HEADER VIRAL PROTEIN 12-DEC-06 2O8M TITLE CRYSTAL STRUCTURE OF THE S139A MUTANT OF HEPATITIS C VIRUS NS3/4A TITLE 2 PROTEASE COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTEASE; COMPND 3 CHAIN: A, B; COMPND 4 EC: 3.4.22.-; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: PROTEASE; COMPND 9 CHAIN: C, D; COMPND 10 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HEPATITIS C VIRUS; SOURCE 3 ORGANISM_TAXID: 11103; SOURCE 4 GENE: HCV; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 MOL_ID: 2; SOURCE 8 SYNTHETIC: YES KEYWDS SERINE PROTEASE, NS3, NS4A, HEPATITIS C VIRUS, VIRAL PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR T.O.FISCHMANN,A.J.PRONGAY,V.M.MADISON,N.YAO REVDAT 5 27-DEC-23 2O8M 1 REMARK REVDAT 4 28-JUL-21 2O8M 1 REMARK SEQADV LINK REVDAT 3 18-OCT-17 2O8M 1 REMARK REVDAT 2 24-FEB-09 2O8M 1 VERSN REVDAT 1 09-OCT-07 2O8M 0 JRNL AUTH A.J.PRONGAY,Z.GUO,N.YAO,J.PICHARDO,T.FISCHMANN,C.STRICKLAND, JRNL AUTH 2 J.MYERS,P.C.WEBER,B.M.BEYER,R.INGRAM,Z.HONG,W.W.PROSISE, JRNL AUTH 3 L.RAMANATHAN,S.S.TAREMI,T.YAROSH-TOMAINE,R.ZHANG,M.SENIOR, JRNL AUTH 4 R.S.YANG,B.MALCOLM,A.ARASAPPAN,F.BENNETT,S.L.BOGEN,K.CHEN, JRNL AUTH 5 E.JAO,Y.T.LIU,R.G.LOVEY,A.K.SAKSENA,S.VENKATRAMAN, JRNL AUTH 6 V.GIRIJAVALLABHAN,F.G.NJOROGE,V.MADISON JRNL TITL DISCOVERY OF THE HCV NS3/4A PROTEASE INHIBITOR JRNL TITL 2 (1R,5S)-N-[3-AMINO-1-(CYCLOBUTYLMETHYL)-2,3-DIOXOPROPYL]-3- JRNL TITL 3 [2(S)-[[[(1,1-DIMETHYLETHYL)AMINO]CARBONYL]AMINO]-3, JRNL TITL 4 3-DIMETHYL-1-OXOBUTYL]- JRNL TITL 5 6,6-DIMETHYL-3-AZABICYCLO[3.1.0]HEXAN-2(S)-CARBOXAMIDE (SCH JRNL TITL 6 503034) II. KEY STEPS IN STRUCTURE-BASED OPTIMIZATION JRNL REF J.MED.CHEM. V. 50 2310 2007 JRNL REFN ISSN 0022-2623 JRNL PMID 17444623 JRNL DOI 10.1021/JM060173K REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN, REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : -1.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 95.0 REMARK 3 NUMBER OF REFLECTIONS : 46014 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : NULL REMARK 3 R VALUE (WORKING SET) : 0.194 REMARK 3 FREE R VALUE : 0.228 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 2.00 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : NULL REMARK 3 BIN R VALUE (WORKING + TEST SET) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.2356 REMARK 3 BIN FREE R VALUE : 0.2688 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2774 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 4 REMARK 3 SOLVENT ATOMS : 235 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 39.67 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : NULL REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : NULL REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : NULL REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : NULL REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : NULL REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : NULL REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : NULL ; NULL ; NULL REMARK 3 BOND ANGLES : NULL ; NULL ; NULL REMARK 3 TORSION ANGLES : NULL ; NULL ; NULL REMARK 3 TRIGONAL CARBON PLANES : NULL ; NULL ; NULL REMARK 3 GENERAL PLANES : NULL ; NULL ; NULL REMARK 3 ISOTROPIC THERMAL FACTORS : NULL ; NULL ; NULL REMARK 3 BAD NON-BONDED CONTACTS : NULL ; NULL ; NULL REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : NULL ; NULL ; NULL REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : NULL ; NULL ; NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : NULL REMARK 3 BOND ANGLES (DEGREES) : NULL REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : NULL REMARK 3 OTHER TORSION ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2O8M COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 15-DEC-06. REMARK 100 THE DEPOSITION ID IS D_1000040824. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-AUG-97 REMARK 200 TEMPERATURE (KELVIN) : 200 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU RU200 REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : OSMIC MIRRORS REMARK 200 OPTICS : OSMIC MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS IIC REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 46014 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -1.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 94.1 REMARK 200 DATA REDUNDANCY : 3.000 REMARK 200 R MERGE (I) : 0.04200 REMARK 200 R SYM (I) : 0.04890 REMARK 200 FOR THE DATA SET : 19.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.03 REMARK 200 COMPLETENESS FOR SHELL (%) : 58.7 REMARK 200 DATA REDUNDANCY IN SHELL : 1.40 REMARK 200 R MERGE FOR SHELL (I) : 0.57200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: FOURIER SYNTHESIS REMARK 200 SOFTWARE USED: BUSTER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 68.21 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.87 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.25 TO 1.5M NACL, 0.1 M MES, .1M NA/K REMARK 280 PO4, 5MM BETA-MERCAPTOETHANOL, PH 5.6-6.2, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z REMARK 290 6555 -X,-X+Y,-Z REMARK 290 7555 X+2/3,Y+1/3,Z+1/3 REMARK 290 8555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 9555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 10555 Y+2/3,X+1/3,-Z+1/3 REMARK 290 11555 X-Y+2/3,-Y+1/3,-Z+1/3 REMARK 290 12555 -X+2/3,-X+Y+1/3,-Z+1/3 REMARK 290 13555 X+1/3,Y+2/3,Z+2/3 REMARK 290 14555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 