data_2OBZ # _entry.id 2OBZ # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.383 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 2OBZ pdb_00002obz 10.2210/pdb2obz/pdb NDB ZD0023 ? ? RCSB RCSB040944 ? ? WWPDB D_1000040944 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2007-12-25 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2023-12-27 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Data collection' 3 3 'Structure model' 'Database references' 4 3 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' chem_comp_atom 2 3 'Structure model' chem_comp_bond 3 3 'Structure model' database_2 4 3 'Structure model' struct_conn # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_database_2.pdbx_DOI' 2 3 'Structure model' '_database_2.pdbx_database_accession' 3 3 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 2OBZ _pdbx_database_status.recvd_initial_deposition_date 2006-12-20 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Schiltz, M.' 1 'Sanishvili, R.' 2 # _citation.id primary _citation.title ;Polarisation-dependence of anomalous scattering in brominated DNA and RNA molecules, and importance of crystal orientation in SAD and MAD phasing ; _citation.journal_abbrev 'To be Published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Sanishvili, R.' 1 ? primary 'Besnard, C.' 2 ? primary 'Camus, F.' 3 ? primary 'Fleurant, M.' 4 ? primary 'Pattison, P.' 5 ? primary 'Bricongne, G.' 6 ? primary 'Schiltz, M.' 7 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn "5'-D(*CP*GP*CP*GP*(BRU)P*G)-3'" 1890.086 2 ? ? ? 'Brominated Z-DNA duplex' 2 water nat water 18.015 54 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type polydeoxyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code '(DC)(DG)(DC)(DG)(BRU)(DG)' _entity_poly.pdbx_seq_one_letter_code_can CGCGUG _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier ? # _pdbx_entity_nonpoly.entity_id 2 _pdbx_entity_nonpoly.name water _pdbx_entity_nonpoly.comp_id HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DC n 1 2 DG n 1 3 DC n 1 4 DG n 1 5 BRU n 1 6 DG n # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight BRU 'DNA linking' n "5-BROMO-2'-DEOXYURIDINE-5'-MONOPHOSPHATE" ? 'C9 H12 Br N2 O8 P' 387.078 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 HOH non-polymer . WATER ? 'H2 O' 18.015 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DC 1 1 1 DC C A . n A 1 2 DG 2 2 2 DG G A . n A 1 3 DC 3 3 3 DC C A . n A 1 4 DG 4 4 4 DG G A . n A 1 5 BRU 5 5 5 BRU BRU A . n A 1 6 DG 6 6 6 DG G A . n B 1 1 DC 1 7 7 DC C B . n B 1 2 DG 2 8 8 DG G B . n B 1 3 DC 3 9 9 DC C B . n B 1 4 DG 4 10 10 DG G B . n B 1 5 BRU 5 11 11 BRU BRU B . n B 1 6 DG 6 12 12 DG G B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 HOH 1 7 102 HOH HOH A . C 2 HOH 2 8 105 HOH HOH A . C 2 HOH 3 9 106 HOH HOH A . C 2 HOH 4 10 108 HOH HOH A . C 2 HOH 5 11 109 HOH HOH A . C 2 HOH 6 12 110 HOH HOH A . C 2 HOH 7 13 112 HOH HOH A . C 2 HOH 8 14 115 HOH HOH A . C 2 HOH 9 15 120 HOH HOH A . C 2 HOH 10 16 121 HOH HOH A . C 2 HOH 11 17 123 HOH HOH A . C 2 HOH 12 18 126 HOH HOH A . C 2 HOH 13 19 129 HOH HOH A . C 2 HOH 14 20 130 HOH HOH A . C 2 HOH 15 21 135 HOH HOH