HEADER SIGNALING PROTEIN 12-DEC-06 2O88 TITLE CRYSTAL STRUCTURE OF THE N114A MUTANT OF ABL-SH3 DOMAIN COMPLEXED WITH TITLE 2 A DESIGNED HIGH-AFFINITY PEPTIDE LIGAND: IMPLICATIONS FOR SH3-LIGAND TITLE 3 INTERACTIONS COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTO-ONCOGENE TYROSINE-PROTEIN KINASE ABL1; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: SH3 DOMAIN, RESIDUES 64-121; COMPND 5 SYNONYM: P150, C- ABL, ABELSON MURINE LEUKEMIA VIRAL ONCOGENE HOMOLOG COMPND 6 1; COMPND 7 EC: 2.7.10.2; COMPND 8 ENGINEERED: YES; COMPND 9 MUTATION: YES; COMPND 10 MOL_ID: 2; COMPND 11 MOLECULE: P41 PEPTIDE; COMPND 12 CHAIN: C, D; COMPND 13 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 STRAIN: PBAT4; SOURCE 6 GENE: ABL1, ABL, JTK7; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: BL21 (DE3); SOURCE 10 MOL_ID: 2; SOURCE 11 SYNTHETIC: YES; SOURCE 12 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 13 ORGANISM_TAXID: 32630 KEYWDS SH3 DOMAIN HIGH AFFINITY PEPTIDE COMPLEX, SIGNALING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR A.CAMARA-ARTIGAS REVDAT 7 30-OCT-24 2O88 1 REMARK REVDAT 6 30-AUG-23 2O88 1 REMARK REVDAT 5 20-OCT-21 2O88 1 SOURCE REMARK SEQADV LINK REVDAT 4 18-OCT-17 2O88 1 REMARK REVDAT 3 13-JUL-11 2O88 1 VERSN REVDAT 2 24-FEB-09 2O88 1 VERSN REVDAT 1 01-MAY-07 2O88 0 JRNL AUTH A.CAMARA-ARTIGAS,A.PALENCIA,J.C.MARTINEZ,I.LUQUE,J.A.GAVIRA, JRNL AUTH 2 J.M.GARCIA-RUIZ JRNL TITL CRYSTALLIZATION BY CAPILLARY COUNTER-DIFFUSION AND STRUCTURE JRNL TITL 2 DETERMINATION OF THE N114A MUTANT OF THE SH3 DOMAIN OF ABL JRNL TITL 3 TYROSINE KINASE COMPLEXED WITH A HIGH-AFFINITY PEPTIDE JRNL TITL 4 LIGAND. JRNL REF ACTA CRYSTALLOGR.,SECT.D V. 63 646 2007 JRNL REFN ISSN 0907-4449 JRNL PMID 17452790 JRNL DOI 10.1107/S0907444907011109 REMARK 2 REMARK 2 RESOLUTION. 1.75 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.75 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 92.2 REMARK 3 NUMBER OF REFLECTIONS : 13178 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.171 REMARK 3 R VALUE (WORKING SET) : 0.169 REMARK 3 FREE R VALUE : 0.213 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 647 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.75 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.80 REMARK 3 REFLECTION IN BIN (WORKING SET) : 745 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 74.60 REMARK 3 BIN R VALUE (WORKING SET) : 0.2060 REMARK 3 BIN FREE R VALUE SET COUNT : 39 REMARK 3 BIN FREE R VALUE : 0.2680 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1037 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 10 REMARK 3 SOLVENT ATOMS : 67 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 19.27 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 24.29 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.17000 REMARK 3 B22 (A**2) : -0.01000 REMARK 3 B33 (A**2) : 0.18000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.116 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.117 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.074 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.793 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.967 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.954 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1087 ; 0.008 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 