15555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 16555 Y+1/3,X+2/3,-Z+2/3 REMARK 290 17555 X-Y+1/3,-Y+2/3,-Z+2/3 REMARK 290 18555 -X+1/3,-X+Y+2/3,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 112.32000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 64.84798 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 25.12000 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 112.32000 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 64.84798 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 25.12000 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 112.32000 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 64.84798 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 25.12000 REMARK 290 SMTRY1 10 -0.500000 0.866025 0.000000 112.32000 REMARK 290 SMTRY2 10 0.866025 0.500000 0.000000 64.84798 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 25.12000 REMARK 290 SMTRY1 11 1.000000 0.000000 0.000000 112.32000 REMARK 290 SMTRY2 11 0.000000 -1.000000 0.000000 64.84798 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 25.12000 REMARK 290 SMTRY1 12 -0.500000 -0.866025 0.000000 112.32000 REMARK 290 SMTRY2 12 -0.866025 0.500000 0.000000 64.84798 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 25.12000 REMARK 290 SMTRY1 13 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 129.69596 REMARK 290 SMTRY3 13 0.000000 0.000000 1.000000 50.24000 REMARK 290 SMTRY1 14 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 14 0.866025 -0.500000 0.000000 129.69596 REMARK 290 SMTRY3 14 0.000000 0.000000 1.000000 50.24000 REMARK 290 SMTRY1 15 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 15 -0.866025 -0.500000 0.000000 129.69596 REMARK 290 SMTRY3 15 0.000000 0.000000 1.000000 50.24000 REMARK 290 SMTRY1 16 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 16 0.866025 0.500000 0.000000 129.69596 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 50.24000 REMARK 290 SMTRY1 17 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 17 0.000000 -1.000000 0.000000 129.69596 REMARK 290 SMTRY3 17 0.000000 0.000000 -1.000000 50.24000 REMARK 290 SMTRY1 18 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 18 -0.866025 0.500000 0.000000 129.69596 REMARK 290 SMTRY3 18 0.000000 0.000000 -1.000000 50.24000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 7220 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 16280 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -150.