HEADER SUGAR BINDING PROTEIN 18-DEC-06 2OB5 TITLE CRYSTAL STRUCTURE OF PROTEIN ATU2016, PUTATIVE SUGAR BINDING PROTEIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: HYPOTHETICAL PROTEIN ATU2016; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: AGR_C_3656P; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: AGROBACTERIUM TUMEFACIENS STR.; SOURCE 3 ORGANISM_TAXID: 176299; SOURCE 4 STRAIN: C58; SOURCE 5 ATCC: 33970; SOURCE 6 GENE: AGR_C_3656, ATU2016; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: BL21(DE3) DERIVATIVE; SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PET DERIVATIVE KEYWDS AGROBACTERIUM TUMEFACIENS, PUTAVITE SUGAR BINDING PROTEIN, STRUCTURAL KEYWDS 2 GENOMICS, PSI-2, PROTEIN STRUCTURE INITIATIVE, MIDWEST CENTER FOR KEYWDS 3 STRUCTURAL GENOMICS, MCSG, SUGAR BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR C.CHANG,X.XU,J.GU,A.SAVCHENKO,A.M.EDWARDS,A.JOACHIMIAK,MIDWEST CENTER AUTHOR 2 FOR STRUCTURAL GENOMICS (MCSG) REVDAT 5 27-DEC-23 2OB5 1 SEQADV LINK REVDAT 4 13-JUL-11 2OB5 1 VERSN REVDAT 3 24-FEB-09 2OB5 1 VERSN REVDAT 2 14-AUG-07 2OB5 1 AUTHOR JRNL REVDAT 1 16-JAN-07 2OB5 0 JRNL AUTH C.CHANG,X.XU,J.GU,A.SAVCHENKO,A.M.EDWARDS,A.JOACHIMIAK JRNL TITL CRYSTAL STRUCTURE OF PROTEIN ATU2016, PUTATIVE SUGAR BINDING JRNL TITL 2 PROTEIN JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 47.35 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 3 NUMBER OF REFLECTIONS : 18648 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.179 REMARK 3 R VALUE (WORKING SET) : 0.177 REMARK 3 FREE R VALUE : 0.206 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1008 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.60 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.64 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1290 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 97.45 REMARK 3 BIN R VALUE (WORKING SET) : 0.2180 REMARK 3 BIN FREE R VALUE SET COUNT : 88 REMARK 3 BIN FREE R VALUE : 0.3030 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1148 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 133 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 18.68 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.66000 REMARK 3 B22 (A**2) : -0.66000 REMARK 3 B33 (A**2) : 1.33000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.091 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.089 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.057 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.206 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.961 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.955 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1223 ; 0.014 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 1672 ; 1.453 ; 1.974 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 166 ; 5.744 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 53 ;35.645 ;24.528 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 210 ;12.958 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 7 ;20.531 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 193 ; 0.100 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 933 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 590 ; 0.234 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 867 ; 0.310 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 103 ; 0.160 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 70 ; 0.241 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 21 ; 0.192 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 793 ; 1.208 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1261 ; 1.579 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 472 ; 2.675 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 