A . C 2 HOH 16 22 136 HOH HOH A . C 2 HOH 17 23 142 HOH HOH A . C 2 HOH 18 24 144 HOH HOH A . C 2 HOH 19 25 149 HOH HOH A . C 2 HOH 20 26 151 HOH HOH A . D 2 HOH 1 13 101 HOH HOH B . D 2 HOH 2 14 103 HOH HOH B . D 2 HOH 3 15 104 HOH HOH B . D 2 HOH 4 16 107 HOH HOH B . D 2 HOH 5 17 111 HOH HOH B . D 2 HOH 6 18 113 HOH HOH B . D 2 HOH 7 19 114 HOH HOH B . D 2 HOH 8 20 116 HOH HOH B . D 2 HOH 9 21 117 HOH HOH B . D 2 HOH 10 22 118 HOH HOH B . D 2 HOH 11 23 119 HOH HOH B . D 2 HOH 12 24 122 HOH HOH B . D 2 HOH 13 25 124 HOH HOH B . D 2 HOH 14 26 125 HOH HOH B . D 2 HOH 15 27 127 HOH HOH B . D 2 HOH 16 28 128 HOH HOH B . D 2 HOH 17 29 131 HOH HOH B . D 2 HOH 18 30 132 HOH HOH B . D 2 HOH 19 31 133 HOH HOH B . D 2 HOH 20 32 134 HOH HOH B . D 2 HOH 21 33 137 HOH HOH B . D 2 HOH 22 34 138 HOH HOH B . D 2 HOH 23 35 139 HOH HOH B . D 2 HOH 24 36 140 HOH HOH B . D 2 HOH 25 37 141 HOH HOH B . D 2 HOH 26 38 143 HOH HOH B . D 2 HOH 27 39 145 HOH HOH B . D 2 HOH 28 40 146 HOH HOH B . D 2 HOH 29 41 147 HOH HOH B . D 2 HOH 30 42 148 HOH HOH B . D 2 HOH 31 43 150 HOH HOH B . D 2 HOH 32 44 152 HOH HOH B . D 2 HOH 33 45 153 HOH HOH B . D 2 HOH 34 46 154 HOH HOH B . # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal REFMAC refinement 5.2.0019 ? 1 ADSC 'data collection' Quantum ? 2 MOSFLM 'data reduction' . ? 3 SCALA 'data scaling' . ? 4 SHARP phasing . ? 5 # _cell.entry_id 2OBZ _cell.length_a 17.339 _cell.length_b 32.074 _cell.length_c 44.341 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 2OBZ _symmetry.space_group_name_H-M 'P 21 21 21' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? # _exptl.entry_id 2OBZ _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 1.63 _exptl_crystal.density_percent_sol 24.58 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector ? _diffrn_detector.type ? _diffrn_detector.pdbx_collection_date 2000-03-01 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'Si(111)' _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.9199 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'APS BEAMLINE 19-ID' _diffrn_source.pdbx_synchrotron_site APS _diffrn_source.pdbx_synchrotron_beamline 19-ID _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 0.9199 # _reflns.entry_id 2OBZ _reflns.observed_criterion_sigma_F 0 _reflns.observed_criterion_sigma_I 1.5 _reflns.d_resolution_high 1.1 _reflns.d_resolution_low 26 _reflns.number_all 10059 _reflns.number_obs 9673 _reflns.percent_possible_obs 96.164 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI ? _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy ? _reflns.R_free_details ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _reflns_shell.d_res_high 1.1 _reflns_shell.d_res_low ? _reflns_shell.percent_possible_all ? _reflns_shell.Rmerge_I_obs ? _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs ? _reflns_shell.pdbx_redundancy ? _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_diffrn_id ? _reflns_shell.pdbx_ordinal 1 # _refine.entry_id 2OBZ _refine.ls_number_reflns_obs 9673 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 25.98 _refine.ls_d_res_high 1.10 _refine.ls_percent_reflns_obs 96.16 _refine.ls_R_factor_obs 0.20227 