HEADER TOXIN 15-DEC-06 2OAI TITLE THE STRUCTURE OF TRANSPORTER ASSOCIATED DOMAIN CORC_HLYC FROM A TITLE 2 XYLELLA FASTIDIOSA TEMECULA1 HEMOLYSIN. COMPND MOL_ID: 1; COMPND 2 MOLECULE: HEMOLYSIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: CORC_HLYC DOMAIN: RESIDUES 349-439; COMPND 5 ENGINEERED: YES; COMPND 6 OTHER_DETAILS: AUTHORS STATE THAT ALTHOUGH THIS PROTEIN IS A FRAGMENT COMPND 7 OF A PUTATIVE HEMOLYSIN (A TOXIN), THE FUNCTION OF THIS DOMAIN IS COMPND 8 UNKNOWN SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: XYLELLA FASTIDIOSA; SOURCE 3 ORGANISM_TAXID: 183190; SOURCE 4 STRAIN: TEMECULA1; SOURCE 5 ATCC: 700964; SOURCE 6 GENE: TLYC; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PMCSG7 KEYWDS PFAM03471, XYLELLA FASTIDIOSA TEMECULA1, HEMOLYSIN, STRUCTURAL KEYWDS 2 GENOMICS, PSI-2, PROTEIN STRUCTURE INITIATIVE, MIDWEST CENTER FOR KEYWDS 3 STRUCTURAL GENOMICS, MCSG, TOXIN EXPDTA X-RAY DIFFRACTION AUTHOR M.E.CUFF,L.VOLKART,J.ABDULLAH,T.A.BINKOWSKI,A.JOACHIMIAK,MIDWEST AUTHOR 2 CENTER FOR STRUCTURAL GENOMICS (MCSG) REVDAT 4 27-DEC-23 2OAI 1 REMARK SEQADV LINK REVDAT 3 13-JUL-11 2OAI 1 VERSN REVDAT 2 24-FEB-09 2OAI 1 VERSN REVDAT 1 16-JAN-07 2OAI 0 JRNL AUTH M.E.CUFF,L.VOLKART,J.ABDULLAH,T.A.BINKOWSKI,A.JOACHIMIAK JRNL TITL THE STRUCTURE OF TRANSPORTER ASSOCIATED DOMAIN CORC_HLYC JRNL TITL 2 FROM A XYLELLA FASTIDIOSA TEMECULA1 HEMOLYSIN. JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD WITH PHASES REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 31.08 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 3 NUMBER OF REFLECTIONS : 10064 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.176 REMARK 3 R VALUE (WORKING SET) : 0.175 REMARK 3 FREE R VALUE : 0.200 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.800 REMARK 3 FREE R VALUE TEST SET COUNT : 503 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.80 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.85 REMARK 3 REFLECTION IN BIN (WORKING SET) : 686 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 92.08 REMARK 3 BIN R VALUE (WORKING SET) : 0.2520 REMARK 3 BIN FREE R VALUE SET COUNT : 35 REMARK 3 BIN FREE R VALUE : 0.2400 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 644 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 10 REMARK 3 SOLVENT ATOMS : 86 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 30.90 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 52.97 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.105 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.100 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.067 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.906 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.967 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.954 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 682 ; 0.015 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 922 ; 1.630 ; 1.974 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 83 ; 6.903 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 35 ;40.333 ;23.143 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 112 ;14.284 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 7 ;19.772 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 101 ; 0.134 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 520 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 341 ; 0.215 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 474 ; 0.308 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 64 ; 0.130 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): 3 ; 0.038 ; 0.200 REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 26 ; 0.333 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 