HEADER PROTEIN BINDING 12-DEC-06 2O8N TITLE CRYSTAL STRUCTURE OF MOUSE APOLIPOPROTEIN A-I BINDING PROTEIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: APOA-I BINDING PROTEIN; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: APOLIPOPROTEIN A-I BINDING PROTEIN, OSTEOCLAST-LIKE CELL COMPND 5 CDNA, RIKEN FULL-LENGTH ENRICHED LIBRARY, CLONE:I420033L01 COMPND 6 PRODUCT:APOLIPOPROTEIN A-I BINDING PROTEIN, FULL INSERT SEQUENCE; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: HOUSE MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 GENE: APOA1BP, AIBP; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET21A KEYWDS ROSSMANN FOLD, PROTEIN BINDING EXPDTA X-RAY DIFFRACTION AUTHOR I.A.SHUMILIN,K.N.JHA,H.ZHENG,M.CHRUSZCZ,M.CYMBOROWSKI,J.C.HERR, AUTHOR 2 W.MINOR REVDAT 7 13-NOV-24 2O8N 1 REMARK REVDAT 6 27-DEC-23 2O8N 1 REMARK REVDAT 5 13-APR-22 2O8N 1 AUTHOR JRNL REMARK SEQADV REVDAT 5 2 1 LINK REVDAT 4 13-JUL-11 2O8N 1 VERSN REVDAT 3 24-FEB-09 2O8N 1 VERSN REVDAT 2 20-MAY-08 2O8N 1 JRNL REVDAT 1 25-DEC-07 2O8N 0 JRNL AUTH K.N.JHA,I.A.SHUMILIN,L.C.DIGILIO,O.CHERTIHIN,H.ZHENG, JRNL AUTH 2 G.SCHMITZ,P.E.VISCONTI,C.J.FLICKINGER,W.MINOR,J.C.HERR JRNL TITL BIOCHEMICAL AND STRUCTURAL CHARACTERIZATION OF JRNL TITL 2 APOLIPOPROTEIN A-I BINDING PROTEIN, A NOVEL PHOSPHOPROTEIN JRNL TITL 3 WITH A POTENTIAL ROLE IN SPERM CAPACITATION. JRNL REF ENDOCRINOLOGY V. 149 2108 2008 JRNL REFN ISSN 0013-7227 JRNL PMID 18202122 JRNL DOI 10.1210/EN.2007-0582 REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0005 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 80.32 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 96.7 REMARK 3 NUMBER OF REFLECTIONS : 22255 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.171 REMARK 3 R VALUE (WORKING SET) : 0.169 REMARK 3 FREE R VALUE : 0.196 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1191 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.06 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1537 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 91.61 REMARK 3 BIN R VALUE (WORKING SET) : 0.2000 REMARK 3 BIN FREE R VALUE SET COUNT : 78 REMARK 3 BIN FREE R VALUE : 0.2650 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1808 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 6 REMARK 3 SOLVENT ATOMS : 284 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 25.20 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.87000 REMARK 3 B22 (A**2) : -0.87000 REMARK 3 B33 (A**2) : 1.31000 REMARK 3 B12 (A**2) : -0.44000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.136 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.124 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.087 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 6.043 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.961 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.956 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1863 ; 0.017 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2538 ; 1.596 ; 1.997 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 232 ;12.099 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 75 ;39.670 ;24.667 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 301 ;15.314 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 6 ;20.715 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 278 ; 0.114 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1421 ; 0.009 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 895 ; 0.217 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1266 ; 0.317 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 214 ; 0.170 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 51 ; 0.215 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 36 ; 0.271 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1197 ; 0.472 ; 9.