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.20172 _refine.ls_R_factor_R_free 0.21332 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 4.7 _refine.ls_number_reflns_R_free 482 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.955 _refine.correlation_coeff_Fo_to_Fc_free 0.957 _refine.B_iso_mean 8.100 _refine.aniso_B[1][1] 0.53 _refine.aniso_B[2][2] 0.32 _refine.aniso_B[3][3] -0.85 _refine.aniso_B[1][2] 0.00 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details MASK _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.40 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS' _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct SAD _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R 0.046 _refine.pdbx_overall_ESU_R_Free 0.042 _refine.overall_SU_ML 0.026 _refine.overall_SU_B 1.093 _refine.ls_redundancy_reflns_obs ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 242 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 54 _refine_hist.number_atoms_total 296 _refine_hist.d_res_high 1.10 _refine_hist.d_res_low 25.98 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 0.007 0.021 ? 270 'X-RAY DIFFRACTION' ? r_bond_other_d 0.003 0.020 ? 112 'X-RAY DIFFRACTION' ? r_angle_refined_deg 1.686 3.000 ? 414 'X-RAY DIFFRACTION' ? r_angle_other_deg 1.177 3.000 ? 280 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg ? ? ? ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg ? ? ? ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg ? ? ? ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg ? ? ? ? 'X-RAY DIFFRACTION' ? r_chiral_restr 0.068 0.200 ? 44 'X-RAY DIFFRACTION' ? r_gen_planes_refined 0.008 0.020 ? 128 'X-RAY DIFFRACTION' ? r_gen_planes_other 0.001 0.020 ? 24 'X-RAY DIFFRACTION' ? r_nbd_refined 0.131 0.200 ? 42 'X-RAY DIFFRACTION' ? r_nbd_other 0.270 0.200 ? 132 'X-RAY DIFFRACTION' ? r_nbtor_refined 0.276 0.200 ? 76 'X-RAY DIFFRACTION' ? r_nbtor_other 0.072 0.200 ? 73 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined 0.075 0.200 ? 45 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined 0.098 0.200 ? 4 'X-RAY DIFFRACTION' ? r_symmetry_vdw_other 0.223 0.200 ? 20 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined 0.091 0.200 ? 11 'X-RAY DIFFRACTION' ? r_symmetry_hbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcbond_it ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcangle_it ? ? ? ? 'X-RAY DIFFRACTION' ? r_scbond_it 1.786 3.000 ? 412 'X-RAY DIFFRACTION' ? r_scangle_it 1.849 4.500 ? 414 'X-RAY DIFFRACTION' ? r_rigid_bond_restr 1.050 3.000 ? 412 'X-RAY DIFFRACTION' ? r_sphericity_free ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_bonded 2.993 3.000 ? 242 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 1.100 _refine_ls_shell.d_res_low 1.129 _refine_ls_shell.number_reflns_R_work 473 _refine_ls_shell.R_factor_R_work 0.269 _refine_ls_shell.percent_reflns_obs 65.48 _refine_ls_shell.R_factor_R_free 0.302 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 24 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _database_PDB_matrix.entry_id 2OBZ _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _struct.entry_id 2OBZ _struct.title 'Crystal structure of the The brominated Z-DNA duplex d(CGCG[BrU]G)' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2OBZ _struct_keywords.pdbx_keywords DNA _struct_keywords.text 'brominated DNA z-DNA, DNA' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 2 ? # _struct_ref.id 1 _struct_ref.entity_id 1 _struct_ref.db_name PDB _struct_ref.db_code 2OBZ _struct_ref.pdbx_db_accession 2OBZ _struct_ref.pdbx_db_isoform ? _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 2OBZ A 1 ? 