HEADER HYDROLASE 15-DEC-06 2OAF TITLE CRYSTAL STRUCTURE OF THIOESTERASE SUPERFAMILY (YP_508616.1) FROM TITLE 2 JANNASCHIA SP. CCS1 AT 2.00 A RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: THIOESTERASE SUPERFAMILY; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: JANNASCHIA SP.; SOURCE 3 ORGANISM_TAXID: 290400; SOURCE 4 STRAIN: CCS1; SOURCE 5 GENE: YP_508616.1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID KEYWDS YP_508616.1, THIOESTERASE SUPERFAMILY, STRUCTURAL GENOMICS, JOINT KEYWDS 2 CENTER FOR STRUCTURAL GENOMICS, JCSG, PROTEIN STRUCTURE INITIATIVE, KEYWDS 3 PSI-2, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) REVDAT 5 27-DEC-23 2OAF 1 REMARK SEQADV LINK REVDAT 4 18-OCT-17 2OAF 1 REMARK REVDAT 3 13-JUL-11 2OAF 1 VERSN REVDAT 2 24-FEB-09 2OAF 1 VERSN REVDAT 1 13-FEB-07 2OAF 0 JRNL AUTH JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) JRNL TITL CRYSTAL STRUCTURE OF THIOESTERASE SUPERFAMILY (YP_508616.1) JRNL TITL 2 FROM JANNASCHIA SP. CCS1 AT 2.00 A RESOLUTION JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD WITH PHASES REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.62 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 25455 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.168 REMARK 3 R VALUE (WORKING SET) : 0.167 REMARK 3 FREE R VALUE : 0.193 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1297 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.05 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1734 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.2320 REMARK 3 BIN FREE R VALUE SET COUNT : 90 REMARK 3 BIN FREE R VALUE : 0.3140 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2284 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 72 REMARK 3 SOLVENT ATOMS : 208 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 27.03 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 29.13 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.05000 REMARK 3 B22 (A**2) : 1.05000 REMARK 3 B33 (A**2) : -1.57000 REMARK 3 B12 (A**2) : 0.52000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.148 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.129 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.094 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 6.835 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.967 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.968 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2483 ; 0.014 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 1678 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3403 ; 1.528 ; 1.950 REMARK 3 BOND ANGLES OTHERS (DEGREES): 4069 ; 0.957 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 301 ; 6.198 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 112 ;30.478 ;22.589 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 350 ;13.297 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 16 ;11.486 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 355 ; 0.093 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2745 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 529 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 483 ; 0.208 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 1710 ; 0.206 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1179 ; 0.185 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 1240 ; 0.087 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 151 ; 0.148 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 14 ; 0.183 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 71 ; 0.269 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 16 ; 0.226 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1510 ; 1.852 ; 3.