Q 4 HOH 4 14 15 HOH HOH A . Q 4 HOH 5 15 17 HOH HOH A . Q 4 HOH 6 16 20 HOH HOH A . Q 4 HOH 7 17 21 HOH HOH A . Q 4 HOH 8 18 31 HOH HOH A . Q 4 HOH 9 19 32 HOH HOH A . Q 4 HOH 10 20 40 HOH HOH A . Q 4 HOH 11 21 41 HOH HOH A . Q 4 HOH 12 22 56 HOH HOH A . Q 4 HOH 13 23 58 HOH HOH A . Q 4 HOH 14 24 60 HOH HOH A . Q 4 HOH 15 25 67 HOH HOH A . Q 4 HOH 16 26 103 HOH HOH A . Q 4 HOH 17 27 104 HOH HOH A . Q 4 HOH 18 28 123 HOH HOH A . Q 4 HOH 19 29 124 HOH HOH A . Q 4 HOH 20 30 125 HOH HOH A . Q 4 HOH 21 31 130 HOH HOH A . Q 4 HOH 22 32 134 HOH HOH A . Q 4 HOH 23 33 135 HOH HOH A . Q 4 HOH 24 34 149 HOH HOH A . Q 4 HOH 25 35 150 HOH HOH A . Q 4 HOH 26 36 156 HOH HOH A . Q 4 HOH 27 37 158 HOH HOH A . Q 4 HOH 28 38 159 HOH HOH A . Q 4 HOH 29 39 160 HOH HOH A . Q 4 HOH 30 40 166 HOH HOH A . Q 4 HOH 31 41 170 HOH HOH A . Q 4 HOH 32 42 189 HOH HOH A . Q 4 HOH 33 43 190 HOH HOH A . Q 4 HOH 34 44 195 HOH HOH A . Q 4 HOH 35 45 196 HOH HOH A . Q 4 HOH 36 46 201 HOH HOH A . Q 4 HOH 37 47 228 HOH HOH A . R 4 HOH 1 23 23 HOH HOH B . R 4 HOH 2 26 26 HOH HOH B . R 4 HOH 3 29 29 HOH HOH B . R 4 HOH 4 36 36 HOH HOH B . R 4 HOH 5 47 47 HOH HOH B . R 4 HOH 6 49 49 HOH HOH B . R 4 HOH 7 61 61 HOH HOH B . R 4 HOH 8 63 63 HOH HOH B . R 4 HOH 9 64 64 HOH HOH B . R 4 HOH 10 66 66 HOH HOH B . R 4 HOH 11 68 68 HOH HOH B . R 4 HOH 12 78 78 HOH HOH B . R 4 HOH 13 79 79 HOH HOH B . R 4 HOH 14 86 86 HOH HOH B . R 4 HOH 15 87 87 HOH HOH B . R 4 HOH 16 88 88 HOH HOH B . R 4 HOH 17 105 105 HOH HOH B . R 4 HOH 18 106 106 HOH HOH B . R 4 HOH 19 108 108 HOH HOH B . R 4 HOH 20 132 132 HOH HOH B . R 4 HOH 21 146 146 HOH HOH B . R 4 HOH 22 152 152 HOH HOH B . R 4 HOH 23 155 155 HOH HOH B . R 4 HOH 24 164 164 HOH HOH B . R 4 HOH 25 165 165 HOH HOH B . R 4 HOH 26 167 167 HOH HOH B . R 4 HOH 27 168 168 HOH HOH B . R 4 HOH 28 169 169 HOH HOH B . R 4 HOH 29 171 171 HOH HOH B . R 4 HOH 30 204 204 HOH HOH B . R 4 HOH 31 211 211 HOH HOH B . R 4 HOH 32 221 221 HOH HOH B . R 4 HOH 33 224 224 HOH HOH B . S 4 HOH 1 18 18 HOH HOH C . S 4 HOH 2 39 39 HOH HOH C . S 4 HOH 3 43 43 HOH HOH C . S 4 HOH 4 53 53 HOH HOH C . S 4 HOH 5 59 59 HOH HOH C . S 4 HOH 6 70 70 HOH HOH C . S 4 HOH 7 71 71 HOH HOH C . S 4 HOH 8 72 72 HOH HOH C . S 4 HOH 9 73 73 HOH HOH C . S 4 HOH 10 85 85 HOH HOH C . S 4 HOH 11 95 95 HOH HOH C . S 4 HOH 12 100 100 HOH HOH C . S 4 HOH 13 107 107 HOH HOH C . S 4 HOH 14 131 131 HOH HOH C . S 4 HOH 15 133 133 HOH HOH C . S 4 HOH 16 141 141 HOH HOH C . S 4 HOH 17 145 145 HOH HOH C . S 4 HOH 18 147 147 HOH HOH C . S 4 