6 ? 2OBZ 1 ? 6 ? 1 6 2 1 2OBZ B 1 ? 6 ? 2OBZ 7 ? 12 ? 7 12 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _struct_biol.id 1 _struct_biol.details 'The biological unit is a duplex' # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A DG 4 "O3'" ? ? ? 1_555 A BRU 5 P ? ? A DG 4 A BRU 5 1_555 ? ? ? ? ? ? ? 1.595 ? ? covale2 covale both ? A BRU 5 "O3'" ? ? ? 1_555 A DG 6 P ? ? A BRU 5 A DG 6 1_555 ? ? ? ? ? ? ? 1.586 ? ? covale3 covale both ? B DG 4 "O3'" ? ? ? 1_555 B BRU 5 P ? ? B DG 10 B BRU 11 1_555 ? ? ? ? ? ? ? 1.591 ? ? covale4 covale both ? B BRU 5 "O3'" ? ? ? 1_555 B DG 6 P ? ? B BRU 11 B DG 12 1_555 ? ? ? ? ? ? ? 1.600 ? ? hydrog1 hydrog ? ? A DC 1 N3 ? ? ? 1_555 B DG 6 N1 ? ? A DC 1 B DG 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A DC 1 N4 ? ? ? 1_555 B DG 6 O6 ? ? A DC 1 B DG 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A DC 1 O2 ? ? ? 1_555 B DG 6 N2 ? ? A DC 1 B DG 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A DG 2 N1 ? ? ? 1_555 B BRU 5 O2 ? ? A DG 2 B BRU 11 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog5 hydrog ? ? A DG 2 O6 ? ? ? 1_555 B BRU 5 N3 ? ? A DG 2 B BRU 11 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog6 hydrog ? ? A DC 3 N3 ? ? ? 1_555 B DG 4 N1 ? ? A DC 3 B DG 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A DC 3 N4 ? ? ? 1_555 B DG 4 O6 ? ? A DC 3 B DG 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A DC 3 O2 ? ? ? 1_555 B DG 4 N2 ? ? A DC 3 B DG 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A DG 4 N1 ? ? ? 1_555 B DC 3 N3 ? ? A DG 4 B DC 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A DG 4 N2 ? ? ? 1_555 B DC 3 O2 ? ? A DG 4 B DC 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A DG 4 O6 ? ? ? 1_555 B DC 3 N4 ? ? A DG 4 B DC 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A BRU 5 N3 ? ? ? 1_555 B DG 2 O6 ? ? A BRU 5 B DG 8 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog13 hydrog ? ? A BRU 5 O2 ? ? ? 1_555 B DG 2 N1 ? ? A BRU 5 B DG 8 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog14 hydrog ? ? A DG 6 N1 ? ? ? 1_555 B DC 1 N3 ? ? A DG 6 B DC 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A DG 6 N2 ? ? ? 1_555 B DC 1 O2 ? ? A DG 6 B DC 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A DG 6 O6 ? ? ? 1_555 B DC 1 N4 ? ? A DG 6 B DC 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? hydrog ? ? # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A BRU 5 A BRU 5 ? DU ? 