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 574 ; 0.399 ; 3.000 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2399 ; 2.745 ; 5.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1129 ; 4.989 ; 8.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 996 ; 6.212 ;11.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : 1 REMARK 3 REMARK 3 NCS GROUP NUMBER : 1 REMARK 3 CHAIN NAMES : A B REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 1 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 3 A 143 3 REMARK 3 1 B 3 B 143 3 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 TIGHT POSITIONAL 1 A (A): 807 ; 0.070 ; 0.050 REMARK 3 LOOSE POSITIONAL 1 A (A): 1017 ; 0.380 ; 5.000 REMARK 3 TIGHT THERMAL 1 A (A**2): 807 ; 0.210 ; 0.500 REMARK 3 LOOSE THERMAL 1 A (A**2): 1017 ; 2.070 ;10.000 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 143 REMARK 3 ORIGIN FOR THE GROUP (A): 13.9730 38.0600 10.8820 REMARK 3 T TENSOR REMARK 3 T11: -0.0760 T22: -0.0126 REMARK 3 T33: -0.0204 T12: 0.0030 REMARK 3 T13: 0.0109 T23: -0.0457 REMARK 3 L TENSOR REMARK 3 L11: 0.4158 L22: 0.5368 REMARK 3 L33: 1.9143 L12: -0.0936 REMARK 3 L13: -0.5045 L23: 0.0234 REMARK 3 S TENSOR REMARK 3 S11: 0.0891 S12: 0.0244 S13: -0.0067 REMARK 3 S21: 0.0642 S22: 0.0953 S23: -0.0816 REMARK 3 S31: -0.1309 S32: 0.1383 S33: -0.1843 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 0 B 143 REMARK 3 ORIGIN FOR THE GROUP (A): -1.2200 22.9080 19.0920 REMARK 3 T TENSOR REMARK 3 T11: -0.0287 T22: -0.0713 REMARK 3 T33: -0.0132 T12: 0.0159 REMARK 3 T13: -0.0262 T23: -0.0128 REMARK 3 L TENSOR REMARK 3 L11: 0.9083 L22: 1.0223 REMARK 3 L33: 1.4365 L12: -0.0292 REMARK 3 L13: 0.1216 L23: 0.0110 REMARK 3 S TENSOR REMARK 3 S11: 0.0411 S12: 0.0462 S13: -0.1888 REMARK 3 S21: 0.1849 S22: 0.0268 S23: -0.0294 REMARK 3 S31: 0.1351 S32: 0.0243 S33: -0.0679 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: 1. HYDROGENS HAVE BEEN ADDED IN THE REMARK 3 RIDING POSITIONS. 2. ATOM RECORD CONTAINS RESIDUAL B FACTORS REMARK 3 ONLY. 3. A MET-INHIBITION PROTOCOL WAS USED FOR SELENOMETHIONINE REMARK 3 INCORPORATION DURING PROTEIN EXPRESSION. THE OCCUPANCY OF THE SE REMARK 3 ATOMS IN THE MSE RESIDUES WAS REDUCED TO 0.75 FOR THE REDUCED REMARK 3 SCATTERING POWER DUE TO PARTIAL S-MET INCORPORATION. 4. CHLORIDE, REMARK 3 PEG, CITRATE AND PHOSPHATE ARE MODELED BASED ON THE REMARK 3 CRYSTALLIZATION CONDITIONS. 5. THERE ARE SOME DISORDERED REMARK 3 DENSITIES BETWEEN RESIDUE 17 AND RESIDUE 52 FROM SYMMETRICAL REMARK 3 RELATED DIMER (DIMER/DIMER INTERFACE). PARTS OF DENSITY ARE REMARK 3 INTERPRETED AS PHOSPHATE AND WATER MOLECULES. REMARK 4 REMARK 4 2OAF COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 21-DEC-06. REMARK 100 THE DEPOSITION ID IS D_1000040889. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 05-DEC-06 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.2 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL11-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.91837, 0.97932 REMARK 200 MONOCHROMATOR : SINGLE CRYSTAL SI(111) BENT REMARK 200 MONOCHROMATOR (HORIZONTAL REMARK 200 FOCUSING) REMARK 200 OPTICS : FLAT MIRROR (VERTICAL FOCUSING) REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 325 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA, CCP4 (SCALA) REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 25559 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 29.617 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 10.30 REMARK 200 R MERGE (I) : 0.14200 REMARK 200 R SYM (I) : 0.14200 REMARK 200 FOR THE DATA SET : 14.