HOH 19 172 172 HOH HOH C . S 4 HOH 20 175 175 HOH HOH C . S 4 HOH 21 176 176 HOH HOH C . S 4 HOH 22 178 178 HOH HOH C . S 4 HOH 23 202 202 HOH HOH C . S 4 HOH 24 212 212 HOH HOH C . S 4 HOH 25 213 213 HOH HOH C . S 4 HOH 26 230 230 HOH HOH C . T 4 HOH 1 37 25 HOH HOH D . T 4 HOH 2 38 35 HOH HOH D . T 4 HOH 3 39 46 HOH HOH D . T 4 HOH 4 40 62 HOH HOH D . T 4 HOH 5 41 69 HOH HOH D . T 4 HOH 6 42 89 HOH HOH D . T 4 HOH 7 43 90 HOH HOH D . T 4 HOH 8 44 92 HOH HOH D . T 4 HOH 9 45 113 HOH HOH D . T 4 HOH 10 46 115 HOH HOH D . T 4 HOH 11 47 116 HOH HOH D . T 4 HOH 12 48 117 HOH HOH D . T 4 HOH 13 49 136 HOH HOH D . T 4 HOH 14 50 151 HOH HOH D . T 4 HOH 15 51 154 HOH HOH D . T 4 HOH 16 52 157 HOH HOH D . T 4 HOH 17 53 177 HOH HOH D . T 4 HOH 18 54 179 HOH HOH D . T 4 HOH 19 55 180 HOH HOH D . T 4 HOH 20 56 181 HOH HOH D . T 4 HOH 21 57 182 HOH HOH D . T 4 HOH 22 58 192 HOH HOH D . T 4 HOH 23 59 206 HOH HOH D . T 4 HOH 24 60 207 HOH HOH D . T 4 HOH 25 61 208 HOH HOH D . T 4 HOH 26 62 215 HOH HOH D . T 4 HOH 27 63 217 HOH HOH D . T 4 HOH 28 64 222 HOH HOH D . T 4 HOH 29 65 223 HOH HOH D . T 4 HOH 30 66 227 HOH HOH D . U 4 HOH 1 13 13 HOH HOH E . U 4 HOH 2 16 16 HOH HOH E . U 4 HOH 3 24 24 HOH HOH E . U 4 HOH 4 34 34 HOH HOH E . U 4 HOH 5 54 54 HOH HOH E . U 4 HOH 6 74 74 HOH HOH E . U 4 HOH 7 75 75 HOH HOH E . U 4 HOH 8 76 76 HOH HOH E . U 4 HOH 9 80 80 HOH HOH E . U 4 HOH 10 81 81 HOH HOH E . U 4 HOH 11 91 91 HOH HOH E . U 4 HOH 12 97 97 HOH HOH E . U 4 HOH 13 114 114 HOH HOH E . U 4 HOH 14 120 120 HOH HOH E . U 4 HOH 15 142 142 HOH HOH E . U 4 HOH 16 143 143 HOH HOH E . U 4 HOH 17 193 193 HOH HOH E . U 4 HOH 18 194 194 HOH HOH E . U 4 HOH 19 198 198 HOH HOH E . U 4 HOH 20 205 205 HOH HOH E . U 4 HOH 21 209 209 HOH HOH E . U 4 HOH 22 216 216 HOH HOH E . U 4 HOH 23 235 235 HOH HOH E . V 4 HOH 1 57 19 HOH HOH F . V 4 HOH 2 58 27 HOH HOH F . V 4 HOH 3 59 37 HOH HOH F . V 4 HOH 4 60 38 HOH HOH F . V 4 HOH 5 61 50 HOH HOH F . V 4 HOH 6 62 55 HOH HOH F . V 4 HOH 7 63 77 HOH HOH F . V 4 HOH 8 64 82 HOH HOH F . V 4 HOH 9 65 109 HOH HOH F . V 4 HOH 10 66 110 HOH HOH F . V 4 HOH 11 67 111 HOH HOH F . V 4 HOH 12 68 118 HOH HOH F . V 4 HOH 13 69 122 HOH HOH F . V 4 HOH 14 70 139 HOH HOH F . V 4 HOH 15 71 144 HOH HOH F . V 4 HOH 16 72 153 HOH HOH F . V 4 HOH 17 73 162 HOH HOH F . V 4 HOH 18 74 173 HOH HOH F . V 4 HOH 19 75 174 HOH HOH F . V 4 HOH 20 76 191 HOH HOH F . V 4 HOH 21 77 197 HOH HOH F . V 4 HOH 22 78 203 HOH HOH F . V 4 HOH 23 79 210 HOH HOH F . V 4 HOH 24 80 225 HOH HOH F . V 4 