HEADER HYDROLASE 08-DEC-06 2O6X TITLE CRYSTAL STRUCTURE OF PROCATHEPSIN L1 FROM FASCIOLA HEPATICA COMPND MOL_ID: 1; COMPND 2 MOLECULE: SECRETED CATHEPSIN L 1; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: PROCATHEPSIN L1; COMPND 5 EC: 3.4.22.15; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES; COMPND 8 OTHER_DETAILS: INACTIVE ZYMOGEN FORM SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: FASCIOLA HEPATICA; SOURCE 3 ORGANISM_COMMON: LIVER FLUKE; SOURCE 4 ORGANISM_TAXID: 6192; SOURCE 5 STRAIN: IRISH ISOLATE; SOURCE 6 GENE: CL1; SOURCE 7 EXPRESSION_SYSTEM: PICHIA PASTORIS; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 4922; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: GS115; SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PPIC9K KEYWDS HYDROLASE; THIOL PROTEASE; CYSTEINE PROTEASE; ZYMOGEN, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR L.S.BRINEN,J.P.DALTON,S.GEIGER,R.MARION,C.M.STACK REVDAT 7 30-AUG-23 2O6X 1 REMARK REVDAT 6 20-OCT-21 2O6X 1 SEQADV REVDAT 5 18-OCT-17 2O6X 1 REMARK REVDAT 4 09-MAR-11 2O6X 1 REMARK REVDAT 3 24-FEB-09 2O6X 1 VERSN REVDAT 2 22-JUL-08 2O6X 1 JRNL REVDAT 1 18-DEC-07 2O6X 0 JRNL AUTH C.M.STACK,C.R.CAFFREY,S.M.DONNELLY,A.SESHAADRI,J.LOWTHER, JRNL AUTH 2 J.F.TORT,P.R.COLLINS,M.W.ROBINSON,W.XU,J.H.MCKERROW, JRNL AUTH 3 C.S.CRAIK,S.R.GEIGER,R.MARION,L.S.BRINEN,J.P.DALTON JRNL TITL STRUCTURAL AND FUNCTIONAL RELATIONSHIPS IN THE JRNL TITL 2 VIRULENCE-ASSOCIATED CATHEPSIN L PROTEASES OF THE PARASITIC JRNL TITL 3 LIVER FLUKE, FASCIOLA HEPATICA. JRNL REF J.BIOL.CHEM. V. 283 9896 2008 JRNL REFN ISSN 0021-9258 JRNL PMID 18160404 JRNL DOI 10.1074/JBC.M708521200 REMARK 2 REMARK 2 RESOLUTION. 1.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0005 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 52.93 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 56141 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.129 REMARK 3 R VALUE (WORKING SET) : 0.128 REMARK 3 FREE R VALUE : 0.165 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.050 REMARK 3 FREE R VALUE TEST SET COUNT : 2985 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.40 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.44 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3874 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 94.85 REMARK 3 BIN R VALUE (WORKING SET) : 0.2270 REMARK 3 BIN FREE R VALUE SET COUNT : 199 REMARK 3 BIN FREE R VALUE : 0.2870 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2433 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 388 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 12.35 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 14.07 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.10000 REMARK 3 B22 (A**2) : 0.04000 REMARK 3 B33 (A**2) : 0.07000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.056 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.053 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.032 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): NULL REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.978 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.965 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2515 ; 0.020 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): 2154 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3406 ; 1.792 ; 1.925 REMARK 3 BOND ANGLES OTHERS (DEGREES): 5020 ; 1.310 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 310 ; 7.273 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 128 ;33.105 ;24.062 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 419 ;13.278 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 16 ;18.535 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 