9 ; 0.121 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): 4 ; 0.173 ; 0.200 REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 412 ; 1.638 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 646 ; 1.808 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 306 ; 2.640 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 275 ; 4.017 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 6 A 90 REMARK 3 ORIGIN FOR THE GROUP (A): 20.7384 33.6651 2.6582 REMARK 3 T TENSOR REMARK 3 T11: -0.3127 T22: -0.2861 REMARK 3 T33: -0.2491 T12: 0.0008 REMARK 3 T13: 0.0308 T23: 0.0530 REMARK 3 L TENSOR REMARK 3 L11: 2.8206 L22: 3.8898 REMARK 3 L33: 3.1894 L12: -1.0535 REMARK 3 L13: -0.4461 L23: -0.2992 REMARK 3 S TENSOR REMARK 3 S11: 0.0753 S12: 0.0155 S13: -0.3113 REMARK 3 S21: 0.0810 S22: -0.3677 S23: -0.1354 REMARK 3 S31: 0.4460 S32: 0.0355 S33: 0.2924 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 2OAI COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 19-DEC-06. REMARK 100 THE DEPOSITION ID IS D_1000040892. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-DEC-06 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97924, 0.97938, 0.98706 REMARK 200 MONOCHROMATOR : SAGITALLY FOCUSED SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 10567 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 31.100 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 200 DATA REDUNDANCY : 8.600 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.04300 REMARK 200 FOR THE DATA SET : 13.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.84 REMARK 200 COMPLETENESS FOR SHELL (%) : 92.7 REMARK 200 DATA REDUNDANCY IN SHELL : 4.00 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.54900 REMARK 200 FOR SHELL : 2.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: HKL-3000, SHELXD, MLPHARE, DM, SOLVE, RESOLVE, CCP4 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.25 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.63 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.05M CACL2, 0.1M BIS-TRIS PH 6.5, 30% REMARK 280 PEG MME550, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 3 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 Z,X,Y REMARK 290 6555 Z,-X,-Y REMARK 290 7555 -Z,-X,Y REMARK 290 8555 -Z,X,-Y REMARK 290 9555 Y,Z,X REMARK 290 10555 -Y,Z,-X REMARK 290 11555 Y,-Z,-X REMARK 290 12555 -Y,-Z,X REMARK 290 13555 X+1/2,Y+1/2,Z+1/2 REMARK 290 14555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 15555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 16555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 17555 Z+1/2,X+1/2,Y+1/2 REMARK 290 18555 Z+1/2,-X+1/2,-Y+1/2 REMARK 290 19555 -Z+1/2,-X+1/2,Y+1/2 REMARK 290 20555 -Z+1/2,X+1/2,-Y+1/2 REMARK 290 21555 Y+1/2,Z+1/2,X+1/2 REMARK 290 22555 -Y+1/2,Z+1/2,-X+1/2 REMARK 290 23555 Y+1/2,-Z+1/2,-X+1/2 REMARK 290 24555 -Y+1/2,-Z+1/2,X+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 6 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 6 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 7 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 9 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 9 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 9 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 10 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 10 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 10 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 12 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 12 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 12 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 13 1.000000 0.000000 0.000000 43.95250 