HOH 25 81 226 HOH HOH F . V 4 HOH 26 82 229 HOH HOH F . W 4 HOH 1 67 22 HOH HOH G . W 4 HOH 2 68 28 HOH HOH G . W 4 HOH 3 69 30 HOH HOH G . W 4 HOH 4 70 51 HOH HOH G . W 4 HOH 5 71 52 HOH HOH G . W 4 HOH 6 72 57 HOH HOH G . W 4 HOH 7 73 65 HOH HOH G . W 4 HOH 8 74 83 HOH HOH G . W 4 HOH 9 75 93 HOH HOH G . W 4 HOH 10 76 98 HOH HOH G . W 4 HOH 11 77 101 HOH HOH G . W 4 HOH 12 78 126 HOH HOH G . W 4 HOH 13 79 127 HOH HOH G . W 4 HOH 14 80 129 HOH HOH G . W 4 HOH 15 81 137 HOH HOH G . W 4 HOH 16 82 138 HOH HOH G . W 4 HOH 17 83 140 HOH HOH G . W 4 HOH 18 84 161 HOH HOH G . W 4 HOH 19 85 163 HOH HOH G . W 4 HOH 20 86 187 HOH HOH G . W 4 HOH 21 87 199 HOH HOH G . W 4 HOH 22 88 200 HOH HOH G . W 4 HOH 23 89 218 HOH HOH G . W 4 HOH 24 90 220 HOH HOH G . W 4 HOH 25 91 234 HOH HOH G . X 4 HOH 1 12 12 HOH HOH H . X 4 HOH 2 14 14 HOH HOH H . X 4 HOH 3 33 33 HOH HOH H . X 4 HOH 4 42 42 HOH HOH H . X 4 HOH 5 44 44 HOH HOH H . X 4 HOH 6 45 45 HOH HOH H . X 4 HOH 7 48 48 HOH HOH H . X 4 HOH 8 84 84 HOH HOH H . X 4 HOH 9 94 94 HOH HOH H . X 4 HOH 10 96 96 HOH HOH H . X 4 HOH 11 99 99 HOH HOH H . X 4 HOH 12 102 102 HOH HOH H . X 4 HOH 13 112 112 HOH HOH H . X 4 HOH 14 119 119 HOH HOH H . X 4 HOH 15 121 121 HOH HOH H . X 4 HOH 16 128 128 HOH HOH H . X 4 HOH 17 148 148 HOH HOH H . X 4 HOH 18 183 183 HOH HOH H . X 4 HOH 19 184 184 HOH HOH H . X 4 HOH 20 185 185 HOH HOH H . X 4 HOH 21 186 186 HOH HOH H . X 4 HOH 22 188 188 HOH HOH H . X 4 HOH 23 214 214 HOH HOH H . X 4 HOH 24 219 219 HOH HOH H . X 4 HOH 25 231 231 HOH HOH H . X 4 HOH 26 232 232 HOH HOH H . X 4 HOH 27 233 233 HOH HOH H . X 4 HOH 28 236 236 HOH HOH H . # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 author_defined_assembly ? tetrameric 4 2 author_defined_assembly ? tetrameric 4 # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1 A,B,C,D,I,J,K,L,M,Q,R,S,T 2 1 E,F,G,H,N,O,P,U,V,W,X # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 O6 ? A DG 4 ? A DG 4 ? 1_555 NA ? I NA . ? A NA 7 ? 1_555 O6 ? C DG 4 ? C DG 24 ? 1_555 124.4 ? 2 O6 ? A DG 4 ? A DG 4 ? 1_555 NA ? I NA . ? A NA 7 ? 1_555 O6 ? D DG 4 ? D DG 34 ? 1_555 75.7 ? 3 O6 ? C DG 4 ? C DG 24 ? 1_555 NA ? I NA . ? A NA 7 ? 1_555 O6 ? D DG 4 ? D DG 34 ? 1_555 78.9 ? 4 O6 ? A DG 5 ? A DG 5 ? 1_555 NA ? L NA . ? A NA 10 ? 1_555 O ? Q HOH . ? A HOH 20 ? 1_555 87.3 ? 5 O6 ? A DG 5 ? A DG 5 ? 1_555 NA ? L NA . ? A NA 10 ? 1_555 O6 ? B DG 5 ? B DG 15 ? 1_555 90.1 ? 6 O ? Q HOH . ? A HOH 20 ? 1_555 NA ? L NA . ? A NA 10 ? 1_555 O6 ? B DG 5 ? B DG 15 ? 1_555 89.0 ? 