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -11 REMARK 465 ALA A -10 REMARK 465 SER A -9 REMARK 465 MET A -8 REMARK 465 THR A -7 REMARK 465 GLY A -6 REMARK 465 GLY A -5 REMARK 465 GLN A -4 REMARK 465 SER A 183 REMARK 465 HIS A 184 REMARK 465 HIS A 185 REMARK 465 HIS A 186 REMARK 465 HIS A 187 REMARK 465 HIS A 188 REMARK 465 HIS A 189 REMARK 465 MET B -11 REMARK 465 ALA B -10 REMARK 465 SER B -9 REMARK 465 MET B -8 REMARK 465 THR B -7 REMARK 465 GLY B -6 REMARK 465 GLY B -5 REMARK 465 GLN B -4 REMARK 465 GLN B -3 REMARK 465 MET B -2 REMARK 465 GLY B -1 REMARK 465 ALA B 1 REMARK 465 PRO B 2 REMARK 465 ILE B 3 REMARK 465 THR B 4 REMARK 465 ALA B 5 REMARK 465 TYR B 6 REMARK 465 ALA B 7 REMARK 465 GLN B 8 REMARK 465 GLN B 9 REMARK 465 THR B 10 REMARK 465 ARG B 11 REMARK 465 GLY B 12 REMARK 465 LEU B 13 REMARK 465 LEU B 14 REMARK 465 GLY B 15 REMARK 465 CYS B 16 REMARK 465 ILE B 17 REMARK 465 ILE B 18 REMARK 465 THR B 19 REMARK 465 SER B 20 REMARK 465 LEU B 21 REMARK 465 THR B 22 REMARK 465 GLY B 23 REMARK 465 ARG B 24 REMARK 465 ASP B 25 REMARK 465 LYS B 26 REMARK 465 ASN B 27 REMARK 465 SER B 183 REMARK 465 HIS B 184 REMARK 465 HIS B 185 REMARK 465 HIS B 186 REMARK 465 HIS B 187 REMARK 465 HIS B 188 REMARK 465 HIS B 189 REMARK 465 LYS D 219 REMARK 465 ILE D 238 REMARK 465 PRO D 239 REMARK 465 LYS D 240 REMARK 465 LYS D 241 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLN A -3 N CB CG CD OE1 NE2 REMARK 470 GLY A 182 C O REMARK 470 GLN B 28 CG CD OE1 NE2 REMARK 470 GLY B 182 CA C O REMARK 470 LYS C 219 N CB CG CD CE NZ REMARK 470 ILE D 237 CA C O CB CG1 CG2 CD1 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 CYS C 222 CB CYS C 222 SG -0.097 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 38 -163.51 -113.50 REMARK 500 PHE B 43 -153.63 -152.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA C1001 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 THR A 4 O REMARK 620 2 THR A 4 OG1 78.2 REMARK 620 3 HOH A1022 O 93.5 85.6 REMARK 620 4 LEU C 231 O 88.3 159.6 80.0 REMARK 620 5 GLY C 233 O 160.8 92.3 102.5 104.9 REMARK 620 6 HOH C1002 O 82.7 103.5 169.1 89.7 83.4 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A1002 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ALA A 5 O REMARK 620 2 ALA A 111 O 97.4 REMARK 620 3 HOH A1008 O 86.7 104.6 REMARK 620 4 HOH A1024 O 171.9 90.7 91.1 REMARK 620 5 HOH B 246 O 97.4 94.2 160.1 82.2 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 201 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 97 SG REMARK 620 2 CYS A 99 SG 97.8 REMARK 620 3 CYS A 145 SG 111.2 115.7 REMARK 620 4 HOH A1116 O 115.2 111.6 105.5 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 201 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 97 SG REMARK 620 2 CYS B 99 SG 96.5 REMARK 620 3 CYS B 145 SG 111.9 117.7 REMARK 620 4 HOH B 292 O 110.7 108.6 110.6 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA C 1001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 1002 DBREF 2O8M A 1 181 UNP Q9ELS8 Q9ELS8_9HEPC 