403 ; 3.730 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A -2 A 21 REMARK 3 ORIGIN FOR THE GROUP (A): 3.2380 30.2780 22.5780 REMARK 3 T TENSOR REMARK 3 T11: -0.0345 T22: -0.0006 REMARK 3 T33: -0.0156 T12: 0.0385 REMARK 3 T13: 0.0021 T23: 0.0133 REMARK 3 L TENSOR REMARK 3 L11: 3.5645 L22: 2.8685 REMARK 3 L33: 1.8078 L12: -0.5283 REMARK 3 L13: -0.0148 L23: -0.7704 REMARK 3 S TENSOR REMARK 3 S11: -0.0236 S12: -0.0669 S13: -0.1163 REMARK 3 S21: 0.2306 S22: 0.0510 S23: -0.0739 REMARK 3 S31: 0.1236 S32: -0.0546 S33: -0.0274 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 22 A 68 REMARK 3 RESIDUE RANGE : A 124 A 146 REMARK 3 ORIGIN FOR THE GROUP (A): 6.6930 17.5070 18.6110 REMARK 3 T TENSOR REMARK 3 T11: -0.0385 T22: -0.0011 REMARK 3 T33: 0.0026 T12: 0.0089 REMARK 3 T13: -0.0066 T23: -0.0085 REMARK 3 L TENSOR REMARK 3 L11: 2.3113 L22: 1.5557 REMARK 3 L33: 0.0179 L12: -1.0515 REMARK 3 L13: 0.0137 L23: -0.0694 REMARK 3 S TENSOR REMARK 3 S11: 0.0630 S12: 0.0226 S13: -0.1117 REMARK 3 S21: 0.0536 S22: -0.0272 S23: -0.0727 REMARK 3 S31: 0.0855 S32: -0.0084 S33: -0.0358 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 69 A 123 REMARK 3 ORIGIN FOR THE GROUP (A): 5.2890 7.4480 24.7380 REMARK 3 T TENSOR REMARK 3 T11: 0.0176 T22: -0.0055 REMARK 3 T33: 0.0477 T12: -0.0210 REMARK 3 T13: -0.0014 T23: -0.0184 REMARK 3 L TENSOR REMARK 3 L11: 1.2089 L22: 2.6688 REMARK 3 L33: 1.2304 L12: -1.3683 REMARK 3 L13: 0.5471 L23: -1.4574 REMARK 3 S TENSOR REMARK 3 S11: -0.0164 S12: 0.1174 S13: -0.2256 REMARK 3 S21: -0.0425 S22: 0.0025 S23: 0.0155 REMARK 3 S31: 0.3089 S32: 0.0263 S33: 0.0139 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 2OB5 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 20-DEC-06. REMARK 100 THE DEPOSITION ID IS D_1000040914. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 06-OCT-06 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-BM REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97904 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : CUSTOM-MADE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 19728 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.600 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 13.00 REMARK 200 R MERGE (I) : 0.09500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 35.2900 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.66 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.2 REMARK 200 DATA REDUNDANCY IN SHELL : 11.60 REMARK 200 R MERGE FOR SHELL (I) : 0.57800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.620 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: HKL-3000 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 41.68 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.11 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M HEPES, 0.2M AMMONIUM SULFATE, 25% REMARK 280 PEG3350, PH 7.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 42 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -Y+1/2,X+1/2,Z+1/2 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/2 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 31.66100 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 31.66100 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 35.69100 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 31.66100 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 31.66100 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 35.69100 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 31.66100 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 31.66100 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 35.69100 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 31.66100 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 