HEADER BIOSYNTHETIC PROTEIN 06-DEC-06 2O67 TITLE CRYSTAL STRUCTURE OF ARABIDOPSIS THALIANA PII BOUND TO MALONATE COMPND MOL_ID: 1; COMPND 2 MOLECULE: PII PROTEIN; COMPND 3 CHAIN: A, B, C; COMPND 4 SYNONYM: P II NITROGEN SENSING PROTEIN GLB I, AT4G01900; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ARABIDOPSIS THALIANA; SOURCE 3 ORGANISM_COMMON: THALE CRESS; SOURCE 4 ORGANISM_TAXID: 3702; SOURCE 5 GENE: AT4G01900, T7B11.16; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: ROSETTA-GAMI PLYSS; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET-3A KEYWDS REGULATION OF NITROGEN AND CARBON METABOLISM, BIOSYNTHETIC PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR Y.M.MIZUNO,B.BERENGER,G.B.G.MOORHEAD,K.K.S.NG REVDAT 3 30-AUG-23 2O67 1 REMARK SEQADV REVDAT 2 24-FEB-09 2O67 1 VERSN REVDAT 1 20-FEB-07 2O67 0 JRNL AUTH Y.MIZUNO,B.BERENGER,G.B.MOORHEAD,K.K.NG JRNL TITL CRYSTAL STRUCTURE OF ARABIDOPSIS PII REVEALS NOVEL JRNL TITL 2 STRUCTURAL ELEMENTS UNIQUE TO PLANTS. JRNL REF BIOCHEMISTRY V. 46 1477 2007 JRNL REFN ISSN 0006-2960 JRNL PMID 17279613 JRNL DOI 10.1021/BI062149E REMARK 2 REMARK 2 RESOLUTION. 2.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 10903 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.204 REMARK 3 R VALUE (WORKING SET) : 0.201 REMARK 3 FREE R VALUE : 0.266 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.800 REMARK 3 FREE R VALUE TEST SET COUNT : 552 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.50 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.56 REMARK 3 REFLECTION IN BIN (WORKING SET) : 777 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 97.70 REMARK 3 BIN R VALUE (WORKING SET) : 0.2490 REMARK 3 BIN FREE R VALUE SET COUNT : 30 REMARK 3 BIN FREE R VALUE : 0.4080 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2477 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 21 REMARK 3 SOLVENT ATOMS : 30 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 41.90 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 44.62 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.45000 REMARK 3 B22 (A**2) : -1.04000 REMARK 3 B33 (A**2) : 0.00000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.43000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.914 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.326 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.262 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 11.716 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.938 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.890 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2522 ; 0.008 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3379 ; 1.039 ; 1.978 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 311 ; 5.150 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 101 ;34.437 ;23.168 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 493 ;17.080 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 24 ;16.985 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 394 ; 0.063 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1810 ; 0.003 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1041 ; 0.178 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1719 ; 0.297 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 111 ; 0.120 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 39 ; 0.148 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 5 ; 0.127 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1606 ; 1.713 ; 2.