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.05 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 10.50 REMARK 200 R MERGE FOR SHELL (I) : 0.01100 REMARK 200 R SYM FOR SHELL (I) : 1.12100 REMARK 200 FOR SHELL : 2.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SHELX, SHELXD, SHARP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 52.17 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.57 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 40.0% PEG-300, 0.1M PHOSPHATE CITRATE REMARK 280 PH 4.2, VAPOR DIFFUSION, SITTING DROP, NANODROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 61 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+5/6 REMARK 290 6555 X-Y,X,Z+1/6 REMARK 290 7555 Y,X,-Z+1/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+2/3 REMARK 290 10555 -Y,-X,-Z+5/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+1/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 86.66733 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 173.33467 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 130.00100 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 216.66833 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 43.33367 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 86.66733 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 173.33467 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 216.66833 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 130.00100 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 43.33367 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 THIS ENTRY CONTAINS THE CRYSTALLOGRAPHIC ASYMMETRIC UNIT REMARK 300 WHICH CONSISTS OF 2 CHAIN(S). SEE REMARK 350 FOR REMARK 300 INFORMATION ON GENERATING THE BIOLOGICAL MOLECULE(S). REMARK 300 SIZE EXCLUSION CHROMATOGRAPHY WITH STATIC LIGHT SCATTERING REMARK 300 INDICATES THAT THE TETRAMER IS A BIOLOGICALLY SIGNIFICANT REMARK 300 OLIGOMERIZATION STATE. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA,PQS REMARK 350 TOTAL BURIED SURFACE AREA: 14150 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 21430 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -101.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.500000 0.866025 0.000000 -34.20600 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 59.24653 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 43.33367 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -7 REMARK 465 MSE A -6 REMARK 465 GLN A -5 REMARK 465 GLY A -4 REMARK 465 ALA A -3 REMARK 465 GLY A -2 REMARK 465 ARG A -1 REMARK 465 LEU A 0 REMARK 465 GLY B -7 REMARK 465 MSE B -6 REMARK 465 GLN B -5 REMARK 465 GLY B -4 REMARK 465 ALA B -3 REMARK 465 GLY B -2 REMARK 465 ARG B -1 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LEU B 0 CG CD1 CD2 REMARK 470 ARG B 14 CZ NH1 NH2 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 B 144 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 A 144 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 A 145 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 146 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CIT A 147 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CIT A 148 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PGE B 145 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PGE