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1900 ; 0.728 ; 7.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 753 ; 0.161 ; 5.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 638 ; 0.148 ; 3.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 5 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 26 A 54 REMARK 3 ORIGIN FOR THE GROUP (A): 16.5947 26.0530 93.3729 REMARK 3 T TENSOR REMARK 3 T11: -0.0440 T22: 0.1148 REMARK 3 T33: -0.0209 T12: -0.0268 REMARK 3 T13: 0.0234 T23: -0.0823 REMARK 3 L TENSOR REMARK 3 L11: 2.2413 L22: 5.2014 REMARK 3 L33: 2.4827 L12: 2.9569 REMARK 3 L13: -0.2988 L23: 0.5779 REMARK 3 S TENSOR REMARK 3 S11: 0.2357 S12: -0.3881 S13: 0.2605 REMARK 3 S21: 0.3969 S22: -0.3428 S23: 0.3528 REMARK 3 S31: -0.0588 S32: -0.2999 S33: 0.1071 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 55 A 107 REMARK 3 ORIGIN FOR THE GROUP (A): 19.6648 15.2003 73.3170 REMARK 3 T TENSOR REMARK 3 T11: 0.0688 T22: 0.0634 REMARK 3 T33: 0.0283 T12: -0.0305 REMARK 3 T13: -0.0326 T23: 0.0050 REMARK 3 L TENSOR REMARK 3 L11: 3.5197 L22: 1.3843 REMARK 3 L33: 2.3989 L12: 0.7450 REMARK 3 L13: 1.0357 L23: -0.2035 REMARK 3 S TENSOR REMARK 3 S11: 0.0108 S12: 0.2248 S13: -0.1955 REMARK 3 S21: -0.1207 S22: 0.0699 S23: -0.0450 REMARK 3 S31: 0.2362 S32: 0.1964 S33: -0.0808 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 108 A 158 REMARK 3 ORIGIN FOR THE GROUP (A): 9.9184 19.6367 69.2832 REMARK 3 T TENSOR REMARK 3 T11: 0.0104 T22: 0.0455 REMARK 3 T33: 0.0333 T12: -0.0127 REMARK 3 T13: -0.0642 T23: 0.0337 REMARK 3 L TENSOR REMARK 3 L11: 2.2500 L22: 3.7469 REMARK 3 L33: 2.3094 L12: 1.2095 REMARK 3 L13: -0.0090 L23: -0.0850 REMARK 3 S TENSOR REMARK 3 S11: -0.0479 S12: 0.0831 S13: 0.1867 REMARK 3 S21: -0.2026 S22: -0.0392 S23: 0.3658 REMARK 3 S31: -0.0645 S32: -0.0570 S33: 0.0871 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 159 A 170 REMARK 3 ORIGIN FOR THE GROUP (A): 0.1881 20.7456 82.7433 REMARK 3 T TENSOR REMARK 3 T11: 0.1308 T22: 0.1397 REMARK 3 T33: 0.1253 T12: 0.0110 REMARK 3 T13: 0.0218 T23: -0.0064 REMARK 3 L TENSOR REMARK 3 L11: 18.6543 L22: 1.7769 REMARK 3 L33: 17.1783 L12: 2.0158 REMARK 3 L13: 11.9549 L23: 4.2867 REMARK 3 S TENSOR REMARK 3 S11: -0.5546 S12: -1.5249 S13: 1.3553 REMARK 3 S21: 0.4058 S22: -0.1235 S23: 0.8140 REMARK 3 S31: -1.2542 S32: -1.7164 S33: 0.6781 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 171 A 258 REMARK 3 ORIGIN FOR THE GROUP (A): 15.1488 12.3279 87.6581 REMARK 3 T TENSOR REMARK 3 T11: 0.0614 T22: 0.0781 REMARK 3 T33: -0.0005 T12: -0.0636 REMARK 3 T13: -0.0080 T23: 0.0223 REMARK 3 L TENSOR REMARK 3 L11: 2.4114 L22: 1.2383 REMARK 3 L33: 1.0751 L12: 1.2336 REMARK 3 L13: 0.9734 L23: 0.4213 REMARK 3 S TENSOR REMARK 3 S11: 0.1763 S12: -0.3906 S13: -0.0693 REMARK 3 S21: 0.2247 S22: -0.1670 S23: 0.0453 REMARK 3 S31: 0.1431 S32: -0.1227 S33: -0.0093 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 2O8N COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 14-DEC-06. REMARK 100 THE DEPOSITION ID IS D_1000040825. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 19-OCT-05 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 4.60 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-BM REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97926 REMARK 200 MONOCHROMATOR : MIRRORS REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : SBC-3 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 24177 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 80.320 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : NULL REMARK 200 DATA REDUNDANCY : 13.70 REMARK 200 R MERGE (I) : 0.11100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 56.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.07 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 12.30 REMARK 200 R MERGE FOR SHELL (I) : 0.65300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 8.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: HKL-3000, SHELXD, MLPHARE, DM, SOLVE, RESOLVE, CCP4 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 59.01 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.00 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M SODIUM ACETATE, 1.5 M AMMONIUM REMARK 280 SULFATE, PH 4.6, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K, REMARK 280 PH 4.60 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z REMARK 290 6555 -X,-X+Y,-Z REMARK 290 7555 X+2/3,Y+1/3,Z+1/3 REMARK 290 8555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 9555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 10555 Y+2/3,X+1/3,-Z+1/3 REMARK 290 11555 X-Y+2/3,-Y+1/3,-Z+1/3 REMARK 290 12555 -X+2/3,-X+Y+1/3,-Z+1/3 REMARK 290 13555 X+1/3,Y+2/3,Z+2/3 REMARK 290 14555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 15555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 16555 Y+1/3,X+2/3,-Z+2/3 REMARK 290 17555 X-Y+1/3,-Y+2/3,-Z+2/3 REMARK 290 18555 -X+1/3,-X+Y+2/3,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 62.15600 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 35.88578 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 40.22567 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 62.15600 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 35.88578 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 40.22567 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 62.15600 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 35.88578 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 40.22567 REMARK 290 SMTRY1 10 -0.500000 0.866025 0.000000 62.15600 REMARK 290 SMTRY2 10 0.866025 0.500000 0.000000 35.88578 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 40.22567 REMARK 290 SMTRY1 11 1.000000 0.000000 0.000000 62.15600 REMARK 290 SMTRY2 11 0.000000 -1.000000 0.000000 35.88578 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 40.22567 REMARK 290 SMTRY1 12 -0.500000 -0.866025 0.000000 62.15600 REMARK 290 SMTRY2 12 -0.866025 0.500000 0.000000 35.88578 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 40.22567 REMARK 290 SMTRY1 13 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 71.77157 REMARK 290 SMTRY3 13 0.000000 0.000000 1.000000 80.45133 REMARK 290 SMTRY1 14 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 14 0.866025 -0.500000 0.000000 71.77157 REMARK 290 SMTRY3 14 0.000000 0.000000 1.000000 80.45133 REMARK 290 SMTRY1 15 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 15 -0.866025 -0.500000 0.000000 71.77157 REMARK 290 SMTRY3 15 0.000000 0.000000 1.000000 80.45133 REMARK 