31.66100 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 35.69100 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 63.32200 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 281 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 PRO A 148 REMARK 465 LYS A 149 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 MSE A 82 CG SE CE REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD1 ASP A 24 O HOH A 218 1.74 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 N TYR A -3 O HOH A 280 5555 2.06 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 52 -10.39 73.34 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: APC5878 RELATED DB: TARGETDB DBREF 2OB5 A 1 149 UNP Q8UDV3 Q8UDV3_AGRT5 1 149 SEQADV 2OB5 TYR A -3 UNP Q8UDV3 CLONING ARTIFACT SEQADV 2OB5 PHE A -2 UNP Q8UDV3 CLONING ARTIFACT SEQADV 2OB5 GLN A -1 UNP Q8UDV3 CLONING ARTIFACT SEQADV 2OB5 GLY A 0 UNP Q8UDV3 CLONING ARTIFACT SEQADV 2OB5 MSE A 1 UNP Q8UDV3 MET 1 MODIFIED RESIDUE SEQADV 2OB5 MSE A 20 UNP Q8UDV3 MET 20 MODIFIED RESIDUE SEQADV 2OB5 MSE A 59 UNP Q8UDV3 MET 59 MODIFIED RESIDUE SEQADV 2OB5 MSE A 79 UNP Q8UDV3 MET 79 MODIFIED RESIDUE SEQADV 2OB5 MSE A 82 UNP Q8UDV3 MET 82 MODIFIED RESIDUE SEQADV 2OB5 MSE A 109 UNP Q8UDV3 MET 109 MODIFIED RESIDUE SEQRES 1 A 153 TYR PHE GLN GLY MSE LEU LYS ASN ILE ASP PRO ALA LEU SEQRES 2 A 153 ASN ALA ASP VAL LEU HIS ALA LEU ARG ALA MSE GLY HIS SEQRES 3 A 153 GLY ASP THR LEU VAL ILE SER ASP THR ASN PHE PRO SER SEQRES 4 A 153 ASP SER VAL ALA ARG GLN THR THR VAL GLY LYS VAL LEU SEQRES 5 A 153 HIS ILE ASP ASN VAL SER ALA ALA ARG ALA MSE LYS ALA SEQRES 6 A 153 ILE LEU SER VAL LEU PRO LEU ASP THR PRO LEU GLN PRO SEQRES 7 A 153 SER VAL GLY ARG MSE GLU VAL MSE GLY ALA PRO ASP GLN SEQRES 8 A 153 LEU GLU PRO VAL GLN VAL GLU VAL GLN GLN GLU ILE ASP SEQRES 9 A 153 ALA ALA GLU GLY LYS SER ALA PRO MSE TYR GLY ILE GLU SEQRES 10 A 153 ARG PHE ALA PHE TYR GLU LYS ALA LYS GLN ALA TYR CYS SEQRES 11 A 153 VAL ILE THR THR GLY GLU THR ARG PHE TYR GLY CYS PHE SEQRES 12 A 153 LEU LEU THR LYS GLY VAL ILE PRO PRO LYS MODRES 2OB5 MSE A 1 MET SELENOMETHIONINE MODRES 2OB5 MSE A 20 MET SELENOMETHIONINE MODRES 2OB5 MSE A 59 MET SELENOMETHIONINE MODRES 2OB5 MSE A 79 MET SELENOMETHIONINE MODRES 2OB5 MSE A 82 MET SELENOMETHIONINE MODRES 2OB5 MSE A 109 MET SELENOMETHIONINE HET MSE A 1 8 HET MSE A 20 8 HET MSE A 59 8 HET MSE A 79 13 HET MSE A 82 5 HET MSE A 109 8 HETNAM MSE SELENOMETHIONINE FORMUL 1 MSE 6(C5 H11 N O2 SE) FORMUL 2 HOH *133(H2 O) HELIX 1 1 ASN A 10 MSE A 20 1 11 HELIX 2 2 PRO A 34 ARG A 40 1 7 HELIX 3 3 SER A 54 SER A 64 1 11 HELIX 4 4 GLU A 89 GLY A 104 1 16 HELIX 5 5 GLU A 113 GLN A 123 1 11 SHEET 1 A 6 LEU A 48 HIS A 49 0 SHEET 2 A 6 CYS A 126 THR A 129 1 O THR A 129 N LEU A 48 SHEET 3 A 6 THR A 25 SER A 29 1 N VAL A 27 O ILE A 128 SHEET 4 A 6 PHE A 139 THR A 142 -1 O LEU A 141 N LEU A 26 SHEET 5 A 6 VAL A 76 MSE A 79 -1 N GLY A 77 O LEU A 140 SHEET 6 A 6 TYR A 110 ILE A 112 1 O TYR A 110 N ARG A 78 LINK C GLY A 0 N MSE A 1 1555 1555 1.34 LINK C MSE A 1 N LEU A 2 1555 1555 1.34 LINK C ALA A 19 N MSE A 20 1555 1555 1.33 LINK C MSE A 20 N GLY A 21 1555 1555 1.33 LINK C ALA A 58 N MSE A 59 1555 1555 1.33 LINK C MSE A 59 N LYS A 60 1555 1555 1.33 LINK C ARG A 78 N MSE A 79 1555 1555 1.32 LINK C MSE A 79 N GLU A 80 1555 1555 1.32 LINK C VAL A 81 N MSE A 82 1555 1555 1.33 LINK C MSE A 82 N GLY A 83 1555 1555 1.34 LINK C PRO A 108 N MSE A 109 1555 1555 1.33 LINK C MSE A 109 N TYR A 110 1555 1555 1.33 CRYST1 63.322 63.322 71.382 90.00 90.00 90.00 P 42 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015792 0.000000 0.000000 0.00000 SCALE2 0.000000 0.015792 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014009 0.00000