1497 ; 1.744 ; 1.977 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 134 ; 5.543 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 45 ;33.415 ;25.111 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 144 ;14.989 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 2 ;24.692 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 156 ; 0.112 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 858 ; 0.009 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 359 ; 0.206 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 728 ; 0.312 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 38 ; 0.193 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 33 ; 0.155 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 8 ; 0.301 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 701 ; 1.067 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1110 ; 1.580 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 458 ; 2.361 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 385 ; 3.443 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : 2 REMARK 3 REMARK 3 NCS GROUP NUMBER : 1 REMARK 3 CHAIN NAMES : A B REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 1 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 65 A 119 4 REMARK 3 1 B 65 B 119 4 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 MEDIUM POSITIONAL 1 A (A): 428 ; 0.320 ; 0.500 REMARK 3 MEDIUM THERMAL 1 A (A**2): 428 ; 0.880 ; 2.000 REMARK 3 REMARK 3 NCS GROUP NUMBER : 2 REMARK 3 CHAIN NAMES : C D REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 1 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 C 1 C 10 4 REMARK 3 1 D 1 D 10 4 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 MEDIUM POSITIONAL 2 C (A): 75 ; 0.090 ; 0.500 REMARK 3 MEDIUM THERMAL 2 C (A**2): 75 ; 0.490 ; 2.000 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 12 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 64 A 74 REMARK 3 ORIGIN FOR THE GROUP (A): -4.4397 -10.1287 13.5651 REMARK 3 T TENSOR REMARK 3 T11: -0.0901 T22: -0.1067 REMARK 3 T33: -0.2088 T12: 0.0117 REMARK 3 T13: 0.0185 T23: -0.0438 REMARK 3 L TENSOR REMARK 3 L11: 10.5777 L22: 15.0570 REMARK 3 L33: 5.1912 L12: 5.4335 REMARK 3 L13: 0.5582 L23: 1.6293 REMARK 3 S TENSOR REMARK 3 S11: 0.2108 S12: -0.0537 S13: 0.2719 REMARK 3 S21: -0.1049 S22: 0.0164 S23: -0.1308 REMARK 3 S31: -0.1648 S32: 0.0708 S33: -0.2273 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 75 A 86 REMARK 3 ORIGIN FOR THE GROUP (A): -9.2682 -14.3911 9.9087 REMARK 3 T TENSOR REMARK 3 T11: -0.0553 T22: -0.1371 REMARK 3 T33: -0.2044 T12: 0.0045 REMARK 3 T13: -0.0155 T23: -0.0264 REMARK 3 L TENSOR REMARK 3 L11: 48.0224 L22: 6.9319 REMARK 3 L33: 2.2929 L12: 10.9001 REMARK 3 L13: -0.5203 L23: 0.4124 REMARK 3 S TENSOR REMARK 3 S11: -0.1179 S12: 0.0138 S13: -0.6152 REMARK 3 S21: -0.2062 S22: 0.1651 S23: -0.1188 REMARK 3 S31: 0.1754 S32: 0.0346 S33: -0.0472 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 87 A 93 REMARK 3 ORIGIN FOR THE GROUP (A): -10.1293 -2.6812 12.0597 REMARK 3 T TENSOR REMARK 3 T11: -0.0556 T22: -0.0889 REMARK 3 T33: 0.2230 T12: -0.0114 REMARK 3 T13: 0.0008 T23: 0.1056 REMARK 3 L TENSOR REMARK 3 L11: 35.5955 L22: 7.0815 REMARK 3 L33: 22.0563 L12: -1.1015 REMARK 3 L13: -22.6557 L23: 4.2454 REMARK 3 S TENSOR REMARK 3 S11: -0.5677 S12: 0.1463 