348 ; 0.118 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1961 ; 0.016 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 541 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 549 ; 0.224 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 2318 ; 0.201 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1745 ; 0.312 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 1422 ; 0.093 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 292 ; 0.174 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): 1 ; 0.185 ; 0.200 REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 31 ; 0.272 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 124 ; 0.309 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 58 ; 0.320 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): 41 ; 0.226 ; 0.200 REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1937 ; 2.459 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 641 ; 0.821 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2422 ; 2.900 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1204 ; 4.390 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 981 ; 5.880 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 5814 ; 3.174 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): 391 ; 8.345 ; 3.000 REMARK 3 SPHERICITY; BONDED ATOMS (A**2): 4605 ; 3.986 ; 3.000 REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 2O6X COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 18-DEC-06. REMARK 100 THE DEPOSITION ID IS D_1000040763. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 12-JAN-04 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 8.3.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.11588 REMARK 200 MONOCHROMATOR : SI 111 REMARK 200 OPTICS : SI 111 MONOCHROMATOR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 59595 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.400 REMARK 200 RESOLUTION RANGE LOW (A) : 57.260 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 5.600 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.08000 REMARK 200 FOR THE DATA SET : 14.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.48 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.7 REMARK 200 DATA REDUNDANCY IN SHELL : 2.30 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.54900 REMARK 200 FOR SHELL : 1.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: POLYSERINE MODEL DERIVED FROM PDB ID 1CS8 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 42.12 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.13 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2M NASCN, 20% PEG 3350, PH 7.0, REMARK 280 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 296K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 28.63550 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 52.98050 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 28.63550 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 52.98050 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1570 ANGSTROM**2 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 57.27100 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 526 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA A 94 REMARK 465 ASN A 95 REMARK 465 ASN A 96 REMARK 465 ARG A 97 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 CYS A 253 CB CYS A 253 SG -0.146 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 196 NE - CZ - NH1 ANGL. DEV. = 6.7 DEGREES REMARK 500 ARG A 196 NE - CZ - NH2 ANGL. DEV. = -5.7 DEGREES REMARK 500 ARG A 244 NE - CZ - NH1 ANGL. DEV. = 5.2 DEGREES REMARK 500 ARG A 244 NE - CZ - NH2 ANGL. DEV. = -10.1 DEGREES REMARK 500 PRO A 317 C - N - CA ANGL. DEV. = -9.