7 O6 ? A DG 5 ? A DG 5 ? 1_555 NA ? L NA . ? A NA 10 ? 1_555 O6 ? C DG 5 ? C DG 25 ? 1_555 177.5 ? 8 O ? Q HOH . ? A HOH 20 ? 1_555 NA ? L NA . ? A NA 10 ? 1_555 O6 ? C DG 5 ? C DG 25 ? 1_555 94.3 ? 9 O6 ? B DG 5 ? B DG 15 ? 1_555 NA ? L NA . ? A NA 10 ? 1_555 O6 ? C DG 5 ? C DG 25 ? 1_555 91.8 ? 10 O6 ? A DG 5 ? A DG 5 ? 1_555 NA ? L NA . ? A NA 10 ? 1_555 O6 ? D DG 5 ? D DG 35 ? 1_555 87.9 ? 11 O ? Q HOH . ? A HOH 20 ? 1_555 NA ? L NA . ? A NA 10 ? 1_555 O6 ? D DG 5 ? D DG 35 ? 1_555 90.3 ? 12 O6 ? B DG 5 ? B DG 15 ? 1_555 NA ? L NA . ? A NA 10 ? 1_555 O6 ? D DG 5 ? D DG 35 ? 1_555 177.9 ? 13 O6 ? C DG 5 ? C DG 25 ? 1_555 NA ? L NA . ? A NA 10 ? 1_555 O6 ? D DG 5 ? D DG 35 ? 1_555 90.2 ? 14 O ? R HOH . ? B HOH 23 ? 1_555 LI ? M LI . ? C LI 8 ? 1_555 O ? R HOH . ? B HOH 63 ? 1_555 120.6 ? 15 O ? R HOH . ? B HOH 23 ? 1_555 LI ? M LI . ? C LI 8 ? 1_555 "O4'" ? C DG 4 ? C DG 24 ? 1_555 108.6 ? 16 O ? R HOH . ? B HOH 63 ? 1_555 LI ? M LI . ? C LI 8 ? 1_555 "O4'" ? C DG 4 ? C DG 24 ? 1_555 112.2 ? 17 O ? R HOH . ? B HOH 23 ? 1_555 LI ? M LI . ? C LI 8 ? 1_555 O ? S HOH . ? C HOH 85 ? 1_555 95.1 ? 18 O ? R HOH . ? B HOH 63 ? 1_555 LI ? M LI . ? C LI 8 ? 1_555 O ? S HOH . ? C HOH 85 ? 1_555 114.1 ? 19 "O4'" ? C DG 4 ? C DG 24 ? 1_555 LI ? M LI . ? C LI 8 ? 1_555 O ? S HOH . ? C HOH 85 ? 1_555 103.8 ? 20 O ? T HOH . ? D HOH 38 ? 1_556 NA ? P NA . ? E NA 6 ? 1_555 O6 ? E DG 5 ? E DG 45 ? 1_555 86.6 ? 21 O ? T HOH . ? D HOH 38 ? 1_556 NA ? P NA . ? E NA 6 ? 1_555 O6 ? F DG 5 ? F DG 55 ? 1_555 89.2 ? 22 O6 ? E DG 5 ? E DG 45 ? 1_555 NA ? P NA . ? E NA 6 ? 1_555 O6 ? F DG 5 ? F DG 55 ? 1_555 89.6 ? 23 O ? T HOH . ? D HOH 38 ? 1_556 NA ? P NA . ? E NA 6 ? 1_555 O6 ? G DG 5 ? G DG 65 ? 1_555 90.1 ? 24 O6 ? E DG 5 ? E DG 45 ? 1_555 NA ? P NA . ? E NA 6 ? 1_555 O6 ? G DG 5 ? G DG 65 ? 1_555 175.2 ? 25 O6 ? F DG 5 ? F DG 55 ? 1_555 NA ? P NA . ? E NA 6 ? 1_555 O6 ? G DG 5 ? G DG 65 ? 1_555 93.9 ? 26 O ? T HOH . ? D HOH 38 ? 1_556 NA ? P NA . ? E NA 6 ? 1_555 O6 ? H DG 5 ? H DG 75 ? 1_555 87.0 ? 27 O6 ? E DG 5 ? E DG 45 ? 1_555 NA ? P NA . ? E NA 6 ? 1_555 O6 ? H DG 5 ? H DG 75 ? 1_555 89.7 ? 28 O6 ? F DG 5 ? F DG 55 ? 1_555 NA ? P NA . ? E NA 6 ? 1_555 O6 ? H DG 5 ? H DG 75 ? 1_555 176.2 ? 29 O6 ? G DG 5 ? G DG 65 ? 1_555 NA ? P NA . ? E NA 6 ? 1_555 O6 ? H DG 5 ? H DG 75 ? 1_555 86.6 ? 30 O6 ? E DG 3 ? E DG 43 ? 1_555 NA ? N NA . ? E NA 3 ? 1_555 O6 ? F DG 3 ? F DG 53 ? 1_555 73.7 ? 31 O6 ? E DG 3 ? E DG 43 ? 1_555 NA ? N NA . ? E NA 3 ? 1_555 O6 ? G DG 3 ? G DG 63 ? 1_555 115.3 ? 