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2541 ; 2.640 ; 2.500 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1018 ; 3.430 ; 3.500 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 838 ; 5.268 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2O67 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 08-DEC-06. REMARK 100 THE DEPOSITION ID IS D_1000040737. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 21-MAR-06 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU RU300 REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : MULTILAYER OPTICS REMARK 200 OPTICS : OSMIC MULTILAYER REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MAR SCANNER 345 MM PLATE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 11464 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.500 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 4.600 REMARK 200 R MERGE (I) : 0.10400 REMARK 200 R SYM (I) : 0.10400 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 14.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.59 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.2 REMARK 200 DATA REDUNDANCY IN SHELL : 4.00 REMARK 200 R MERGE FOR SHELL (I) : 0.51700 REMARK 200 R SYM FOR SHELL (I) : 0.51700 REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 2O66 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 34.70 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.88 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 2.5 M MALONATE, 0.1 M NA HEPES, PH REMARK 280 7.0, 10% GLYCEROL, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE REMARK 280 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 46.29700 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 33.36300 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 46.29700 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 33.36300 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: NATIVE HOMOTRIMER IS FOUND IN THE ASYMMETRIC UNIT REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 8610 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 13890 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -20.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: HEXAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 19900 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 25100 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -48.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 0 REMARK 465 GLN A 1 REMARK 465 ILE A 2 REMARK 465 ALA A 49 REMARK 465 GLN A 50 REMARK 465 GLY A 51 REMARK 465 GLY A 52 REMARK 465 SER A 53 REMARK 465 THR A 54 REMARK 465 GLU A 55 REMARK 465 ARG A 56 REMARK 465 HIS A 57 REMARK 465 GLY A 58 REMARK 465 GLY A 59 REMARK 465 SER A 60 REMARK 465 GLU A 61 REMARK 465 PHE A 62 REMARK 465 SER A 63 REMARK 465 ALA A 123 REMARK 465 GLU A 124 REMARK 465 LYS A 125 REMARK 465 MET A 126 REMARK 465 THR A 127 REMARK 465 GLY A 128 REMARK 465 ASP A 129 REMARK 465 MET A 130 REMARK 465 LEU A 131 REMARK 465 SER A 132 REMARK 465 PRO A 133 REMARK 465 SER A 134 REMARK 465 MET B 0 REMARK 465 GLN B 1 REMARK 465 ILE B 2 REMARK 465 SER B 3 REMARK 465 SER B 