2 B BRU 5 B BRU 11 ? DU ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal BRU N1 N N N 1 BRU C2 C N N 2 BRU N3 N N N 3 BRU C4 C N N 4 BRU C5 C N N 5 BRU C6 C N N 6 BRU O2 O N N 7 BRU O4 O N N 8 BRU BR BR N N 9 BRU "C1'" C N R 10 BRU "C2'" C N N 11 BRU "C3'" C N S 12 BRU "C4'" C N R 13 BRU "O3'" O N N 14 BRU "O4'" O N N 15 BRU "C5'" C N N 16 BRU "O5'" O N N 17 BRU P P N N 18 BRU OP1 O N N 19 BRU OP2 O N N 20 BRU OP3 O N N 21 BRU HN3 H N N 22 BRU H6 H N N 23 BRU "H1'" H N N 24 BRU "H2'" H N N 25 BRU "H2''" H N N 26 BRU "H3'" H N N 27 BRU "H4'" H N N 28 BRU "HO3'" H N N 29 BRU "H5'" H N N 30 BRU "H5''" H N N 31 BRU HOP2 H N N 32 BRU HOP3 H N N 33 DC OP3 O N N 34 DC P P N N 35 DC OP1 O N N 36 DC OP2 O N N 37 DC "O5'" O N N 38 DC "C5'" C N N 39 DC "C4'" C N R 40 DC "O4'" O N N 41 DC "C3'" C N S 42 DC "O3'" O N N 43 DC "C2'" C N N 44 DC "C1'" C N R 45 DC N1 N N N 46 DC C2 C N N 47 DC O2 O N N 48 DC N3 N N N 49 DC C4 C N N 50 DC N4 N N N 51 DC C5 C N N 52 DC C6 C N N 53 DC HOP3 H N N 54 DC HOP2 H N N 55 DC "H5'" H N N 56 DC "H5''" H N N 57 DC "H4'" H N N 58 DC "H3'" H N N 59 DC "HO3'" H N N 60 DC "H2'" H N N 61 DC "H2''" H N N 62 DC "H1'" H N N 63 DC H41 H N N 64 DC H42 H N N 65 DC H5 H N N 66 DC H6 H N N 67 DG OP3 O N N 68 DG P P N N 69 DG OP1 O N N 70 DG OP2 O N N 71 DG "O5'" O N N 72 DG "C5'" C N N 73 DG "C4'" C N R 74 DG "O4'" O N N 75 DG "C3'" C N S 76 DG "O3'" O N N 77 DG "C2'" C N N 78 DG "C1'" C N R 79 DG N9 N Y N 80 DG C8 C Y N 81 DG N7 N Y N 82 DG C5 C Y N 83 DG C6 C N N 84 DG O6 O N N 85 DG N1 N N N 86 DG C2 C N N 87 DG N2 N N N 88 DG N3 N N N 89 DG C4 C Y N 90 DG HOP3 H N N 91 DG HOP2 H N N 92 DG "H5'" H N N 93 DG "H5''" H N N 94 DG "H4'" H N N 95 DG "H3'" H N N 96 DG "HO3'" H N N 97 DG "H2'" H N N 98 DG "H2''" H N N 99 DG "H1'" H N N 100 DG H8 H N N 101 DG H1 H N N 102 DG H21 H N N 103 DG H22 H N N 104 HOH O O N N 105 HOH H1 H N N 106 HOH H2 H N N 107 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal BRU N1 C2 sing N N 1 BRU N1 C6 sing N N 2 BRU N1 "C1'" sing N N 3 BRU C2 N3 sing N N 4 BRU C2 O2 doub N N 5 BRU N3 C4 sing N N 6 BRU N3 HN3 sing N N 7 BRU C4 C5 sing N N 8 BRU C4 O4 doub N N 9 BRU C5 C6 doub N N 10 BRU C5 BR sing N N 11 BRU C6 H6 sing N N 12 BRU "C1'" "C2'" sing N N 13 BRU "C1'" "O4'" sing N N 14 BRU "C1'" "H1'" sing N N 15 BRU "C2'" "C3'" sing N N 16 BRU "C2'" "H2'" sing N N 17 BRU "C2'" "H2''" sing N N 18 BRU "C3'" "C4'" sing N N 19 BRU "C3'" "O3'" sing N N 20 BRU "C3'" "H3'" sing N N 21 BRU "C4'" "O4'" sing N N 22 BRU "C4'" "C5'" sing N N 23 BRU "C4'" "H4'" sing N N 24 BRU "O3'" "HO3'" sing N N 25 BRU "C5'" "O5'" sing N N 26 BRU "C5'" "H5'" sing N N 27 BRU "C5'" "H5''" sing N N 28 BRU "O5'" P sing N N 29 BRU P OP1 doub N N 30 BRU P OP2 sing N N 31 BRU P OP3 sing N N 32 BRU OP2 HOP2 sing N N 33 BRU OP3 HOP3 sing N N 34 DC OP3 P sing N N 35 DC OP3 HOP3 sing N N 36 DC P OP1 doub N N 37 DC P OP2 sing N N 38 DC P "O5'" sing N N 39 DC OP2 HOP2 sing N N 40 DC "O5'" "C5'" sing N N 41 DC "C5'" "C4'" sing N N 42 DC "C5'" "H5'" sing N N 43 DC "C5'" "H5''" sing N N 44 DC "C4'" "O4'" sing N N 45 DC "C4'" "C3'" sing N N 46 DC "C4'" "H4'" sing N N 47 DC "O4'" "C1'" sing N N 48 DC "C3'" "O3'" sing N N 49 DC "C3'" "C2'" sing N N 50 DC "C3'" "H3'" sing N N 51 DC "O3'" "HO3'" sing N N 52 DC "C2'" "C1'" sing N N 53 DC "C2'" "H2'" sing N N 54 DC "C2'" "H2''" sing N N 55 DC "C1'" N1 sing N N 56 DC "C1'" "H1'" sing N N 57 DC N1 C2 sing N N 58 DC N1 C6 sing N N 59 DC