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 43.95250 REMARK 290 SMTRY3 13 0.000000 0.000000 1.000000 43.95250 REMARK 290 SMTRY1 14 -1.000000 0.000000 0.000000 43.95250 REMARK 290 SMTRY2 14 0.000000 -1.000000 0.000000 43.95250 REMARK 290 SMTRY3 14 0.000000 0.000000 1.000000 43.95250 REMARK 290 SMTRY1 15 -1.000000 0.000000 0.000000 43.95250 REMARK 290 SMTRY2 15 0.000000 1.000000 0.000000 43.95250 REMARK 290 SMTRY3 15 0.000000 0.000000 -1.000000 43.95250 REMARK 290 SMTRY1 16 1.000000 0.000000 0.000000 43.95250 REMARK 290 SMTRY2 16 0.000000 -1.000000 0.000000 43.95250 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 43.95250 REMARK 290 SMTRY1 17 0.000000 0.000000 1.000000 43.95250 REMARK 290 SMTRY2 17 1.000000 0.000000 0.000000 43.95250 REMARK 290 SMTRY3 17 0.000000 1.000000 0.000000 43.95250 REMARK 290 SMTRY1 18 0.000000 0.000000 1.000000 43.95250 REMARK 290 SMTRY2 18 -1.000000 0.000000 0.000000 43.95250 REMARK 290 SMTRY3 18 0.000000 -1.000000 0.000000 43.95250 REMARK 290 SMTRY1 19 0.000000 0.000000 -1.000000 43.95250 REMARK 290 SMTRY2 19 -1.000000 0.000000 0.000000 43.95250 REMARK 290 SMTRY3 19 0.000000 1.000000 0.000000 43.95250 REMARK 290 SMTRY1 20 0.000000 0.000000 -1.000000 43.95250 REMARK 290 SMTRY2 20 1.000000 0.000000 0.000000 43.95250 REMARK 290 SMTRY3 20 0.000000 -1.000000 0.000000 43.95250 REMARK 290 SMTRY1 21 0.000000 1.000000 0.000000 43.95250 REMARK 290 SMTRY2 21 0.000000 0.000000 1.000000 43.95250 REMARK 290 SMTRY3 21 1.000000 0.000000 0.000000 43.95250 REMARK 290 SMTRY1 22 0.000000 -1.000000 0.000000 43.95250 REMARK 290 SMTRY2 22 0.000000 0.000000 1.000000 43.95250 REMARK 290 SMTRY3 22 -1.000000 0.000000 0.000000 43.95250 REMARK 290 SMTRY1 23 0.000000 1.000000 0.000000 43.95250 REMARK 290 SMTRY2 23 0.000000 0.000000 -1.000000 43.95250 REMARK 290 SMTRY3 23 -1.000000 0.000000 0.000000 43.95250 REMARK 290 SMTRY1 24 0.000000 -1.000000 0.000000 43.95250 REMARK 290 SMTRY2 24 0.000000 0.000000 -1.000000 43.95250 REMARK 290 SMTRY3 24 1.000000 0.000000 0.000000 43.95250 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 THIS ENTRY CONTAINS THE CRYSTALLOGRAPHIC ASYMMETRIC UNIT REMARK 300 WHICH CONSISTS OF 1 CHAIN(S). AUTHORS STATE THAT SINCE REMARK 300 THIS IS A PROTEIN FRAGMENT, THE BIOLOGICAL UNIT IS REMARK 300 UNKNOWN. THE DIMERIC ASSEMBLY SHOWN IN REMARK 350 IS REMARK 300 PREDICTED BY THE ANALYSIS OF PROTEIN INTERFACES BASED ON REMARK 300 THIS CRYSTAL STRUCTURE. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA,PQS REMARK 350 TOTAL BURIED SURFACE AREA: 2940 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 8130 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -48.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 87.90500 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A -2 REMARK 465 ASN A -1 REMARK 465 ALA A 0 REMARK 465 GLU A 1 REMARK 465 ASN A 2 REMARK 465 THR A 3 REMARK 465 ASP A 4 REMARK 465 GLU A 35 REMARK 465 LEU A 36 REMARK 465 PRO A 37 REMARK 465 ASP A 38 REMARK 465 GLY A 39 REMARK 465 GLU A 40 REMARK 465 GLU A 41 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 LEU A 90 ASN A 91 -149.60 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 101 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 76 OD2 REMARK 620 2 ASP A 76 OD2 86.7 REMARK 620 3 ASP A 78 OD1 64.1 148.6 REMARK 620 4 ASP A 78 OD2 83.7 150.6 42.8 REMARK 620 5 ASP A 78 OD1 158.8 88.6 122.9 90.4 REMARK 620 6 ASP A 78 OD2 143.7 116.0 85.5 87.0 55.7 REMARK 620 7 ASP A 83 OD2 82.5 80.8 105.2 70.4 76.3 126.7 REMARK 620 8 ASP A 83 OD2 70.0 96.0 64.3 106.6 131.1 79.3 152.5 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 102 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 76 OD1 REMARK 620 2 ASP A 76 