HEADER TRANSFERASE 13-DEC-06 2O9B TITLE CRYSTAL STRUCTURE OF BACTERIOPHYTOCHROME CHROMOPHORE BINDING DOMAIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: BACTERIOPHYTOCHROME; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: CHROMOPHORE BINIDNG DOMAIN; COMPND 5 SYNONYM: PHYTOCHROME-LIKE PROTEIN; COMPND 6 EC: 2.7.13.3; COMPND 7 ENGINEERED: YES; COMPND 8 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: DEINOCOCCUS RADIODURANS; SOURCE 3 ORGANISM_TAXID: 1299; SOURCE 4 GENE: BPHP; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: ROSETTA (DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET21A(+) KEYWDS PHYTOCHROME CHROMOPHORE, FIGURE-OF-EIGHT KNOT, PHYTOCHROMOBILIN, KEYWDS 2 BILIVERDIN, PAS, GAF, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR J.R.WAGNER,J.S.BRUNZELLE,R.D.VIERSTRA,K.T.FOREST REVDAT 9 13-MAR-24 2O9B 1 COMPND SOURCE REVDAT 8 30-AUG-23 2O9B 1 REMARK REVDAT 7 20-OCT-21 2O9B 1 COMPND REMARK SEQADV HETNAM REVDAT 7 2 1 LINK REVDAT 6 18-OCT-17 2O9B 1 REMARK REVDAT 5 28-SEP-11 2O9B 1 FORMUL HETNAM LINK REVDAT 4 13-JUL-11 2O9B 1 VERSN REVDAT 3 24-FEB-09 2O9B 1 VERSN REVDAT 2 08-MAY-07 2O9B 1 JRNL REVDAT 1 06-MAR-07 2O9B 0 JRNL AUTH J.R.WAGNER,J.ZHANG,J.S.BRUNZELLE,R.D.VIERSTRA,K.T.FOREST JRNL TITL HIGH RESOLUTION STRUCTURE OF DEINOCOCCUS BACTERIOPHYTOCHROME JRNL TITL 2 YIELDS NEW INSIGHTS INTO PHYTOCHROME ARCHITECTURE AND JRNL TITL 3 EVOLUTION. JRNL REF J.BIOL.CHEM. V. 282 12298 2007 JRNL REFN ISSN 0021-9258 JRNL PMID 17322301 JRNL DOI 10.1074/JBC.M611824200 REMARK 2 REMARK 2 RESOLUTION. 2.15 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.15 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 23.71 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 96.5 REMARK 3 NUMBER OF REFLECTIONS : 16539 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.191 REMARK 3 R VALUE (WORKING SET) : 0.189 REMARK 3 FREE R VALUE : 0.237 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.300 REMARK 3 FREE R VALUE TEST SET COUNT : 920 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.15 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.21 REMARK 3 REFLECTION IN BIN (WORKING SET) : 966 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 78.86 REMARK 3 BIN R VALUE (WORKING SET) : 0.2180 REMARK 3 BIN FREE R VALUE SET COUNT : 56 REMARK 3 BIN FREE R VALUE : 0.2510 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2394 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 43 REMARK 3 SOLVENT ATOMS : 111 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 32.35 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.15000 REMARK 3 B22 (A**2) : 0.76000 REMARK 3 B33 (A**2) : 0.28000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.12000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.271 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.208 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.137 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 7.609 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.947 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.924 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2554 ; 0.014 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3509 ; 1.806 ; 2.003 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 