4 REMARK 465 ASP B 5 REMARK 465 GLY B 48 REMARK 465 ALA B 49 REMARK 465 GLN B 50 REMARK 465 GLY B 51 REMARK 465 GLY B 52 REMARK 465 SER B 53 REMARK 465 THR B 54 REMARK 465 GLU B 55 REMARK 465 ARG B 56 REMARK 465 HIS B 57 REMARK 465 GLY B 58 REMARK 465 GLY B 59 REMARK 465 SER B 60 REMARK 465 GLU B 61 REMARK 465 PHE B 62 REMARK 465 SER B 63 REMARK 465 GLU B 64 REMARK 465 LEU B 131 REMARK 465 SER B 132 REMARK 465 PRO B 133 REMARK 465 SER B 134 REMARK 465 MET C 0 REMARK 465 GLN C 1 REMARK 465 ILE C 2 REMARK 465 GLY C 48 REMARK 465 ALA C 49 REMARK 465 GLN C 50 REMARK 465 GLY C 51 REMARK 465 GLY C 52 REMARK 465 SER C 53 REMARK 465 THR C 54 REMARK 465 GLU C 55 REMARK 465 ARG C 56 REMARK 465 HIS C 57 REMARK 465 GLY C 58 REMARK 465 GLY C 59 REMARK 465 SER C 60 REMARK 465 GLU C 61 REMARK 465 PHE C 62 REMARK 465 SER C 63 REMARK 465 GLU C 64 REMARK 465 GLU C 124 REMARK 465 LYS C 125 REMARK 465 MET C 126 REMARK 465 THR C 127 REMARK 465 GLY C 128 REMARK 465 ASP C 129 REMARK 465 MET C 130 REMARK 465 LEU C 131 REMARK 465 SER C 132 REMARK 465 PRO C 133 REMARK 465 SER C 134 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS B 122 28.02 -78.27 REMARK 500 ALA B 123 -18.10 -147.75 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MLI B 135 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MLI B 136 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MLI C 135 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2O66 RELATED DB: PDB DBREF 2O67 A 1 134 UNP Q9ZST4 Q9ZST4_ARATH 63 196 DBREF 2O67 B 1 134 UNP Q9ZST4 Q9ZST4_ARATH 63 196 DBREF 2O67 C 1 134 UNP Q9ZST4 Q9ZST4_ARATH 63 196 SEQADV 2O67 MET A 0 UNP Q9ZST4 INITIATING METHIONINE SEQADV 2O67 MET B 0 UNP Q9ZST4 INITIATING METHIONINE SEQADV 2O67 MET C 0 UNP Q9ZST4 INITIATING METHIONINE SEQRES 1 A 135 MET GLN ILE SER SER ASP TYR ILE PRO ASP SER LYS PHE SEQRES 2 A 135 TYR LYS VAL GLU ALA ILE VAL ARG PRO TRP ARG ILE GLN SEQRES 3 A 135 GLN VAL SER SER ALA LEU LEU LYS ILE GLY ILE ARG GLY SEQRES 4 A 135 VAL THR VAL SER ASP VAL ARG GLY PHE GLY ALA GLN GLY SEQRES 5 A 135 GLY SER THR GLU ARG HIS GLY GLY SER GLU PHE SER GLU SEQRES 6 A 135 ASP LYS PHE VAL ALA LYS VAL LYS MET GLU ILE VAL VAL SEQRES 7 A 135 LYS LYS ASP GLN VAL GLU SER VAL ILE ASN THR ILE ILE SEQRES 8 A 135 GLU GLY ALA ARG THR GLY GLU ILE GLY ASP GLY LYS ILE SEQRES 9 A 135 PHE VAL LEU PRO VAL SER ASP VAL ILE ARG VAL ARG THR SEQRES 10 A 135 GLY GLU ARG GLY GLU LYS ALA GLU LYS MET THR GLY ASP SEQRES 11 A 135 MET LEU SER PRO SER SEQRES 1 B 135 MET GLN ILE SER SER ASP TYR ILE PRO ASP SER LYS PHE SEQRES 2 B 135 TYR LYS VAL GLU ALA ILE VAL ARG PRO TRP ARG ILE GLN SEQRES 3 B 135 GLN VAL SER SER ALA LEU LEU LYS ILE GLY ILE ARG GLY SEQRES 4 B 135 VAL THR VAL SER ASP VAL ARG GLY PHE GLY ALA GLN GLY SEQRES 5 B 135 GLY SER THR GLU ARG HIS GLY GLY SER GLU PHE SER GLU SEQRES 6 B 135 ASP LYS PHE VAL ALA LYS VAL LYS MET GLU ILE VAL VAL SEQRES 7 B 135 LYS LYS ASP GLN VAL GLU SER VAL ILE ASN THR ILE ILE SEQRES 8 B 135 GLU GLY ALA ARG THR GLY GLU ILE GLY ASP GLY LYS ILE SEQRES 9 B 135 PHE VAL LEU PRO VAL SER ASP VAL ILE ARG VAL ARG THR SEQRES 10 B 135 GLY GLU ARG GLY GLU LYS ALA GLU LYS MET THR GLY ASP SEQRES 11 B 135 MET LEU SER PRO SER SEQRES 1 C 135 MET GLN ILE SER SER ASP TYR ILE PRO ASP SER LYS PHE SEQRES 2 C 135 TYR LYS VAL GLU ALA ILE VAL ARG PRO TRP ARG ILE GLN