OD2 46.1 REMARK 620 3 LEU A 77 O 82.1 79.2 REMARK 620 4 ASP A 78 OD1 113.9 68.9 74.8 REMARK 620 5 ASP A 83 OD2 84.9 67.4 143.7 79.9 REMARK 620 6 HOH A 203 O 81.2 116.6 133.3 151.2 77.1 REMARK 620 7 HOH A 207 O 101.3 137.0 67.1 122.9 149.0 74.0 REMARK 620 8 HOH A 216 O 160.0 139.2 116.9 79.3 82.7 80.8 81.9 REMARK 620 N 1 2 3 4 5 6 7 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 102 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 202 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: APC86234.2 RELATED DB: TARGETDB DBREF 2OAI A 1 91 UNP Q87DZ3 Q87DZ3_XYLFT 349 439 SEQADV 2OAI SER A -2 UNP Q87DZ3 CLONING ARTIFACT SEQADV 2OAI ASN A -1 UNP Q87DZ3 CLONING ARTIFACT SEQADV 2OAI ALA A 0 UNP Q87DZ3 CLONING ARTIFACT SEQADV 2OAI MSE A 9 UNP Q87DZ3 MET 357 MODIFIED RESIDUE SEQADV 2OAI MSE A 50 UNP Q87DZ3 MET 398 MODIFIED RESIDUE SEQADV 2OAI MLY A 84 UNP Q87DZ3 LYS 432 MODIFIED RESIDUE SEQRES 1 A 94 SER ASN ALA GLU ASN THR ASP GLU ASP ALA LEU MSE VAL SEQRES 2 A 94 THR ARG GLU ASP GLY SER PHE LEU ILE ASP GLY THR LEU SEQRES 3 A 94 PRO ILE GLU GLU LEU ARG GLU VAL LEU GLY ALA GLU LEU SEQRES 4 A 94 PRO ASP GLY GLU GLU ASN ASN TYR HIS THR LEU ALA GLY SEQRES 5 A 94 MSE CYS ILE SER TYR PHE GLY ARG ILE PRO HIS VAL GLY SEQRES 6 A 94 GLU TYR PHE ASP TRP ALA GLY TRP ARG ILE GLU ILE VAL SEQRES 7 A 94 ASP LEU ASP GLY ALA ARG ILE ASP MLY LEU LEU LEU GLN SEQRES 8 A 94 ARG LEU ASN MODRES 2OAI MSE A 9 MET SELENOMETHIONINE MODRES 2OAI MSE A 50 MET SELENOMETHIONINE MODRES 2OAI MLY A 84 LYS N-DIMETHYL-LYSINE HET MSE A 9 8 HET MSE A 50 8 HET MLY A 84 11 HET CA A 101 1 HET CA A 102 1 HET EDO A 201 4 HET EDO A 202 4 HETNAM MSE SELENOMETHIONINE HETNAM MLY N-DIMETHYL-LYSINE HETNAM CA CALCIUM ION HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 1 MSE 2(C5 H11 N O2 SE) FORMUL 1 MLY C8 H18 N2 O2 FORMUL 2 CA 2(CA 2+) FORMUL 4 EDO 2(C2 H6 O2) FORMUL 6 HOH *86(H2 O) HELIX 1 1 PRO A 24 GLY A 33 1 10 HELIX 2 2 THR A 46 GLY A 56 1 11 SHEET 1 A 5 MSE A 9 THR A 11 0 SHEET 2 A 5 PHE A 17 ASP A 20 -1 O LEU A 18 N VAL A 10 SHEET 3 A 5 ARG A 81 ARG A 89 -1 O LEU A 87 N PHE A 17 SHEET 4 A 5 TRP A 70 ASP A 78 -1 N ARG A 71 O GLN A 88 SHEET 5 A 5 TYR A 64 TRP A 67 -1 N PHE A 65 O ILE A 72 LINK C LEU A 8 N MSE A 9 1555 1555 1.33 LINK C MSE A 9 N VAL A 10 1555 1555 1.33 LINK C GLY A 49 N MSE A 50 1555 1555 1.33 LINK C MSE A 50 N CYS A 51 1555 1555 1.33 LINK C ASP A 83 N MLY A 84 1555 1555 1.34 LINK C MLY A 84 N LEU A 85 1555 1555 1.33 LINK OD2 ASP A 76 CA CA A 101 1555 1555 2.66 LINK OD2 ASP A 76 CA CA A 101 4565 1555 2.03 LINK OD1 ASP A 76 CA CA A 102 1555 1555 2.38 LINK OD2 ASP A 76 CA CA A 102 1555 1555 2.97 LINK O LEU A 77 CA CA A 102 1555 1555 2.40 LINK OD1 ASP A 78 CA CA A 101 1555 1555 3.08 LINK OD2 ASP A 78 CA CA A 101 1555 1555 2.83 LINK OD1 ASP A 78 CA CA A 101 4565 1555 2.36 LINK OD2 ASP A 78 CA CA A 101 4565 1555 2.29 LINK OD1 ASP A 78 CA CA A 102 1555 1555 2.38 LINK OD2 ASP A 83 CA CA A 101 1555 1555 2.57 LINK OD2 ASP A 83 CA CA A 101 4565 1555 2.58 LINK OD2 ASP A 83 CA CA A 102 4565 1555 2.36 LINK CA CA A 102 O HOH A 203 1555 4565 2.45 LINK CA CA A 102 O HOH A 207 1555 1555 2.55 LINK CA CA A 102 O HOH A 216 1555 4565 2.48 SITE 1 AC1 4 ASP A 76 ASP A 78 ASP A 83 CA A 102 SITE 1 AC2 8 ASP A 76 LEU A 77 ASP A 78 ASP A 83 SITE 2 AC2 8 CA A 101 HOH A 203 HOH A 207 HOH A 216 SITE 1 AC3 2 ARG A 12 GLN A 88 SITE 1 AC4 8 ASP A 20 GLY A 21 THR A 22 ARG A 81 SITE 2 AC4 8 ILE A 82 ASP A 83 HOH A 209 HOH A 266 CRYST1 87.905 87.905 87.905 90.00 90.00 90.00 I 2 3 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011376 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011376 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011376 0.00000