325 ; 6.274 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 106 ;37.565 ;23.208 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 384 ;14.453 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 20 ;18.190 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 398 ; 0.101 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1976 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1176 ; 0.212 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1731 ; 0.300 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 149 ; 0.153 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 45 ; 0.217 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 8 ; 0.249 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1646 ; 0.796 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2585 ; 1.268 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1076 ; 1.917 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 918 ; 3.003 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 35 A 130 REMARK 3 ORIGIN FOR THE GROUP (A): 0.1088 12.4470 20.3898 REMARK 3 T TENSOR REMARK 3 T11: 0.0122 T22: -0.0123 REMARK 3 T33: 0.0124 T12: 0.0820 REMARK 3 T13: 0.0049 T23: -0.0832 REMARK 3 L TENSOR REMARK 3 L11: 7.0413 L22: 2.4578 REMARK 3 L33: 3.6377 L12: -1.1015 REMARK 3 L13: -0.0619 L23: 0.9105 REMARK 3 S TENSOR REMARK 3 S11: -0.0945 S12: -0.3436 S13: 0.9039 REMARK 3 S21: -0.1305 S22: 0.1109 S23: 0.0203 REMARK 3 S31: -0.6549 S32: -0.2884 S33: -0.0163 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 140 A 220 REMARK 3 RESIDUE RANGE : A 255 A 320 REMARK 3 ORIGIN FOR THE GROUP (A): 15.2739 -7.2962 6.4878 REMARK 3 T TENSOR REMARK 3 T11: -0.1326 T22: -0.1449 REMARK 3 T33: -0.1068 T12: 0.0030 REMARK 3 T13: 0.0205 T23: 0.0113 REMARK 3 L TENSOR REMARK 3 L11: 1.8318 L22: 1.9865 REMARK 3 L33: 3.1432 L12: 0.1739 REMARK 3 L13: 0.5251 L23: 0.7493 REMARK 3 S TENSOR REMARK 3 S11: 0.0332 S12: 0.1742 S13: -0.1075 REMARK 3 S21: -0.0691 S22: 0.0519 S23: 0.0263 REMARK 3 S31: 0.1347 S32: 0.1114 S33: -0.0851 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2O9B COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 26-DEC-06. REMARK 100 THE DEPOSITION ID IS D_1000040849. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 27-OCT-05 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : BRUKER AXS MICROSTAR REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : BRUKER MONTEL MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : BRUKER PROTEUM REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO, HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 17484 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.150 REMARK 200 RESOLUTION RANGE LOW (A) : 24.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.4 REMARK 200 DATA REDUNDANCY : 6.200 REMARK 200 R MERGE (I) : 0.10400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.15 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.23 REMARK 200 COMPLETENESS FOR SHELL (%) : 78.8 REMARK 200 DATA REDUNDANCY IN SHELL : 2.60 REMARK 200 R MERGE FOR SHELL (I) : 0.33300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: PDB ENTRY 1ZTU WITHOUT CHROMOPHORE OR HIS TAG REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.35 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.25 