S13: 1.6164 REMARK 3 S21: 0.0141 S22: 0.5235 S23: 1.0688 REMARK 3 S31: -0.0925 S32: 0.3751 S33: 0.0441 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 94 A 100 REMARK 3 ORIGIN FOR THE GROUP (A): -16.5271 -9.6135 21.3094 REMARK 3 T TENSOR REMARK 3 T11: -0.0118 T22: -0.0573 REMARK 3 T33: -0.0345 T12: -0.0462 REMARK 3 T13: 0.0480 T23: -0.0926 REMARK 3 L TENSOR REMARK 3 L11: 25.3671 L22: 10.7681 REMARK 3 L33: 41.2818 L12: -2.9296 REMARK 3 L13: 6.0128 L23: 10.1890 REMARK 3 S TENSOR REMARK 3 S11: 0.4464 S12: -1.8503 S13: 0.9096 REMARK 3 S21: 1.1413 S22: -0.3908 S23: 0.8194 REMARK 3 S31: -0.1489 S32: -0.8227 S33: -0.0555 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 101 A 121 REMARK 3 ORIGIN FOR THE GROUP (A): -7.9996 -7.1671 12.2045 REMARK 3 T TENSOR REMARK 3 T11: -0.0709 T22: -0.1046 REMARK 3 T33: -0.1119 T12: -0.0083 REMARK 3 T13: 0.0111 T23: 0.0095 REMARK 3 L TENSOR REMARK 3 L11: 9.8850 L22: 4.0983 REMARK 3 L33: 3.8152 L12: 4.0115 REMARK 3 L13: 1.0048 L23: -0.5144 REMARK 3 S TENSOR REMARK 3 S11: -0.1035 S12: 0.7569 S13: 0.6059 REMARK 3 S21: -0.1611 S22: 0.3381 S23: 0.0412 REMARK 3 S31: -0.3394 S32: 0.2520 S33: -0.2346 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 64 B 81 REMARK 3 ORIGIN FOR THE GROUP (A): -27.6095 -3.5302 0.9099 REMARK 3 T TENSOR REMARK 3 T11: -0.0941 T22: -0.2160 REMARK 3 T33: -0.1377 T12: -0.0421 REMARK 3 T13: -0.0106 T23: -0.0162 REMARK 3 L TENSOR REMARK 3 L11: 12.0372 L22: 4.8029 REMARK 3 L33: 7.1684 L12: -3.3993 REMARK 3 L13: -1.4402 L23: 1.7441 REMARK 3 S TENSOR REMARK 3 S11: 0.1846 S12: 0.0403 S13: 0.0348 REMARK 3 S21: 0.0249 S22: -0.2220 S23: -0.0663 REMARK 3 S31: 0.0141 S32: -0.0185 S33: 0.0374 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 82 B 87 REMARK 3 ORIGIN FOR THE GROUP (A): -34.1139 -6.8420 2.5733 REMARK 3 T TENSOR REMARK 3 T11: -0.0532 T22: -0.0997 REMARK 3 T33: -0.0679 T12: -0.0486 REMARK 3 T13: -0.0053 T23: -0.0324 REMARK 3 L TENSOR REMARK 3 L11: 26.8715 L22: 1.5272 REMARK 3 L33: 21.8163 L12: 3.9249 REMARK 3 L13: -5.3275 L23: -1.4058 REMARK 3 S TENSOR REMARK 3 S11: 0.0417 S12: -0.2506 S13: -0.5805 REMARK 3 S21: 0.2184 S22: -0.3299 S23: 0.2437 REMARK 3 S31: 0.5753 S32: -0.7375 S33: 0.2882 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 88 B 93 REMARK 3 ORIGIN FOR THE GROUP (A): -24.4538 -2.2689 10.6468 REMARK 3 T TENSOR REMARK 3 T11: 0.0043 T22: -0.0930 REMARK 3 T33: -0.1136 T12: 0.0057 REMARK 3 T13: -0.0413 T23: 0.0142 REMARK 3 L TENSOR REMARK 3 L11: 17.8597 L22: 14.5382 REMARK 3 L33: 4.7684 L12: 12.3674 REMARK 3 L13: -3.7376 L23: 1.8282 REMARK 3 S TENSOR REMARK 3 S11: -0.6034 S12: -0.2560 S13: 0.0842 REMARK 3 S21: 0.2484 S22: 0.2853 S23: 0.0928 REMARK 3 S31: -0.2949 S32: -0.1054 S33: 0.3181 REMARK 3 REMARK 3 TLS GROUP : 9 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 94 B 101 REMARK 3 ORIGIN FOR THE GROUP (A): -19.7512 4.9652 3.5082 REMARK 3 T TENSOR REMARK 3 T11: -0.0737 T22: -0.1112 REMARK 3 T33: -0.0602 T12: -0.0463 REMARK 3 T13: 0.0085 T23: -0.0201 REMARK 3 L TENSOR REMARK 3 L11: 15.5422 L22: 24.1529 REMARK 3 L33: 10.4564 L12: -5.3586 REMARK 3 L13: 3.7590 L23: -0.2282 REMARK 3 S TENSOR REMARK 3 S11: 0.1257 S12: -0.1782 S13: 1.2270 REMARK 3 S21: 0.1030 S22: -0.2405 S23: -0.0016 REMARK 3 S31: -0.6917 S32: 0.6493 S33: 0.1148 REMARK 3 REMARK 3 TLS GROUP : 10 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 