1027 1207 DBREF 2O8M B 1 181 UNP Q9ELS8 Q9ELS8_9HEPC 1027 1207 DBREF 2O8M C 221 239 UNP P27958 POLG_HCVH 1677 1695 DBREF 2O8M D 221 239 UNP P27958 POLG_HCVH 1677 1695 SEQADV 2O8M MET A -11 UNP Q9ELS8 EXPRESSION TAG SEQADV 2O8M ALA A -10 UNP Q9ELS8 EXPRESSION TAG SEQADV 2O8M SER A -9 UNP Q9ELS8 EXPRESSION TAG SEQADV 2O8M MET A -8 UNP Q9ELS8 EXPRESSION TAG SEQADV 2O8M THR A -7 UNP Q9ELS8 EXPRESSION TAG SEQADV 2O8M GLY A -6 UNP Q9ELS8 EXPRESSION TAG SEQADV 2O8M GLY A -5 UNP Q9ELS8 EXPRESSION TAG SEQADV 2O8M GLN A -4 UNP Q9ELS8 EXPRESSION TAG SEQADV 2O8M GLN A -3 UNP Q9ELS8 EXPRESSION TAG SEQADV 2O8M MET A -2 UNP Q9ELS8 EXPRESSION TAG SEQADV 2O8M GLY A -1 UNP Q9ELS8 EXPRESSION TAG SEQADV 2O8M ARG A 119 UNP Q9ELS8 GLN 1145 CONFLICT SEQADV 2O8M ALA A 139 UNP Q9ELS8 SER 1165 CONFLICT SEQADV 2O8M GLY A 182 UNP Q9ELS8 EXPRESSION TAG SEQADV 2O8M SER A 183 UNP Q9ELS8 EXPRESSION TAG SEQADV 2O8M HIS A 184 UNP Q9ELS8 EXPRESSION TAG SEQADV 2O8M HIS A 185 UNP Q9ELS8 EXPRESSION TAG SEQADV 2O8M HIS A 186 UNP Q9ELS8 EXPRESSION TAG SEQADV 2O8M HIS A 187 UNP Q9ELS8 EXPRESSION TAG SEQADV 2O8M HIS A 188 UNP Q9ELS8 EXPRESSION TAG SEQADV 2O8M HIS A 189 UNP Q9ELS8 EXPRESSION TAG SEQADV 2O8M MET B -11 UNP Q9ELS8 EXPRESSION TAG SEQADV 2O8M ALA B -10 UNP Q9ELS8 EXPRESSION TAG SEQADV 2O8M SER B -9 UNP Q9ELS8 EXPRESSION TAG SEQADV 2O8M MET B -8 UNP Q9ELS8 EXPRESSION TAG SEQADV 2O8M THR B -7 UNP Q9ELS8 EXPRESSION TAG SEQADV 2O8M GLY B -6 UNP Q9ELS8 EXPRESSION TAG SEQADV 2O8M GLY B -5 UNP Q9ELS8 EXPRESSION TAG SEQADV 2O8M GLN B -4 UNP Q9ELS8 EXPRESSION TAG SEQADV 2O8M GLN B -3 UNP Q9ELS8 EXPRESSION TAG SEQADV 2O8M MET B -2 UNP Q9ELS8 EXPRESSION TAG SEQADV 2O8M GLY B -1 UNP Q9ELS8 EXPRESSION TAG SEQADV 2O8M ARG B 119 UNP Q9ELS8 GLN 1145 CONFLICT SEQADV 2O8M ALA B 139 UNP Q9ELS8 SER 1165 CONFLICT SEQADV 2O8M GLY B 182 UNP Q9ELS8 EXPRESSION TAG SEQADV 2O8M SER B 183 UNP Q9ELS8 EXPRESSION TAG SEQADV 2O8M HIS B 184 UNP Q9ELS8 EXPRESSION TAG SEQADV 2O8M HIS B 185 UNP Q9ELS8 EXPRESSION TAG SEQADV 2O8M HIS B 186 UNP Q9ELS8 EXPRESSION TAG SEQADV 2O8M HIS B 187 UNP Q9ELS8 EXPRESSION TAG SEQADV 2O8M HIS B 188 UNP Q9ELS8 EXPRESSION TAG SEQADV 2O8M HIS B 189 UNP Q9ELS8 EXPRESSION TAG SEQADV 2O8M LYS C 219 UNP P27958 EXPRESSION TAG SEQADV 2O8M LYS C 220 UNP P27958 EXPRESSION TAG SEQADV 2O8M LYS C 240 UNP P27958 EXPRESSION TAG SEQADV 2O8M LYS C 241 UNP P27958 EXPRESSION TAG SEQADV 2O8M LYS D 219 UNP P27958 EXPRESSION TAG SEQADV 2O8M LYS D 220 UNP P27958 EXPRESSION TAG SEQADV 2O8M LYS D 240 UNP P27958 EXPRESSION TAG SEQADV 2O8M LYS D 241 UNP P27958 EXPRESSION TAG SEQRES 1 A 200 MET ALA SER MET THR GLY GLY GLN GLN MET GLY ALA PRO SEQRES 2 A 200 ILE THR ALA TYR ALA GLN GLN THR ARG GLY LEU LEU GLY SEQRES 3 A 200 CYS