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.095 M SODIUM CITRATE, 19% V/V REMARK 280 ISOPROPANOL, 19% V/V PEG 4000, 5% V/V GLYCEROL, PH 5.6, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 44.75000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 25.75000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 44.75000 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 25.75000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 434 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -14 REMARK 465 ALA A -13 REMARK 465 LEU A -12 REMARK 465 SER A -11 REMARK 465 MET A -10 REMARK 465 THR A -9 REMARK 465 GLY A -8 REMARK 465 GLY A -7 REMARK 465 GLN A -6 REMARK 465 GLN A -5 REMARK 465 MET A -4 REMARK 465 GLY A -3 REMARK 465 ARG A -2 REMARK 465 GLY A -1 REMARK 465 SER A 0 REMARK 465 MET A 1 REMARK 465 SER A 2 REMARK 465 ARG A 3 REMARK 465 ALA A 131 REMARK 465 TRP A 132 REMARK 465 ASP A 133 REMARK 465 SER A 134 REMARK 465 HIS A 323 REMARK 465 HIS A 324 REMARK 465 HIS A 325 REMARK 465 HIS A 326 REMARK 465 HIS A 327 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O GLY A 136 O HOH A 416 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE LBV A 328 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1ZTU RELATED DB: PDB REMARK 900 SAME PROTEIN BUT WITH PROLINE AT POSITION 240 AND SERINE AT REMARK 900 POSITION 307 REMARK 900 RELATED ID: 2O9C RELATED DB: PDB DBREF 2O9B A 1 321 UNP Q9RZA4 BPHY_DEIRA 1 321 SEQADV 2O9B MET A -14 UNP Q9RZA4 CLONING ARTIFACT SEQADV 2O9B ALA A -13 UNP Q9RZA4 CLONING ARTIFACT SEQADV 2O9B LEU A -12 UNP Q9RZA4 CLONING ARTIFACT SEQADV 2O9B SER A -11 UNP Q9RZA4 CLONING ARTIFACT SEQADV 2O9B MET A -10 UNP Q9RZA4 CLONING ARTIFACT SEQADV 2O9B THR A -9 UNP Q9RZA4 CLONING ARTIFACT SEQADV 2O9B GLY A -8 UNP Q9RZA4 CLONING ARTIFACT SEQADV 2O9B GLY A -7 UNP Q9RZA4 CLONING ARTIFACT SEQADV 2O9B GLN A -6 UNP Q9RZA4 CLONING ARTIFACT SEQADV 2O9B GLN A -5 UNP Q9RZA4 CLONING ARTIFACT SEQADV 2O9B MET A -4 UNP Q9RZA4 CLONING ARTIFACT SEQADV 2O9B GLY A -3 UNP Q9RZA4 CLONING ARTIFACT SEQADV 2O9B ARG A -2 UNP Q9RZA4 CLONING ARTIFACT SEQADV 2O9B GLY A -1 UNP Q9RZA4 CLONING ARTIFACT SEQADV 2O9B SER A 0 UNP Q9RZA4 CLONING ARTIFACT SEQADV 2O9B SER A 307 UNP Q9RZA4 TYR 307 ENGINEERED MUTATION SEQADV 2O9B HIS A 322 UNP Q9RZA4 EXPRESSION TAG SEQADV 2O9B HIS A 323 UNP Q9RZA4 EXPRESSION TAG SEQADV 2O9B HIS A 324 UNP Q9RZA4 EXPRESSION TAG SEQADV 2O9B HIS A 325 UNP Q9RZA4 EXPRESSION TAG SEQADV 2O9B HIS A 326 UNP Q9RZA4 EXPRESSION TAG SEQADV 2O9B HIS A 327 UNP Q9RZA4 EXPRESSION TAG SEQRES 1 A 342 MET ALA LEU SER MET THR GLY GLY GLN GLN MET GLY ARG SEQRES 2 A 342 GLY SER MET SER ARG ASP PRO LEU PRO PHE PHE PRO PRO SEQRES 3 A 342 LEU TYR LEU GLY GLY PRO GLU ILE THR THR GLU ASN CYS SEQRES 4 A 342 GLU ARG GLU PRO ILE HIS ILE PRO GLY SER ILE GLN PRO SEQRES 5 A 342 HIS GLY ALA LEU LEU THR ALA ASP GLY HIS SER GLY GLU SEQRES 6 A 342 VAL LEU GLN MET SER LEU ASN ALA ALA THR PHE LEU GLY SEQRES 7 A 342 GLN GLU PRO THR VAL LEU ARG GLY GLN THR LEU ALA ALA SEQRES 8 A 342 LEU LEU PRO GLU GLN TRP PRO ALA LEU GLN ALA ALA LEU SEQRES 9 A 342 PRO PRO GLY CYS PRO ASP ALA LEU GLN TYR ARG ALA THR SEQRES 10 A 342 LEU ASP TRP PRO ALA ALA GLY HIS LEU SER LEU THR VAL SEQRES 11 A 342 HIS ARG VAL GLY GLU LEU LEU ILE LEU GLU PHE GLU