102 B 119 REMARK 3 ORIGIN FOR THE GROUP (A): -27.0019 -3.7559 4.8880 REMARK 3 T TENSOR REMARK 3 T11: -0.0692 T22: -0.1536 REMARK 3 T33: -0.1833 T12: -0.0227 REMARK 3 T13: 0.0063 T23: -0.0139 REMARK 3 L TENSOR REMARK 3 L11: 7.3843 L22: 6.3706 REMARK 3 L33: 3.6019 L12: -3.6985 REMARK 3 L13: 0.5729 L23: -2.0850 REMARK 3 S TENSOR REMARK 3 S11: 0.0359 S12: -0.2128 S13: -0.2745 REMARK 3 S21: 0.3101 S22: -0.1401 S23: 0.2659 REMARK 3 S31: 0.1505 S32: -0.0734 S33: 0.1042 REMARK 3 REMARK 3 TLS GROUP : 11 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 1 C 10 REMARK 3 ORIGIN FOR THE GROUP (A): -12.6057 -17.4357 20.3005 REMARK 3 T TENSOR REMARK 3 T11: -0.0397 T22: -0.0989 REMARK 3 T33: -0.0641 T12: -0.0396 REMARK 3 T13: -0.0004 T23: 0.0680 REMARK 3 L TENSOR REMARK 3 L11: 6.5322 L22: 10.9356 REMARK 3 L33: 12.0380 L12: -7.7112 REMARK 3 L13: 6.9732 L23: -8.6821 REMARK 3 S TENSOR REMARK 3 S11: -0.1506 S12: -0.0100 S13: 0.1985 REMARK 3 S21: 0.3946 S22: -0.3414 S23: -0.4638 REMARK 3 S31: -0.0291 S32: 0.7284 S33: 0.4920 REMARK 3 REMARK 3 TLS GROUP : 12 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 1 D 10 REMARK 3 ORIGIN FOR THE GROUP (A): -23.3061 4.5074 -4.7948 REMARK 3 T TENSOR REMARK 3 T11: -0.0110 T22: -0.0772 REMARK 3 T33: -0.1117 T12: -0.0081 REMARK 3 T13: 0.0222 T23: 0.0568 REMARK 3 L TENSOR REMARK 3 L11: 15.6762 L22: 8.6992 REMARK 3 L33: 7.0921 L12: -4.2844 REMARK 3 L13: 0.6404 L23: -4.5179 REMARK 3 S TENSOR REMARK 3 S11: 0.2599 S12: 0.2346 S13: 0.0810 REMARK 3 S21: 0.2140 S22: 0.0660 S23: 0.4037 REMARK 3 S31: -0.2438 S32: -0.2469 S33: -0.3259 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 2O88 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 05-JAN-07. REMARK 100 THE DEPOSITION ID IS D_1000040810. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 02-FEB-06 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : BRUKER AXS MICROSTAR REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.54 REMARK 200 MONOCHROMATOR : BRUKER MICROSTAR MICRO-FOCUS REMARK 200 (MONTEL OPTICS) REMARK 200 OPTICS : BRUKER MICROSTAR MICRO-FOCUS REMARK 200 (MONTEL OPTICS) REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : BRUKER SMART 6000 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO, SAINT REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 13236 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.750 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 92.2 REMARK 200 DATA REDUNDANCY : 5.900 REMARK 200 R MERGE (I) : 0.06820 REMARK 200 R SYM (I) : 0.04150 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 16.4300 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.75 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.85 REMARK 200 COMPLETENESS FOR SHELL (%) : 75.8 REMARK 200 DATA REDUNDANCY IN SHELL : 2.79 REMARK 200 R MERGE FOR SHELL (I) : 0.24530 REMARK 200 R SYM FOR SHELL (I) : 0.21900 REMARK 200 <I/SIGMA(I)> FOR SHELL : 4.410 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 1BBZ REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.36 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.29 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: AMMONIUN SULPHATE, PH 7, CAPILLARY REMARK 280 COUNTER DIFFUSION, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 24.08500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 