ILE ILE THR SER LEU THR GLY ARG ASP LYS ASN GLN SEQRES 4 A 200 VAL GLU GLY GLU VAL GLN ILE VAL SER THR ALA THR GLN SEQRES 5 A 200 THR PHE LEU ALA THR CYS ILE ASN GLY VAL CYS TRP THR SEQRES 6 A 200 VAL TYR HIS GLY ALA GLY THR ARG THR ILE ALA SER PRO SEQRES 7 A 200 LYS GLY PRO VAL ILE GLN MET TYR THR ASN VAL ASP GLN SEQRES 8 A 200 ASP LEU VAL GLY TRP PRO ALA PRO GLN GLY SER ARG SER SEQRES 9 A 200 LEU THR PRO CYS THR CYS GLY SER SER ASP LEU TYR LEU SEQRES 10 A 200 VAL THR ARG HIS ALA ASP VAL ILE PRO VAL ARG ARG ARG SEQRES 11 A 200 GLY ASP SER ARG GLY SER LEU LEU SER PRO ARG PRO ILE SEQRES 12 A 200 SER TYR LEU LYS GLY SER ALA GLY GLY PRO LEU LEU CYS SEQRES 13 A 200 PRO ALA GLY HIS ALA VAL GLY LEU PHE ARG ALA ALA VAL SEQRES 14 A 200 CYS THR ARG GLY VAL ALA LYS ALA VAL ASP PHE ILE PRO SEQRES 15 A 200 VAL GLU ASN LEU GLU THR THR MET ARG SER GLY SER HIS SEQRES 16 A 200 HIS HIS HIS HIS HIS SEQRES 1 B 200 MET ALA SER MET THR GLY GLY GLN GLN MET GLY ALA PRO SEQRES 2 B 200 ILE THR ALA TYR ALA GLN GLN THR ARG GLY LEU LEU GLY SEQRES 3 B 200 CYS ILE ILE THR SER LEU THR GLY ARG ASP LYS ASN GLN SEQRES 4 B 200 VAL GLU GLY GLU VAL GLN ILE VAL SER THR ALA THR GLN SEQRES 5 B 200 THR PHE LEU ALA THR CYS ILE ASN GLY VAL CYS TRP THR SEQRES 6 B 200 VAL TYR HIS GLY ALA GLY THR ARG THR ILE ALA SER PRO SEQRES 7 B 200 LYS GLY PRO VAL ILE GLN MET TYR THR ASN VAL ASP GLN SEQRES 8 B 200 ASP LEU VAL GLY TRP PRO ALA PRO GLN GLY SER ARG SER SEQRES 9 B 200 LEU THR PRO CYS THR CYS GLY SER SER ASP LEU TYR LEU SEQRES 10 B 200 VAL THR ARG HIS ALA ASP VAL ILE PRO VAL ARG ARG ARG SEQRES 11 B 200 GLY ASP SER ARG GLY SER LEU LEU SER PRO ARG PRO ILE SEQRES 12 B 200 SER TYR LEU LYS GLY SER ALA GLY GLY PRO LEU LEU CYS SEQRES 13 B 200 PRO ALA GLY HIS ALA VAL GLY LEU PHE ARG ALA ALA VAL SEQRES 14 B 200 CYS THR ARG GLY VAL ALA LYS ALA VAL ASP PHE ILE PRO SEQRES 15 B 200 VAL GLU ASN LEU GLU THR THR MET ARG SER GLY SER HIS SEQRES 16 B 200 HIS HIS HIS HIS HIS SEQRES 1 C 23 LYS LYS GLY CYS VAL VAL ILE VAL GLY ARG ILE VAL LEU SEQRES 2 C 23 SER GLY LYS PRO ALA ILE ILE PRO LYS LYS SEQRES 1 D 23 LYS LYS GLY CYS VAL VAL ILE VAL GLY ARG ILE VAL LEU SEQRES 2 D 23 SER GLY LYS PRO ALA ILE ILE PRO LYS LYS HET ZN A 201 1 HET NA A1002 1 HET ZN B 201 1 HET NA C1001 1 HETNAM ZN ZINC ION HETNAM NA SODIUM ION FORMUL 5 ZN 2(ZN 2+) FORMUL 6 NA 2(NA 1+) FORMUL 9 HOH *235(H2 O) HELIX 1 1 GLY A 12 GLY A 23 1 12 HELIX 2 2 TYR A 56 GLY A 60 1 5 HELIX 3 3 SER A 133 LEU A 135 5 3 HELIX 4 4 VAL A 172 SER A 181 1 10 HELIX 5 5 TYR B 56 GLY B 60 1 5 HELIX 6 6 SER B 133 LEU B 135 5 3 HELIX 7 7 VAL B 172 SER B 181 1 10 SHEET 1 A 7 TYR A 6 GLN A 9 0 SHEET 2 A 7 VAL C 224 VAL C 230 -1 O VAL C 230 N TYR A 6 SHEET 3 A 7 VAL A 33 SER A 37 -1 N VAL A 33 O ILE C 