SEQRES 3 C 135 GLN VAL SER SER ALA LEU LEU LYS ILE GLY ILE ARG GLY SEQRES 4 C 135 VAL THR VAL SER ASP VAL ARG GLY PHE GLY ALA GLN GLY SEQRES 5 C 135 GLY SER THR GLU ARG HIS GLY GLY SER GLU PHE SER GLU SEQRES 6 C 135 ASP LYS PHE VAL ALA LYS VAL LYS MET GLU ILE VAL VAL SEQRES 7 C 135 LYS LYS ASP GLN VAL GLU SER VAL ILE ASN THR ILE ILE SEQRES 8 C 135 GLU GLY ALA ARG THR GLY GLU ILE GLY ASP GLY LYS ILE SEQRES 9 C 135 PHE VAL LEU PRO VAL SER ASP VAL ILE ARG VAL ARG THR SEQRES 10 C 135 GLY GLU ARG GLY GLU LYS ALA GLU LYS MET THR GLY ASP SEQRES 11 C 135 MET LEU SER PRO SER HET MLI B 135 7 HET MLI B 136 7 HET MLI C 135 7 HETNAM MLI MALONATE ION FORMUL 4 MLI 3(C3 H2 O4 2-) FORMUL 7 HOH *30(H2 O) HELIX 1 1 ARG A 23 ILE A 34 1 12 HELIX 2 2 GLN A 81 ARG A 94 1 14 HELIX 3 3 ARG B 20 TRP B 22 5 3 HELIX 4 4 ARG B 23 ILE B 34 1 12 HELIX 5 5 GLN B 81 ARG B 94 1 14 HELIX 6 6 GLY B 120 LYS B 125 1 6 HELIX 7 7 ARG C 20 TRP C 22 5 3 HELIX 8 8 ARG C 23 LYS C 33 1 11 HELIX 9 9 GLN C 81 ARG C 94 1 14 HELIX 10 10 ARG C 119 ALA C 123 5 5 SHEET 1 A10 ASP B 110 ARG B 113 0 SHEET 2 A10 GLY A 101 VAL A 108 -1 N ILE A 103 O ILE B 112 SHEET 3 A10 PHE A 12 VAL A 19 -1 N LYS A 14 O LEU A 106 SHEET 4 A10 VAL A 68 LYS A 78 -1 O ILE A 75 N VAL A 15 SHEET 5 A10 THR A 40 GLY A 46 -1 N THR A 40 O GLU A 74 SHEET 6 A10 THR B 40 GLY B 46 -1 O VAL B 41 N ARG A 45 SHEET 7 A10 VAL B 68 LYS B 78 -1 O GLU B 74 N THR B 40 SHEET 8 A10 PHE B 12 VAL B 19 -1 N VAL B 15 O ILE B 75 SHEET 9 A10 LYS B 102 VAL B 108 -1 O LEU B 106 N LYS B 14 SHEET 10 A10 ASP C 110 ARG C 113 -1 O ILE C 112 N ILE B 103 SHEET 1 B10 ASP A 110 ARG A 113 0 SHEET 2 B10 LYS C 102 VAL C 108 -1 O VAL C 105 N ASP A 110 SHEET 3 B10 PHE C 12 VAL C 19 -1 N LYS C 14 O LEU C 106 SHEET 4 B10 VAL C 68 LYS C 78 -1 O MET C 73 N ALA C 17 SHEET 5 B10 THR C 40 GLY C 46 -1 N THR C 40 O GLU C 74 SHEET 6 B10 THR A 40 GLY A 46 -1 N VAL A 41 O ARG C 45 SHEET 7 B10 VAL A 68 LYS A 78 -1 O GLU A 74 N THR A 40 SHEET 8 B10 PHE A 12 VAL A 19 -1 N VAL A 15 O ILE A 75 SHEET 9 B10 GLY A 101 VAL A 108 -1 O LEU A 106 N LYS A 14 SHEET 10 B10 ASP B 110 ARG B 113 -1 O ILE B 112 N ILE A 103 SHEET 1 C10 ASP C 110 ARG C 113 0 SHEET 2 C10 LYS B 102 VAL B 108 -1 N ILE B 103 O ILE C 112 SHEET 3 C10 PHE B 12 VAL B 19 -1 N LYS B 14 O LEU B 106 SHEET 4 C10 VAL B 68 LYS B 78 -1 O ILE B 75 N VAL B 15 SHEET 5 C10 THR B 40 GLY B 46 -1 N THR B 40 O GLU B 74 SHEET 6 C10 THR C 40 GLY C 46 -1 O VAL C 41 N ARG B 45 SHEET 7 C10 VAL C 68 LYS C 78 -1 O GLU C 74 N THR C 40 SHEET 8 C10 PHE C 12 VAL C 19 -1 N ALA C 17 O MET C 73 SHEET 9 C10 LYS C 102 VAL C 108 -1 O LEU C 106 N LYS C 14 SHEET 10 C10 ASP A 110 ARG A 113 -1 N ASP A 110 O VAL C 105 CISPEP 1 ILE A 7 PRO A 8 0 -2.53 CISPEP 2 ILE B 7 PRO B 8 0 -2.52 CISPEP 3 ILE C 7 PRO C 8 0 -0.57 SITE 1 AC1 9 ILE A 98 GLY A 99 ASP A 100 GLY A 101 SITE 2 AC1 9 LYS A 102 HOH A 137 ARG B 113 ARG B 115 SITE 3 AC1 9 THR B 127 SITE 1 AC2 7 ILE B 98 GLY B 99 ASP B 100 GLY B 101 SITE 2 AC2 7 HOH B 142 ARG C 113 ARG C 115 SITE 1 AC3 8 ARG A 113 ARG A 115 ILE C 98 GLY C 99 SITE 2 AC3 8 ASP C 100 GLY C 101 LYS C 102 HOH C 141 CRYST1 92.594 66.726 61.489 90.00 118.41 90.00 C 1 2 1 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010800 0.000000 0.005842 0.00000 SCALE2 0.000000 0.014987 0.000000 0.00000 SCALE3 0.000000 0.000000 0.018490 0.00000