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 CYS A 302 19.83 59.44 REMARK 500 LEU A 307 43.64 -146.98 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 PHE A 316 PRO A 317 -101.90 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1CJL RELATED DB: PDB REMARK 900 HUMAN PROCATHEPSIN L DBREF 2O6X A 8 317 UNP Q7JNQ9 Q7JNQ9_FASHE 17 326 SEQADV 2O6X GLY A 123 UNP Q7JNQ9 CYS 132 ENGINEERED MUTATION SEQRES 1 A 310 ASN ASP ASP LEU TRP HIS GLN TRP LYS ARG MET TYR ASN SEQRES 2 A 310 LYS GLU TYR ASN GLY ALA ASP ASP GLN HIS ARG ARG ASN SEQRES 3 A 310 ILE TRP GLU LYS ASN VAL LYS HIS ILE GLN GLU HIS ASN SEQRES 4 A 310 LEU ARG HIS ASP LEU GLY LEU VAL THR TYR THR LEU GLY SEQRES 5 A 310 LEU ASN GLN PHE THR ASP MET THR PHE GLU GLU PHE LYS SEQRES 6 A 310 ALA LYS TYR LEU THR GLU MET SER ARG ALA SER ASP ILE SEQRES 7 A 310 LEU SER HIS GLY VAL PRO TYR GLU ALA ASN ASN ARG ALA SEQRES 8 A 310 VAL PRO ASP LYS ILE ASP TRP ARG GLU SER GLY TYR VAL SEQRES 9 A 310 THR GLU VAL LYS ASP GLN GLY ASN CYS GLY SER GLY TRP SEQRES 10 A 310 ALA PHE SER THR THR GLY THR MET GLU GLY GLN TYR MET SEQRES 11 A 310 LYS ASN GLU ARG THR SER ILE SER PHE SER GLU GLN GLN SEQRES 12 A 310 LEU VAL ASP CYS SER ARG PRO TRP GLY ASN ASN GLY CYS SEQRES 13 A 310 GLY GLY GLY LEU MET GLU ASN ALA TYR GLN TYR LEU LYS SEQRES 14 A 310 GLN PHE GLY LEU GLU THR GLU SER SER TYR PRO TYR THR SEQRES 15 A 310 ALA VAL GLU GLY GLN CYS ARG TYR ASN LYS GLN LEU GLY SEQRES 16 A 310 VAL ALA LYS VAL THR GLY PHE TYR THR VAL HIS SER GLY SEQRES 17 A 310 SER GLU VAL GLU LEU LYS ASN LEU VAL GLY ALA GLU GLY SEQRES 18 A 310 PRO ALA ALA VAL ALA VAL ASP VAL GLU SER ASP PHE MET SEQRES 19 A 310 MET TYR ARG SER GLY ILE TYR GLN SER GLN THR CYS SER SEQRES 20 A 310 PRO LEU ARG VAL ASN HIS ALA VAL LEU ALA VAL GLY TYR SEQRES 21 A 310 GLY THR GLN GLY GLY THR ASP TYR TRP ILE VAL LYS ASN SEQRES 22 A 310 SER TRP GLY LEU SER TRP GLY GLU ARG GLY TYR ILE ARG SEQRES 23 A 310 MET VAL ARG ASN ARG GLY ASN MET CYS GLY ILE ALA SER SEQRES 24 A 310 LEU ALA SER LEU PRO MET VAL ALA ARG PHE PRO FORMUL 2 HOH *388(H2 O) HELIX 1 1 ASN A 8 ASN A 20 1 13 HELIX 2 2 ASN A 24 LEU A 51 1 28 HELIX 3 3 THR A 67 LEU A 76 1 10 HELIX 4 4 ARG A 81 LEU A 86 5 6 HELIX 5 5 ARG A 106 GLY A 109 5 4 HELIX 6 6 SER A 122 ARG A 141 1 20 HELIX 7 7 SER A 147 SER A 155 1 9 HELIX 8 8 ARG A 156 GLY A 159 5 4 HELIX 9 9 ASN A 161 GLY A 165 5 5 HELIX 10 10 LEU A 167 LYS A 176 1 10 HELIX 11 11 ASN A 198 GLY A 202 5 5 HELIX 12 12 SER A 216 GLY A 228 1 13 HELIX 13 13 GLU A 237 MET A 242 1 6 HELIX 14 14 ASN A 300 ILE A 304 5 5 SHEET 1 A 6 TYR A 56 LEU A 58 0 SHEET 2 A 6 TYR A 243 TYR A 248 -1 O SER A 245 N THR A 57 SHEET 3 A 6 TYR A 291 VAL A 295 1 O ARG A 293 N TYR A 248 SHEET 4 A 6 THR A 273 LYS A 279 -1 N TRP A 276 O MET A 294 SHEET 5 A 6 HIS A 260 GLN A 270 -1 N LEU A 263 O LYS A 279 SHEET 6 A 6 ILE A 103 ASP A 104 -1 N ILE A 103 O TYR A 267 SHEET 1 B 6 TYR A 56 LEU A 58 0 SHEET 2 B 6 TYR A 243 TYR A 248 -1 O SER A 245 N THR A 57 SHEET 3 B 6 TYR A 291 VAL A 295 1 O ARG A 293 N TYR A 248 SHEET 4 B 6 THR A 273 LYS A 279 -1 N TRP A 276 O MET A 294 SHEET 5 B 6 HIS A 260 GLN A 270 -1 N LEU A 263 O LYS A 279 SHEET 6 B 6 ALA A 230 VAL A 234 -1 N ALA A 230 O ALA A 264 SHEET 1 C 3 VAL A 90 PRO A 91 0 SHEET 2 C 3 ALA A 204 VAL A 212 1 O PHE A 209 N VAL A 90 SHEET 3 C 3 ALA A 308 ARG A 315 -1 O LEU A 310 N TYR A 210 SSBOND 1 CYS A 120 CYS A 163 1555 1555 2.07 SSBOND 2 CYS A 154 CYS A 195 1555 1555 2.13 SSBOND 3 CYS A 253 CYS A 302 1555 1555 2.83 CRYST1 57.271 105.961 49.180 90.00 90.00 90.00 P 21 21 2 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017461 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009437 0.000000 0.00000 SCALE3 0.000000 0.000000 0.020333 0.00000