290 SMTRY1 16 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 16 0.866025 0.500000 0.000000 71.77157 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 80.45133 REMARK 290 SMTRY1 17 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 17 0.000000 -1.000000 0.000000 71.77157 REMARK 290 SMTRY3 17 0.000000 0.000000 -1.000000 80.45133 REMARK 290 SMTRY1 18 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 18 -0.866025 0.500000 0.000000 71.77157 REMARK 290 SMTRY3 18 0.000000 0.000000 -1.000000 80.45133 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE BIOLOGICAL ASSEMBLY IS A DIMER REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 62.15600 REMARK 350 BIOMT2 2 -0.866025 0.500000 0.000000 35.88578 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 160.90267 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 354 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 375 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 558 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 567 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 568 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 569 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MSE A 0 REMARK 465 GLN A 1 REMARK 465 GLN A 2 REMARK 465 SER A 3 REMARK 465 VAL A 4 REMARK 465 CYS A 5 REMARK 465 ARG A 6 REMARK 465 ALA A 7 REMARK 465 ARG A 8 REMARK 465 PRO A 9 REMARK 465 ILE A 10 REMARK 465 TRP A 11 REMARK 465 TRP A 12 REMARK 465 GLY A 13 REMARK 465 THR A 14 REMARK 465 GLN A 15 REMARK 465 ARG A 16 REMARK 465 ARG A 17 REMARK 465 GLY A 18 REMARK 465 SER A 19 REMARK 465 GLU A 20 REMARK 465 THR A 21 REMARK 465 MSE A 22 REMARK 465 ALA A 23 REMARK 465 GLY A 24 REMARK 465 ALA A 25 REMARK 465 HIS A 259 REMARK 465 HIS A 260 REMARK 465 HIS A 261 REMARK 465 HIS A 262 REMARK 465 HIS A 263 REMARK 465 HIS A 264 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OE1 GLN A 107 O HOH A 584 4556 2.10 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 44 -82.28 -116.00 REMARK 500 PRO A 78 130.35 -13.93 REMARK 500 ASP A 165 104.07 8.16 REMARK 500 ASP A 188 -51.18 78.40 REMARK 500 ASN A 199 89.17 -176.65 REMARK 500 THR A 212 -68.67 78.13 REMARK 500 PHE A 232 4.15 -150.71 REMARK 500 ASP A 250 -122.06 38.85 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 SER A 77 PRO A 78 -76.89 REMARK 500 LYS A 163 GLY A 164 149.25 REMARK 500 GLY A 164 ASP A 165 -132.67 REMARK 500 GLU A 168 PRO A 169 65.27 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 300 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 301 REMARK 999 REMARK 999 SEQUENCE REMARK 999 MSE 0 IS AN INITIATING METHIONINE AND A MODIFIED RESIDUE DBREF 2O8N A 1 258 UNP Q8K4Z3 Q8K4Z3_MOUSE 25 282 SEQADV 2O8N MSE A 0 UNP Q8K4Z3 SEE REMARK 999 SEQADV 2O8N MSE A 22 UNP Q8K4Z3 MET 46 MODIFIED RESIDUE SEQADV 2O8N MSE A 54 UNP Q8K4Z3 MET 78 MODIFIED RESIDUE SEQADV 2O8N MSE A 74 UNP Q8K4Z3 MET 98 MODIFIED RESIDUE SEQADV 2O8N MSE A 131 UNP Q8K4Z3 MET 155 MODIFIED RESIDUE SEQADV 2O8N MSE A 139 UNP Q8K4Z3 MET 163 MODIFIED RESIDUE SEQADV 2O8N MSE A 144 UNP Q8K4Z3 MET 168 MODIFIED RESIDUE SEQADV 2O8N MSE A 145 UNP Q8K4Z3 MET 169 MODIFIED RESIDUE SEQADV 2O8N HIS A 259 UNP Q8K4Z3 EXPRESSION TAG SEQADV 2O8N HIS A 260 UNP Q8K4Z3 EXPRESSION TAG SEQADV 2O8N HIS A 261 UNP Q8K4Z3 EXPRESSION TAG SEQADV 2O8N HIS A 262 UNP Q8K4Z3 EXPRESSION TAG SEQADV 2O8N HIS A 263 UNP Q8K4Z3 EXPRESSION TAG SEQADV 2O8N HIS A 264 UNP Q8K4Z3 EXPRESSION TAG SEQRES 1 A 265 MSE GLN GLN SER