28.21550 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 25.04650 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 28.21550 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 24.08500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 25.04650 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE BIOLOGICAL ASSEMBLY IS FORMED BY THE SH3 DOMAIN (CHAIN REMARK 300 A/B) COMPLEXED WITH THE ACETYLATED PEPTIDE P41 (CHAIN C/D) REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1280 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 4360 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -26.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1280 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 4050 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -26.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASN B 120 REMARK 465 SER B 121 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 71 CB - CG - OD1 ANGL. DEV. = 5.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 122 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 122 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1BBZ RELATED DB: PDB REMARK 900 WT STRUCTURE DBREF 2O88 A 64 121 UNP P00519 ABL1_HUMAN 64 121 DBREF 2O88 B 64 121 UNP P00519 ABL1_HUMAN 64 121 DBREF 2O88 C 0 10 PDB 2O88 2O88 0 10 DBREF 2O88 D 0 10 PDB 2O88 2O88 0 10 SEQADV 2O88 ALA A 114 UNP P00519 ASN 114 ENGINEERED MUTATION SEQADV 2O88 ALA B 114 UNP P00519 ASN 114 ENGINEERED MUTATION SEQRES 1 A 58 ASN LEU PHE VAL ALA LEU TYR ASP PHE VAL ALA SER GLY SEQRES 2 A 58 ASP ASN THR LEU SER ILE THR LYS GLY GLU LYS LEU ARG SEQRES 3 A 58 VAL LEU GLY TYR ASN HIS ASN GLY GLU TRP CYS GLU ALA SEQRES 4 A 58 GLN THR LYS ASN GLY GLN GLY TRP VAL PRO SER ALA TYR SEQRES 5 A 58 ILE THR PRO VAL ASN SER SEQRES 1 B 58 ASN LEU PHE VAL ALA LEU TYR ASP PHE VAL ALA SER GLY SEQRES 2 B 58 ASP ASN THR LEU SER ILE THR LYS GLY GLU LYS LEU ARG SEQRES 3 B 58 VAL LEU GLY TYR ASN HIS ASN GLY GLU TRP CYS GLU ALA SEQRES 4 B 58 GLN THR LYS ASN GLY GLN GLY TRP VAL PRO SER ALA TYR SEQRES 5 B 58 ILE THR PRO VAL ASN SER SEQRES 1 C 11 ACE ALA PRO SER TYR SER PRO PRO PRO PRO PRO SEQRES 1 D 11 ACE ALA PRO SER TYR SER PRO PRO PRO PRO PRO HET ACE C 0 3 HET ACE D 0 3 HET SO4 A 122 5 HET SO4 B 122 5 HETNAM ACE ACETYL GROUP HETNAM SO4 SULFATE ION FORMUL 3 ACE 2(C2 H4 O) FORMUL 5 SO4 2(O4 S 2-) FORMUL 7 HOH *67(H2 O) SHEET 1 A 5 GLY A 107 PRO A 112 0 SHEET 2 A 5 TRP A 99 THR A 104 -1 N CYS A 100 O VAL A 111 SHEET 3 A 5 LYS A 87 TYR A 93 -1 N LEU A 91 O GLU A 101 SHEET 4 A 5 LEU A 65 ALA A 68 -1 N PHE A 66 O LEU A 88 SHEET 5 A 5 ILE A 116 PRO A 118 -1 O THR A 117 N VAL A 67 SHEET 1 B 5 GLY B 107 PRO B 112 0 SHEET 2 B 5 TRP B 99 THR B 104 -1 N ALA B 102 O GLY B 109 SHEET 3 B 5 LYS B 87 TYR B 93 -1 N LEU B 91 O GLU B 101 SHEET 4 B 5 PHE B 66 ALA B 68 -1 N PHE B 66 O LEU B 88 SHEET 5 B 5 ILE B 116 PRO B 118 -1 O THR B 117 N VAL B 67 LINK C ACE C 0 N ALA C 1 1555 1555 1.33 LINK C ACE D 0 N ALA D 1 1555 1555 1.33 SITE 1 AC1 6 ARG A 89 ASN B 94 HIS B 95 HOH B 143 SITE 2 AC1 6 ACE D 0 ALA D 1 SITE 1 AC2 6 ASN A 94 HIS A 95 HOH A 133 ARG B 89 SITE 2 AC2 6 ACE C 0 ALA C 1 CRYST1 48.170 50.093 56.431 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.020760 0.000000 0.000000 0.00000 SCALE2 0.000000 0.019963 0.000000 0.00000 SCALE3 0.000000 0.000000 0.017721 0.00000