229 SHEET 4 A 7 THR A 42 ILE A 48 -1 O ALA A 45 N GLN A 34 SHEET 5 A 7 VAL A 51 VAL A 55 -1 O TRP A 53 N THR A 46 SHEET 6 A 7 LEU A 82 PRO A 86 -1 O TRP A 85 N CYS A 52 SHEET 7 A 7 TYR A 75 ASN A 77 -1 N ASN A 77 O LEU A 82 SHEET 1 B 7 ASP A 103 VAL A 107 0 SHEET 2 B 7 VAL A 113 ARG A 118 -1 O VAL A 116 N LEU A 104 SHEET 3 B 7 ARG A 123 PRO A 131 -1 O SER A 125 N ARG A 117 SHEET 4 B 7 VAL A 163 PRO A 171 -1 O ALA A 164 N ARG A 130 SHEET 5 B 7 ALA A 150 THR A 160 -1 N ALA A 156 O ASP A 168 SHEET 6 B 7 PRO A 142 LEU A 144 -1 N LEU A 143 O VAL A 151 SHEET 7 B 7 ASP A 103 VAL A 107 -1 N TYR A 105 O LEU A 144 SHEET 1 C 7 TYR B 75 ASN B 77 0 SHEET 2 C 7 LEU B 82 PRO B 86 -1 O LEU B 82 N ASN B 77 SHEET 3 C 7 VAL B 51 VAL B 55 -1 N CYS B 52 O TRP B 85 SHEET 4 C 7 THR B 42 ILE B 48 -1 N THR B 46 O TRP B 53 SHEET 5 C 7 VAL B 33 SER B 37 -1 N VAL B 36 O PHE B 43 SHEET 6 C 7 VAL D 224 VAL D 230 -1 O ILE D 229 N VAL B 33 SHEET 7 C 7 ALA C 236 ILE C 237 -1 N ALA C 236 O VAL D 230 SHEET 1 D 7 ASP B 103 VAL B 107 0 SHEET 2 D 7 VAL B 113 GLY B 120 -1 O VAL B 116 N LEU B 104 SHEET 3 D 7 ARG B 123 PRO B 131 -1 O SER B 125 N ARG B 117 SHEET 4 D 7 VAL B 163 PRO B 171 -1 O ALA B 164 N ARG B 130 SHEET 5 D 7 ALA B 150 THR B 160 -1 N ALA B 156 O ASP B 168 SHEET 6 D 7 PRO B 142 LEU B 144 -1 N LEU B 143 O VAL B 151 SHEET 7 D 7 ASP B 103 VAL B 107 -1 N TYR B 105 O LEU B 144 LINK O THR A 4 NA NA C1001 1555 1555 2.44 LINK OG1 THR A 4 NA NA C1001 1555 1555 2.50 LINK O ALA A 5 NA NA A1002 1555 1555 2.34 LINK SG CYS A 97 ZN ZN A 201 1555 1555 2.15 LINK SG CYS A 99 ZN ZN A 201 1555 1555 2.47 LINK O ALA A 111 NA NA A1002 1555 1555 2.29 LINK SG CYS A 145 ZN ZN A 201 1555 1555 2.41 LINK ZN ZN A 201 O HOH A1116 1555 1555 2.28 LINK NA NA A1002 O HOH A1008 1555 1555 2.39 LINK NA NA A1002 O HOH A1024 1555 1555 2.34 LINK NA NA A1002 O HOH B 246 1555 1555 2.37 LINK O HOH A1022 NA NA C1001 1555 1555 2.41 LINK SG CYS B 97 ZN ZN B 201 1555 1555 2.38 LINK SG CYS B 99 ZN ZN B 201 1555 1555 2.46 LINK SG CYS B 145 ZN ZN B 201 1555 1555 2.22 LINK ZN ZN B 201 O HOH B 292 1555 1555 2.33 LINK O LEU C 231 NA NA C1001 1555 1555 2.43 LINK O GLY C 233 NA NA C1001 1555 1555 2.41 LINK NA NA C1001 O HOH C1002 1555 1555 2.55 CISPEP 1 ALA A 1 PRO A 2 0 -2.44 SITE 1 AC1 4 CYS A 97 CYS A 99 CYS A 145 HOH A1116 SITE 1 AC2 4 CYS B 97 CYS B 99 CYS B 145 HOH B 292 SITE 1 AC3 5 THR A 4 HOH A1022 LEU C 231 GLY C 233 SITE 2 AC3 5 HOH C1002 SITE 1 AC4 5 ALA A 5 ALA A 111 HOH A1008 HOH A1024 SITE 2 AC4 5 HOH B 246 CRYST1 224.640 224.640 75.360 90.00 90.00 120.00 H 3 2 36 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.004452 0.002570 0.000000 0.00000 SCALE2 0.000000 0.005140 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013270 0.00000