PRO SEQRES 12 A 342 THR GLU ALA TRP ASP SER THR GLY PRO HIS ALA LEU ARG SEQRES 13 A 342 ASN ALA MET PHE ALA LEU GLU SER ALA PRO ASN LEU ARG SEQRES 14 A 342 ALA LEU ALA GLU VAL ALA THR GLN THR VAL ARG GLU LEU SEQRES 15 A 342 THR GLY PHE ASP ARG VAL MET LEU TYR LYS PHE ALA PRO SEQRES 16 A 342 ASP ALA THR GLY GLU VAL ILE ALA GLU ALA ARG ARG GLU SEQRES 17 A 342 GLY LEU HIS ALA PHE LEU GLY HIS ARG PHE PRO ALA SER SEQRES 18 A 342 ASP ILE PRO ALA GLN ALA ARG ALA LEU TYR THR ARG HIS SEQRES 19 A 342 LEU LEU ARG LEU THR ALA ASP THR ARG ALA ALA ALA VAL SEQRES 20 A 342 PRO LEU ASP PRO VAL LEU ASN PRO GLN THR ASN ALA PRO SEQRES 21 A 342 THR PRO LEU GLY GLY ALA VAL LEU ARG ALA THR SER PRO SEQRES 22 A 342 MET HIS MET GLN TYR LEU ARG ASN MET GLY VAL GLY SER SEQRES 23 A 342 SER LEU SER VAL SER VAL VAL VAL GLY GLY GLN LEU TRP SEQRES 24 A 342 GLY LEU ILE ALA CYS HIS HIS GLN THR PRO TYR VAL LEU SEQRES 25 A 342 PRO PRO ASP LEU ARG THR THR LEU GLU SER LEU GLY ARG SEQRES 26 A 342 LEU LEU SER LEU GLN VAL GLN VAL LYS GLU ALA HIS HIS SEQRES 27 A 342 HIS HIS HIS HIS HET LBV A 328 43 HETNAM LBV 3-[2-[(Z)-[3-(2-CARBOXYETHYL)-5-[(Z)-(4-ETHENYL-3- HETNAM 2 LBV METHYL-5-OXIDANYLIDENE-PYRROL-2-YLIDENE)METHYL]-4- HETNAM 3 LBV METHYL-PYRROL-1-IUM -2-YLIDENE]METHYL]-5-[(Z)-[(3E)-3- HETNAM 4 LBV ETHYLIDENE-4-METHYL-5-OXIDANYLIDENE-PYRROLIDIN-2- HETNAM 5 LBV YLIDENE]METHYL]-4-METHYL-1H-PYRROL-3- YL]PROPANOIC HETNAM 6 LBV ACID HETSYN LBV 2(R),3(E)- PHYTOCHROMOBILIN FORMUL 2 LBV C33 H37 N4 O6 1+ FORMUL 3 HOH *111(H2 O) HELIX 1 1 PRO A 11 GLY A 15 5 5 HELIX 2 2 ASN A 23 GLU A 27 5 5 HELIX 3 3 ASN A 57 GLY A 63 1 7 HELIX 4 4 GLU A 65 ARG A 70 1 6 HELIX 5 5 THR A 73 LEU A 78 1 6 HELIX 6 6 GLN A 81 LEU A 89 1 9 HELIX 7 7 GLY A 136 ALA A 150 1 15 HELIX 8 8 ASN A 152 GLY A 169 1 18 HELIX 9 9 PRO A 204 ILE A 208 5 5 HELIX 10 10 PRO A 209 THR A 217 1 9 HELIX 11 11 SER A 257 MET A 267 1 11 HELIX 12 12 PRO A 298 ALA A 321 1 24 SHEET 1 A 7 SER A 34 ILE A 35 0 SHEET 2 A 7 VAL A 232 ASP A 235 -1 O VAL A 232 N ILE A 35 SHEET 3 A 7 VAL A 51 SER A 55 -1 N MET A 54 O ASP A 235 SHEET 4 A 7 ALA A 40 ASP A 45 -1 N THR A 43 O LEU A 52 SHEET 5 A 7 LEU A 121 THR A 129 -1 O LEU A 124 N LEU A 42 SHEET 6 A 7 HIS A 110 VAL A 118 -1 N SER A 112 O GLU A 127 SHEET 7 A 7 TYR A 99 LEU A 103 -1 N ALA A 101 O LEU A 113 SHEET 1 B 6 ARG A 202 PHE A 203 0 SHEET 2 B 6 GLY A 184 ARG A 191 -1 N GLY A 184 O PHE A 203 SHEET 3 B 6 ARG A 172 PHE A 178 -1 N VAL A 173 O ALA A 190 SHEET 4 B 6 GLN A 282 HIS A 291 -1 O LEU A 286 N TYR A 176 SHEET 5 B 6 SER A 271 VAL A 279 -1 N LEU A 273 O CYS A 289 SHEET 6 B 6 LEU A 221 THR A 224 -1 N THR A 224 O SER A 272 LINK SG CYS A 24 CBA LBV A 328 1555 1555 1.76 CISPEP 1 ASP A 235 PRO A 236 0 -1.29 SITE 1 AC1 25 CYS A 24 ILE A 29 MET A 174 TYR A 176 SITE 2 AC1 25 PHE A 203 SER A 206 ASP A 207 ILE A 208 SITE 3 AC1 25 PRO A 209 TYR A 216 ARG A 254 THR A 256 SITE 4 AC1 25 SER A 257 MET A 259 HIS A 260 TYR A 263 SITE 5 AC1 25 MET A 267 SER A 272 SER A 274 HIS A 290 SITE 6 AC1 25 HOH A 340 HOH A 376 HOH A 381 HOH A 388 SITE 7 AC1 25 HOH A 392 CRYST1 89.500 51.500 80.800 90.00 116.40 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011177 0.000000 0.005551 0.00000 SCALE2 0.000000 0.019427 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013809 0.00000