32 O6 ? F DG 3 ? F DG 53 ? 1_555 NA ? N NA . ? E NA 3 ? 1_555 O6 ? G DG 3 ? G DG 63 ? 1_555 73.4 ? 33 O6 ? E DG 3 ? E DG 43 ? 1_555 NA ? N NA . ? E NA 3 ? 1_555 O6 ? H DG 3 ? H DG 73 ? 1_555 73.1 ? 34 O6 ? F DG 3 ? F DG 53 ? 1_555 NA ? N NA . ? E NA 3 ? 1_555 O6 ? H DG 3 ? H DG 73 ? 1_555 115.8 ? 35 O6 ? G DG 3 ? G DG 63 ? 1_555 NA ? N NA . ? E NA 3 ? 1_555 O6 ? H DG 3 ? H DG 73 ? 1_555 73.7 ? 36 O6 ? E DG 4 ? E DG 44 ? 1_555 NA ? O NA . ? E NA 4 ? 1_555 O6 ? F DG 4 ? F DG 54 ? 1_555 78.4 ? 37 O6 ? E DG 4 ? E DG 44 ? 1_555 NA ? O NA . ? E NA 4 ? 1_555 O6 ? H DG 4 ? H DG 74 ? 1_555 81.0 ? 38 O6 ? F DG 4 ? F DG 54 ? 1_555 NA ? O NA . ? E NA 4 ? 1_555 O6 ? H DG 4 ? H DG 74 ? 1_555 120.8 ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2007-05-22 2 'Structure model' 1 1 2007-10-30 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2023-08-30 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Database references' 5 4 'Structure model' 'Derived calculations' 6 4 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' chem_comp_atom 2 4 'Structure model' chem_comp_bond 3 4 'Structure model' database_2 4 4 'Structure model' pdbx_initial_refinement_model 5 4 'Structure model' pdbx_struct_conn_angle 6 4 'Structure model' struct_conn 7 4 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_asym_id' 4 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_comp_id' 5 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_seq_id' 6 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_asym_id' 7 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_atom_id' 8 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_comp_id' 9 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_seq_id' 10 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_symmetry' 11 4 'Structure model' '_pdbx_struct_conn_angle.ptnr2_auth_seq_id' 12 4 'Structure model' '_pdbx_struct_conn_angle.ptnr2_label_asym_id' 13 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_asym_id' 14 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_comp_id' 15 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id' 16 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_asym_id' 17 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_atom_id' 18 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_comp_id' 19 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_seq_id' 20 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_symmetry' 21 4 'Structure model' '_pdbx_struct_conn_angle.value' 22 4 'Structure model' '_struct_conn.pdbx_dist_value' 