VAL CYS ARG ALA ARG PRO ILE TRP TRP SEQRES 2 A 265 GLY THR GLN ARG ARG GLY SER GLU THR MSE ALA GLY ALA SEQRES 3 A 265 ALA VAL LYS TYR LEU SER GLN GLU GLU ALA GLN ALA VAL SEQRES 4 A 265 ASP GLN GLU LEU PHE ASN GLU TYR GLN PHE SER VAL ASP SEQRES 5 A 265 GLN LEU MSE GLU LEU ALA GLY LEU SER CYS ALA THR ALA SEQRES 6 A 265 ILE ALA LYS ALA TYR PRO PRO THR SER MSE SER LYS SER SEQRES 7 A 265 PRO PRO THR VAL LEU VAL ILE CYS GLY PRO GLY ASN ASN SEQRES 8 A 265 GLY GLY ASP GLY LEU VAL CYS ALA ARG HIS LEU LYS LEU SEQRES 9 A 265 PHE GLY TYR GLN PRO THR ILE TYR TYR PRO LYS ARG PRO SEQRES 10 A 265 ASN LYS PRO LEU PHE THR GLY LEU VAL THR GLN CYS GLN SEQRES 11 A 265 LYS MSE ASP ILE PRO PHE LEU GLY GLU MSE PRO PRO GLU SEQRES 12 A 265 PRO MSE MSE VAL ASP GLU LEU TYR GLU LEU VAL VAL ASP SEQRES 13 A 265 ALA ILE PHE GLY PHE SER PHE LYS GLY ASP VAL ARG GLU SEQRES 14 A 265 PRO PHE HIS SER ILE LEU SER VAL LEU SER GLY LEU THR SEQRES 15 A 265 VAL PRO ILE ALA SER ILE ASP ILE PRO SER GLY TRP ASP SEQRES 16 A 265 VAL GLU LYS GLY ASN PRO SER GLY ILE GLN PRO ASP LEU SEQRES 17 A 265 LEU ILE SER LEU THR ALA PRO LYS LYS SER ALA THR HIS SEQRES 18 A 265 PHE THR GLY ARG TYR HIS TYR LEU GLY GLY ARG PHE VAL SEQRES 19 A 265 PRO PRO ALA LEU GLU LYS LYS TYR GLN LEU ASN LEU PRO SEQRES 20 A 265 SER TYR PRO ASP THR GLU CYS VAL TYR ARG LEU GLN HIS SEQRES 21 A 265 HIS HIS HIS HIS HIS MODRES 2O8N MSE A 54 MET SELENOMETHIONINE MODRES 2O8N MSE A 74 MET SELENOMETHIONINE MODRES 2O8N MSE A 131 MET SELENOMETHIONINE MODRES 2O8N MSE A 139 MET SELENOMETHIONINE MODRES 2O8N MSE A 144 MET SELENOMETHIONINE MODRES 2O8N MSE A 145 MET SELENOMETHIONINE HET MSE A 54 8 HET MSE A 74 8 HET MSE A 131 8 HET MSE A 139 8 HET MSE A 144 8 HET MSE A 145 8 HET SO4 A 300 5 HET CL A 301 1 HETNAM MSE SELENOMETHIONINE HETNAM SO4 SULFATE ION HETNAM CL CHLORIDE ION FORMUL 1 MSE 6(C5 H11 N O2 SE) FORMUL 2 SO4 O4 S 2- FORMUL 3 CL CL 1- FORMUL 4 HOH *284(H2 O) HELIX 1 1 SER A 31 ASN A 44 1 14 HELIX 2 2 SER A 49 TYR A 69 1 21 HELIX 3 3 PRO A 70 MSE A 74 5 5 HELIX 4 4 GLY A 88 PHE A 104 1 17 HELIX 5 5 LYS A 118 MSE A 131 1 14 HELIX 6 6 GLU A 142 TYR A 150 1 9 HELIX 7 7 PRO A 169 GLY A 179 1 11 HELIX 8 8 LYS A 215 PHE A 221 5 7 HELIX 9 9 PRO A 234 TYR A 241 1 8 SHEET 1 A 7 GLN A 107 TYR A 111 0 SHEET 2 A 7 THR A 80 CYS A 85 1 N VAL A 83 O THR A 109 SHEET 3 A 7 LEU A 152 ALA A 156 1 O VAL A 154 N LEU A 82 SHEET 4 A 7 ILE A 184 ILE A 187 1 O ALA A 185 N VAL A 153 SHEET 5 A 7 LEU A 207 LEU A 211 1 O LEU A 207 N SER A 186 SHEET 6 A 7 TYR A 225 GLY A 229 1 O GLY A 229 N SER A 210 SHEET 7 A 7 VAL A 254 ARG A 256 -1 O TYR A 255 N LEU A 228 LINK C LEU A 53 N MSE A 54 1555 1555 1.32 LINK C MSE A 54 N GLU A 55 1555 1555 1.34 LINK C SER A 73 N MSE A 74 1555 1555 1.33 LINK C MSE A 74 N SER A 75 1555 1555 1.34 LINK C LYS A 130 N MSE A 131 1555 1555 1.33 LINK C MSE A 131 N ASP A 132 1555 1555 1.34 LINK C GLU A 138 N MSE A 139 1555 1555 1.32 LINK C MSE A 139 N PRO A 140 1555 1555 1.35 LINK C PRO A 143 N MSE A 144 1555 1555 1.33 LINK C MSE A 144 N MSE A 145 1555 1555 1.32 LINK C MSE A 145 N VAL A 146 1555 1555 1.33 SITE 1 AC1 7 ASN A 89 ASN A 90 GLY A 159 SER A 161 SITE 2 AC1 7 PHE A 162 HOH A 327 HOH A 376 SITE 1 AC2 3 ARG A 167 GLU A 168 HOH A 526 CRYST1 124.312 124.312 120.677 90.00 90.00 120.00 H 3 2 18 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008044 0.004644 0.000000 0.00000 SCALE2 0.000000 0.009289 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008287 0.00000