B 146 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PGE B 147 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 370470 RELATED DB: TARGETDB REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE CONSTRUCT WAS EXPRESSED WITH AN N-TERMINAL REMARK 999 PURIFICATION TAG MGSDKIHHHHHHENLYFQG. THE TAG WAS REMARK 999 REMOVED WITH TEV PROTEASE LEAVING ONLY A GLYCINE (-7), REMARK 999 FOLLOWED BY THE TARGET SEQUENCE. CLONING WAS BASED REMARK 999 ON A DRAFT ANNOTATION OF THE JANNASCHIA SP CCS1 GENOME REMARK 999 AND THE EXPRESSED CONSTRUCT CONTAINS 7 RESIDUES REMARK 999 (-6)MQGAGRL(0) AT THE N-TERMINUS NOT PRESENT IN THE REMARK 999 CURRENT PREDICTED GENE PRODUCT. DBREF 2OAF A 1 143 UNP Q28UM1 Q28UM1_JANSC 1 143 DBREF 2OAF B 1 143 UNP Q28UM1 Q28UM1_JANSC 1 143 SEQADV 2OAF GLY A -7 UNP Q28UM1 SEE REMARK 999 SEQADV 2OAF MSE A -6 UNP Q28UM1 SEE REMARK 999 SEQADV 2OAF GLN A -5 UNP Q28UM1 SEE REMARK 999 SEQADV 2OAF GLY A -4 UNP Q28UM1 SEE REMARK 999 SEQADV 2OAF ALA A -3 UNP Q28UM1 SEE REMARK 999 SEQADV 2OAF GLY A -2 UNP Q28UM1 SEE REMARK 999 SEQADV 2OAF ARG A -1 UNP Q28UM1 SEE REMARK 999 SEQADV 2OAF LEU A 0 UNP Q28UM1 SEE REMARK 999 SEQADV 2OAF MSE A 1 UNP Q28UM1 MET 1 MODIFIED RESIDUE SEQADV 2OAF MSE A 70 UNP Q28UM1 MET 70 MODIFIED RESIDUE SEQADV 2OAF GLY B -7 UNP Q28UM1 SEE REMARK 999 SEQADV 2OAF MSE B -6 UNP Q28UM1 SEE REMARK 999 SEQADV 2OAF GLN B -5 UNP Q28UM1 SEE REMARK 999 SEQADV 2OAF GLY B -4 UNP Q28UM1 SEE REMARK 999 SEQADV 2OAF ALA B -3 UNP Q28UM1 SEE REMARK 999 SEQADV 2OAF GLY B -2 UNP Q28UM1 SEE REMARK 999 SEQADV 2OAF ARG B -1 UNP Q28UM1 SEE REMARK 999 SEQADV 2OAF LEU B 0 UNP Q28UM1 SEE REMARK 999 SEQADV 2OAF MSE B 1 UNP Q28UM1 MET 1 MODIFIED RESIDUE SEQADV 2OAF MSE B 70 UNP Q28UM1 MET 70 MODIFIED RESIDUE SEQRES 1 A 151 GLY MSE GLN GLY ALA GLY ARG LEU MSE GLN PRO ARG PRO SEQRES 2 A 151 ASP SER ALA PHE VAL HIS ASP VAL ARG VAL THR TRP GLY SEQRES 3 A 151 ASP CYS ASP PRO ALA LYS ILE ALA TYR THR GLY HIS LEU SEQRES 4 A 151 PRO ARG PHE ALA LEU GLU ALA ILE ASP ALA TRP TRP SER SEQRES 5 A 151 GLU TYR HIS GLY PRO GLY GLY TRP TYR HIS LEU GLU LEU SEQRES 6 A 151 ASP THR ASN VAL GLY THR PRO PHE VAL ARG LEU GLU MSE SEQRES 7 A 151 ASP PHE LYS SER PRO VAL THR PRO ARG HIS ILE LEU LYS SEQRES 8 A 151 CYS HIS THR TRP PRO THR ARG LEU GLY THR LYS SER ILE SEQRES 9 A 151 THR PHE ARG VAL ASP GLY VAL GLN ASP GLY VAL THR CYS SEQRES 10 A 151 PHE VAL GLY ALA PHE THR CYS VAL PHE THR ILE ALA ASP SEQRES 11 A 151 GLN PHE LYS SER GLN PRO ALA PRO ASP HIS LEU ARG ALA SEQRES 12 A 151 LEU ILE GLU PRO HIS ILE PRO ALA SEQRES 1 B 151 GLY MSE GLN GLY ALA GLY ARG LEU MSE GLN PRO ARG PRO SEQRES 2 B 151 ASP SER ALA PHE VAL HIS ASP VAL ARG VAL THR TRP GLY SEQRES 3 B 151 ASP CYS ASP PRO ALA LYS ILE ALA TYR THR GLY HIS LEU SEQRES 4 B 151 PRO ARG PHE ALA LEU GLU ALA ILE ASP ALA TRP TRP SER SEQRES 5 B 151 GLU TYR HIS GLY PRO GLY GLY TRP TYR HIS LEU GLU LEU SEQRES 6 B 151 ASP THR ASN VAL GLY THR PRO PHE VAL ARG LEU GLU MSE SEQRES 7 B 151 ASP PHE LYS SER PRO VAL THR PRO ARG HIS ILE LEU LYS SEQRES 8 B 151 CYS HIS THR TRP PRO THR ARG LEU GLY THR LYS SER ILE SEQRES 9 B 151 THR PHE ARG VAL ASP GLY VAL GLN ASP GLY VAL THR CYS SEQRES 10 B 151 PHE VAL GLY ALA PHE THR CYS VAL PHE THR ILE ALA ASP SEQRES 11 B 151 GLN PHE LYS SER GLN PRO ALA PRO ASP HIS LEU ARG ALA SEQRES 12 B 151 LEU ILE GLU PRO HIS ILE PRO ALA MODRES 2OAF MSE A 1 MET SELENOMETHIONINE MODRES 2OAF MSE A 70 MET SELENOMETHIONINE MODRES 2OAF MSE B 1 MET SELENOMETHIONINE MODRES 2OAF MSE B 70 MET SELENOMETHIONINE HET MSE A 