23 4 'Structure model' '_struct_conn.ptnr1_auth_asym_id' 24 4 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 25 4 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 26 4 'Structure model' '_struct_conn.ptnr1_label_asym_id' 27 4 'Structure model' '_struct_conn.ptnr1_label_atom_id' 28 4 'Structure model' '_struct_conn.ptnr1_label_comp_id' 29 4 'Structure model' '_struct_conn.ptnr1_label_seq_id' 30 4 'Structure model' '_struct_conn.ptnr1_symmetry' 31 4 'Structure model' '_struct_conn.ptnr2_auth_asym_id' 32 4 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 33 4 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 34 4 'Structure model' '_struct_conn.ptnr2_label_asym_id' 35 4 'Structure model' '_struct_conn.ptnr2_label_atom_id' 36 4 'Structure model' '_struct_conn.ptnr2_label_comp_id' 37 4 'Structure model' '_struct_conn.ptnr2_label_seq_id' 38 4 'Structure model' '_struct_conn.ptnr2_symmetry' 39 4 'Structure model' '_struct_site.pdbx_auth_asym_id' 40 4 'Structure model' '_struct_site.pdbx_auth_comp_id' 41 4 'Structure model' '_struct_site.pdbx_auth_seq_id' # loop_ _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id _software.pdbx_ordinal CNS 1.1 ? package 'Axel T. Brunger' axel.brunger@yale.edu refinement http://cns.csb.yale.edu/v1.1/ Fortran_77 ? 1 PDB_EXTRACT 2.000 'April. 3, 2006' package PDB sw-help@rcsb.rutgers.edu 'data extraction' http://pdb.rutgers.edu/software/ C++ ? 2 ProDC . ? ? ? ? 'data collection' ? ? ? 3 XDS . ? ? ? ? 'data reduction' ? ? ? 4 XSCALE . ? ? ? ? 'data scaling' ? ? ? 5 AMoRE . ? ? ? ? phasing ? ? ? 6 # _pdbx_validate_rmsd_bond.id 1 _pdbx_validate_rmsd_bond.PDB_model_num 1 _pdbx_validate_rmsd_bond.auth_atom_id_1 C2 _pdbx_validate_rmsd_bond.auth_asym_id_1 G _pdbx_validate_rmsd_bond.auth_comp_id_1 DG _pdbx_validate_rmsd_bond.auth_seq_id_1 62 _pdbx_validate_rmsd_bond.PDB_ins_code_1 ? _pdbx_validate_rmsd_bond.label_alt_id_1 ? _pdbx_validate_rmsd_bond.auth_atom_id_2 N3 _pdbx_validate_rmsd_bond.auth_asym_id_2 G _pdbx_validate_rmsd_bond.auth_comp_id_2 DG _pdbx_validate_rmsd_bond.auth_seq_id_2 62 _pdbx_validate_rmsd_bond.PDB_ins_code_2 ? _pdbx_validate_rmsd_bond.label_alt_id_2 ? _pdbx_validate_rmsd_bond.bond_value 1.271 _pdbx_validate_rmsd_bond.bond_target_value 1.323 _pdbx_validate_rmsd_bond.bond_deviation -0.052 _pdbx_validate_rmsd_bond.bond_standard_deviation 0.008 _pdbx_validate_rmsd_bond.linker_flag N # _pdbx_validate_rmsd_angle.id 1 _pdbx_validate_rmsd_angle.PDB_model_num 1 _pdbx_validate_rmsd_angle.auth_atom_id_1 "O3'" _pdbx_validate_rmsd_angle.auth_asym_id_1 B _pdbx_validate_rmsd_angle.auth_comp_id_1 DG _pdbx_validate_rmsd_angle.auth_seq_id_1 12 _pdbx_validate_rmsd_angle.PDB_ins_code_1 ? _pdbx_validate_rmsd_angle.label_alt_id_1 ? _pdbx_validate_rmsd_angle.auth_atom_id_2 P _pdbx_validate_rmsd_angle.auth_asym_id_2 B _pdbx_validate_rmsd_angle.auth_comp_id_2 DG _pdbx_validate_rmsd_angle.auth_seq_id_2 13 _pdbx_validate_rmsd_angle.PDB_ins_code_2 ? _pdbx_validate_rmsd_angle.label_alt_id_2 ? _pdbx_validate_rmsd_angle.auth_atom_id_3 OP2 _pdbx_validate_rmsd_angle.auth_asym_id_3 B _pdbx_validate_rmsd_angle.auth_comp_id_3 DG _pdbx_validate_rmsd_angle.auth_seq_id_3 13 _pdbx_validate_rmsd_angle.PDB_ins_code_3 ? _pdbx_validate_rmsd_angle.label_alt_id_3 ? _pdbx_validate_rmsd_angle.angle_value 118.20 _pdbx_validate_rmsd_angle.angle_target_value 110.50 _pdbx_validate_rmsd_angle.angle_deviation 7.70 _pdbx_validate_rmsd_angle.angle_standard_deviation 1.10 _pdbx_validate_rmsd_angle.linker_flag Y # loop_ _pdbx_validate_planes.id _pdbx_validate_planes.PDB_model_num _pdbx_validate_planes.auth_comp_id _pdbx_validate_planes.auth_asym_id _pdbx_validate_planes.auth_seq_id _pdbx_validate_planes.PDB_ins_code _pdbx_validate_planes.label_alt_id _pdbx_validate_planes.rmsd _pdbx_validate_planes.type 1 1 DG B 12 ? ? 0.056 'SIDE CHAIN' 2 1 DG E 43 ? ? 0.064 'SIDE CHAIN' 3 1 DT E 46 ? ? 0.066 'SIDE CHAIN' 4 1 DG H 74 ? ? 0.060 'SIDE CHAIN' # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal DG OP3 O N N 1 DG P P N N 2 DG OP1 O N N 3 DG OP2 O N N 4 DG "O5'" O N N 5 DG "C5'" C N N 6 DG "C4'" C N R 7 DG "O4'" O N N 8 DG "C3'" C N S 9 DG "O3'" O N N 10 DG "C2'" C N N 11 DG "C1'" C N R 12 DG N9 N Y N 13 DG C8 C Y N 14 DG N7 N Y N 15 DG C5 C Y N 16 DG C6 C N N 17 DG O6 O N N 18 DG N1 N N N 19 DG C2 C N N 20 DG N2 N N N 21 DG N3 N N N 22 DG C4 C Y N 23 DG HOP3 H N N 24 DG HOP2 H N N 25 DG "H5'" H N N 26 DG "H5''" H N N 27 DG "H4'" H N N 28 DG "H3'" H N N 29 DG "HO3'" H N N 30 DG "H2'" H N N 31 DG "H2''" H N N 32 DG "H1'" H N N 33 DG H8 H N N 34 DG H1 H N N 35 DG H21 H N N 36 DG H22 H N N 37 DT OP3 O N N 38 DT P P N N 39 DT OP1 O N N 40 DT OP2 O N N 41 DT "O5'" O N N 42 DT "C5'" C N N 43 DT "C4'" C N R 44 DT "O4'" O N N 45 DT "C3'" C N S 46 DT "O3'" O N N 47 DT "C2'" C N N 48 DT "C1'" C N R 49 DT N1 N N N 50 DT C2 C N N 51 DT O2 O N N 52 DT N3 N N N 53 DT C4 C N N 54 DT O4 O N N 55 DT C5 C N N 56 DT C7 C N N 57 DT C6 C N N 58 DT HOP3 H N N 59 DT HOP2 H N N 60 DT "H5'" H N N 61 DT "H5''" H N N 62 DT "H4'" H N N 63 DT "H3'" H N N 64 DT "HO3'" H N N 65 DT "H2'" H N N 66 DT "H2''" H N N 67 DT "H1'" H N N 68 DT H3 H N N 69 DT H71 H N N 70 DT H72 H N N 71 DT H73 H N N 72 DT H6 H N N 73 HOH O O N N 74 HOH H1 H N N 75 HOH H2 H N N 76 LI LI LI N N 77 NA NA NA N N 78 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal DG OP3 P sing N N 1 DG OP3 HOP3 sing N N 2 DG P OP1 doub N N 3 DG P OP2 sing N N 4 DG P "O5'" sing N N 5 DG OP2 HOP2 sing N N 6 DG "O5'" "C5'" sing N N 7 DG "C5'" "C4'" sing N N 8 DG "C5'" "H5'" sing N N 9 DG "C5'" "H5''" sing N N 10 DG "C4'" "O4'" sing N N 11 DG "C4'" "C3'" sing N N 12 DG "C4'" "H4'" sing N N 13 DG "O4'" "C1'" sing N N 14 DG "C3'" "O3'" sing N N 15 DG "C3'" "C2'" sing N N 16 DG "C3'" "H3'" sing N N 17 DG "O3'" "HO3'" sing N N 18 DG "C2'" "C1'" sing N N 19 DG "C2'" "H2'" sing N N 20 DG "C2'" "H2''" sing N N 21 DG "C1'" N9 sing N N 22 DG "C1'" "H1'" sing N N 23 DG N9 C8 sing Y N 24 DG N9 C4 sing Y N 25 DG C8 N7 doub Y N 26 DG C8 H8 sing N N 27 DG N7 C5 sing Y N 28 DG C5 C6 sing N N 29 DG C5 C4 doub Y N 30 DG C6 O6 doub N N 31 DG C6 N1 sing N N 32 DG N1 C2 sing N N 33 DG N1 H1 sing N N 34 DG C2 N2 sing N N 35 DG C2 N3 doub N N 36 DG N2 H21 sing N N 37 DG N2 H22 sing N N 38 DG N3 C4 sing N N 39 DT OP3 P sing N N 40 DT OP3 HOP3 sing N N 41 DT P OP1 doub N N 42 DT P OP2 sing N N 43 DT P "O5'" sing N N 44 DT OP2 HOP2 sing N N 45 DT "O5'" "C5'" sing N N 46 DT "C5'" "C4'" sing N N 47 DT "C5'" "H5'" sing N N 48 DT "C5'" "H5''" sing N N 49 DT "C4'" "O4'" sing N N 50 DT "C4'" "C3'" sing N N 51 DT "C4'" "H4'" sing N N 52 DT "O4'" "C1'" sing N N 53 DT "C3'" "O3'" sing N N 54 DT "C3'" "C2'" sing N N 55 DT "C3'" "H3'" sing N N 56 DT "O3'" "HO3'" sing N N 57 DT "C2'" "C1'" sing N N 58 DT "C2'" "H2'" sing N N 59 DT "C2'" "H2''" sing N N 60 DT "C1'" N1 sing N N 61 DT "C1'" "H1'" sing N N 62 DT N1 C2 sing N N 63 DT N1 C6 sing N N 64 DT C2 O2 doub N N 65 DT C2 N3 sing N N 66 DT N3 C4 sing N N 67 DT N3 H3 sing N N 68 DT C4 O4 doub N N 69 DT C4 C5 sing N N 70 DT C5 C7 sing N N 71 DT C5 C6 doub N N 72 DT C7 H71 sing N N 73 DT C7 H72 sing N N 74 DT C7 H73 sing N N 75 DT C6 H6 sing N N 76 HOH O H1 sing N N 77 HOH O H2 sing N N 78 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 2O4F 'parallel strands' 2O4F 'mismatched base pair' 2O4F 'triple helix' 2O4F 'quadruple helix' # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'SODIUM ION' NA 3 'LITHIUM ION' LI 4 water HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 352D _pdbx_initial_refinement_model.details 'PDB ENTRY 352D' #