C2 O2 doub N N 60 DC C2 N3 sing N N 61 DC N3 C4 doub N N 62 DC C4 N4 sing N N 63 DC C4 C5 sing N N 64 DC N4 H41 sing N N 65 DC N4 H42 sing N N 66 DC C5 C6 doub N N 67 DC C5 H5 sing N N 68 DC C6 H6 sing N N 69 DG OP3 P sing N N 70 DG OP3 HOP3 sing N N 71 DG P OP1 doub N N 72 DG P OP2 sing N N 73 DG P "O5'" sing N N 74 DG OP2 HOP2 sing N N 75 DG "O5'" "C5'" sing N N 76 DG "C5'" "C4'" sing N N 77 DG "C5'" "H5'" sing N N 78 DG "C5'" "H5''" sing N N 79 DG "C4'" "O4'" sing N N 80 DG "C4'" "C3'" sing N N 81 DG "C4'" "H4'" sing N N 82 DG "O4'" "C1'" sing N N 83 DG "C3'" "O3'" sing N N 84 DG "C3'" "C2'" sing N N 85 DG "C3'" "H3'" sing N N 86 DG "O3'" "HO3'" sing N N 87 DG "C2'" "C1'" sing N N 88 DG "C2'" "H2'" sing N N 89 DG "C2'" "H2''" sing N N 90 DG "C1'" N9 sing N N 91 DG "C1'" "H1'" sing N N 92 DG N9 C8 sing Y N 93 DG N9 C4 sing Y N 94 DG C8 N7 doub Y N 95 DG C8 H8 sing N N 96 DG N7 C5 sing Y N 97 DG C5 C6 sing N N 98 DG C5 C4 doub Y N 99 DG C6 O6 doub N N 100 DG C6 N1 sing N N 101 DG N1 C2 sing N N 102 DG N1 H1 sing N N 103 DG C2 N2 sing N N 104 DG C2 N3 doub N N 105 DG N2 H21 sing N N 106 DG N2 H22 sing N N 107 DG N3 C4 sing N N 108 HOH O H1 sing N N 109 HOH O H2 sing N N 110 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 2OBZ 'z-form double helix' 2OBZ 'mismatched base pair' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A DC 1 1_555 B DG 6 1_555 -0.279 -0.195 0.241 5.137 0.838 2.237 1 A_DC1:DG12_B A 1 ? B 12 ? 19 1 1 A DG 2 1_555 B BRU 5 1_555 2.330 -0.616 0.197 -5.469 5.074 6.329 2 A_DG2:BRU11_B A 2 ? B 11 ? 28 ? 1 A DC 3 1_555 B DG 4 1_555 -0.243 -0.110 0.124 4.460 0.033 2.461 3 A_DC3:DG10_B A 3 ? B 10 ? 19 1 1 A DG 4 1_555 B DC 3 1_555 0.131 -0.104 0.096 -6.820 1.873 4.396 4 A_DG4:DC9_B A 4 ? B 9 ? 19 1 1 A BRU 5 1_555 B DG 2 1_555 -2.273 -0.630 -0.087 3.755 8.576 6.939 5 A_BRU5:DG8_B A 5 ? B 8 ? 28 ? 1 A DG 6 1_555 B DC 1 1_555 0.352 -0.228 0.232 0.186 0.912 1.887 6 A_DG6:DC7_B A 6 ? B 7 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A DC 1 1_555 B DG 6 1_555 A DG 2 1_555 B BRU 5 1_555 0.213 4.983 3.750 3.218 1.110 2.899 49.248 39.635 3.822 16.173 -46.880 4.471 1 AA_DC1DG2:BRU11DG12_BB A 1 ? B 12 ? A 2 ? B 11 ? 1 A DG 2 1_555 B BRU 5 1_555 A DC 3 1_555 B DG 4 1_555 -0.300 -0.417 3.177 -1.651 -8.456 -56.408 0.885 -0.402 3.081 8.889 -1.736 -57.009 2 AA_DG2DC3:DG10BRU11_BB A 2 ? B 11 ? A 3 ? B 10 ? 1 A DC 3 1_555 B DG 4 1_555 A DG 4 1_555 B DC 3 1_555 -0.078 5.428 3.849 -0.489 -3.824 -6.952 -21.005 -2.883 5.971 28.800 -3.686 -7.949 3 AA_DC3DG4:DC9DG10_BB A 3 ? B 10 ? A 4 ? B 9 ? 1 A DG 4 1_555 B DC 3 1_555 A BRU 5 1_555 B DG 2 1_555 -0.003 -0.696 3.250 5.125 -5.823 -57.467 1.023 0.265 3.162 6.025 5.303 -57.944 4 AA_DG4BRU5:DG8DC9_BB A 4 ? B 9 ? A 5 ? B 8 ? 1 A BRU 5 1_555 B DG 2 1_555 A DG 6 1_555 B DC 1 1_555 -0.042 4.923 3.472 -4.566 0.101 -0.848 -61.629 -41.101 0.486 -1.755 -79.464 -4.645 5 AA_BRU5DG6:DC7DG8_BB A 5 ? B 8 ? A 6 ? B 7 ? # _atom_sites.entry_id 2OBZ _atom_sites.fract_transf_matrix[1][1] 0.057675 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.031178 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.022552 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol BR C N O P # loop_