1 8 HET MSE A 70 8 HET MSE B 1 8 HET MSE B 70 8 HET PO4 A 144 5 HET PO4 A 145 5 HET CL A 146 1 HET CIT A 147 13 HET CIT A 148 13 HET PO4 B 144 5 HET PGE B 145 10 HET PGE B 146 10 HET PGE B 147 10 HETNAM MSE SELENOMETHIONINE HETNAM PO4 PHOSPHATE ION HETNAM CL CHLORIDE ION HETNAM CIT CITRIC ACID HETNAM PGE TRIETHYLENE GLYCOL FORMUL 1 MSE 4(C5 H11 N O2 SE) FORMUL 3 PO4 3(O4 P 3-) FORMUL 5 CL CL 1- FORMUL 6 CIT 2(C6 H8 O7) FORMUL 9 PGE 3(C6 H14 O4) FORMUL 12 HOH *208(H2 O) HELIX 1 1 THR A 16 CYS A 20 5 5 HELIX 2 2 TYR A 27 GLY A 29 5 3 HELIX 3 3 HIS A 30 HIS A 47 1 18 HELIX 4 4 GLY A 50 ASP A 58 1 9 HELIX 5 5 ASP A 122 PHE A 124 5 3 HELIX 6 6 PRO A 130 GLU A 138 1 9 HELIX 7 7 PRO A 139 ILE A 141 5 3 HELIX 8 8 THR B 16 CYS B 20 5 5 HELIX 9 9 TYR B 27 GLY B 29 5 3 HELIX 10 10 HIS B 30 HIS B 47 1 18 HELIX 11 11 GLY B 50 ASP B 58 1 9 HELIX 12 12 ASP B 122 PHE B 124 5 3 HELIX 13 13 PRO B 130 GLU B 138 1 9 HELIX 14 14 PRO B 139 ILE B 141 5 3 SHEET 1 A 5 PHE A 9 VAL A 13 0 SHEET 2 A 5 LEU A 82 LEU A 91 -1 O THR A 86 N PHE A 9 SHEET 3 A 5 SER A 95 GLN A 104 -1 O ARG A 99 N TRP A 87 SHEET 4 A 5 VAL A 107 ILE A 120 -1 O CYS A 109 N GLY A 102 SHEET 5 A 5 VAL A 61 GLY A 62 -1 N GLY A 62 O THR A 119 SHEET 1 B 5 VAL B 61 GLY B 62 0 SHEET 2 B 5 VAL B 107 ILE B 120 -1 O THR B 119 N GLY B 62 SHEET 3 B 5 SER B 95 GLN B 104 -1 N PHE B 98 O PHE B 114 SHEET 4 B 5 LEU B 82 LEU B 91 -1 N TRP B 87 O ARG B 99 SHEET 5 B 5 PHE B 9 VAL B 13 -1 N PHE B 9 O THR B 86 SHEET 1 C 6 LYS B 125 GLN B 127 0 SHEET 2 C 6 VAL B 107 ILE B 120 -1 N ILE B 120 O LYS B 125 SHEET 3 C 6 PHE B 65 PHE B 72 -1 N VAL B 66 O THR B 115 SHEET 4 C 6 PHE A 65 PHE A 72 -1 N LEU A 68 O MSE B 70 SHEET 5 C 6 VAL A 107 ILE A 120 -1 O THR A 115 N VAL A 66 SHEET 6 C 6 SER A 126 GLN A 127 -1 O GLN A 127 N PHE A 118 LINK C MSE A 1 N GLN A 2 1555 1555 1.33 LINK C GLU A 69 N MSE A 70 1555 1555 1.33 LINK C MSE A 70 N ASP A 71 1555 1555 1.33 LINK C LEU B 0 N MSE B 1 1555 1555 1.35 LINK C MSE B 1 N GLN B 2 1555 1555 1.33 LINK C GLU B 69 N MSE B 70 1555 1555 1.34 LINK C MSE B 70 N ASP B 71 1555 1555 1.34 SITE 1 AC1 7 ARG B 90 GLY B 92 THR B 93 LYS B 94 SITE 2 AC1 7 SER B 95 HOH B 214 HOH B 255 SITE 1 AC2 7 GLY A 29 HIS A 30 ARG A 33 HOH A 236 SITE 2 AC2 7 GLY B 29 HIS B 30 ARG B 33 SITE 1 AC3 9 ASP A 21 ILE A 25 ALA A 26 TYR A 27 SITE 2 AC3 9 THR A 28 PRO B 64 PHE B 65 HOH B 184 SITE 3 AC3 9 HOH B 207 SITE 1 AC4 2 HIS A 47 HIS A 132 SITE 1 AC5 10 ARG A 90 GLY A 92 THR A 93 LYS A 94 SITE 2 AC5 10 SER A 95 HOH A 181 HOH A 239 HIS B 80 SITE 3 AC5 10 ASP B 105 HOH B 172 SITE 1 AC6 6 HIS A 80 ILE A 81 LYS A 83 ASP A 105 SITE 2 AC6 6 HOH A 154 HOH A 225 SITE 1 AC7 6 SER A 74 PRO A 75 PHE B 124 SER B 126 SITE 2 AC7 6 HOH B 184 HOH B 226 SITE 1 AC8 6 PHE A 124 PHE B 72 SER B 74 PRO B 75 SITE 2 AC8 6 HOH B 166 HOH B 238 SITE 1 AC9 5 ASP A 131 SER B 7 ALA B 8 TYR B 46 SITE 2 AC9 5 HOH B 185 CRYST1 68.412 68.412 260.002 90.00 90.00 120.00 P 61 2 2 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014620 0.008440 0.000000 0.00000 SCALE2 0.000000 0.016880 0.000000 0.00000 SCALE3 0.000000 0.000000 0.003850 0.00000 HETATM 1 N MSE A 1 21.446 23.600 10.826 1.00 67.15 N HETATM 2 CA MSE A 1 21.280 24.876 10.088 1.00 65.31 C HETATM 3 C MSE A 1 22.703 25.492 9.862 1.00 64.61 C HETATM 4 O MSE A 1 23.724 25.010 10.401 1.00 62.81 O HETATM 5 CB MSE A 1 20.272 25.813 10.832 1.00 62.93 C HETATM 6 CG MSE A 1 18.819 25.181 11.068 1.00 64.03 C HETATM 7 SE MSE A 1 17.121 26.338 11.414 0.75 70.91 SE HETATM 8 CE MSE A 1 15.814 25.123 12.390 1.00 33.98 C