HEADER UNKNOWN FUNCTION 20-DEC-06 2OC6 TITLE CRYSTAL STRUCTURE OF A PROTEIN FROM THE DUF1801 FAMILY (YDHG, TITLE 2 BSU05750) FROM BACILLUS SUBTILIS AT 1.75 A RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: YDHG PROTEIN; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACILLUS SUBTILIS; SOURCE 3 ORGANISM_TAXID: 1423; SOURCE 4 GENE: YDHG; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID KEYWDS SECRETION CHAPERONE-LIKE FOLD, STRUCTURAL GENOMICS, JOINT CENTER FOR KEYWDS 2 STRUCTURAL GENOMICS, JCSG, PROTEIN STRUCTURE INITIATIVE, PSI-2, KEYWDS 3 UNKNOWN FUNCTION EXPDTA X-RAY DIFFRACTION AUTHOR JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) REVDAT 6 25-JAN-23 2OC6 1 REMARK SEQADV LINK REVDAT 5 18-OCT-17 2OC6 1 REMARK REVDAT 4 13-JUL-11 2OC6 1 VERSN REVDAT 3 23-MAR-11 2OC6 1 HEADER TITLE KEYWDS REVDAT 2 24-FEB-09 2OC6 1 VERSN REVDAT 1 16-JAN-07 2OC6 0 JRNL AUTH JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) JRNL TITL CRYSTAL STRUCTURE OF HYPOTHETICAL PROTEIN (NP_388456.1) FROM JRNL TITL 2 BACILLUS SUBTILIS AT 1.75 A RESOLUTION JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.75 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0005 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD WITH PHASES REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.75 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 37.11 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 84.1 REMARK 3 NUMBER OF REFLECTIONS : 23443 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.175 REMARK 3 R VALUE (WORKING SET) : 0.173 REMARK 3 FREE R VALUE : 0.217 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1168 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.75 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.80 REMARK 3 REFLECTION IN BIN (WORKING SET) : 662 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 33.80 REMARK 3 BIN R VALUE (WORKING SET) : 0.2500 REMARK 3 BIN FREE R VALUE SET COUNT : 37 REMARK 3 BIN FREE R VALUE : 0.3630 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2000 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 59 REMARK 3 SOLVENT ATOMS : 191 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 30.17 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.98000 REMARK 3 B22 (A**2) : -0.16000 REMARK 3 B33 (A**2) : 0.49000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 1.91000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.137 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.132 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.087 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 5.498 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.967 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.949 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2175 ; 0.017 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 1918 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2975 ; 1.274 ; 1.943 REMARK 3 BOND ANGLES OTHERS (DEGREES): 4446 ; 0.760 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 266 ; 5.494 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 105 ;32.202 ;24.286 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 333 ;10.888 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 8 ;25.692 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 321 ; 0.079 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2403 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 453 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 449 ; 0.204 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 1887 ; 0.167 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1058 ; 0.185 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 1151 ; 0.082 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 142 ; 0.162 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): 1 ; 0.029 ; 0.200 REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 13 ; 0.157 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 39 ; 0.266 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 13 ; 0.109 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1384 ; 1.653 ; 3.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 510 ; 0.402 ; 3.000 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2085 ; 2.212 ; 5.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1008 ; 3.800 ; 8.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 880 ; 4.683 ;11.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 0 A 123 REMARK 3 ORIGIN FOR THE GROUP (A): 17.1375 19.5018 13.5416 REMARK 3 T TENSOR REMARK 3 T11: -0.1005 T22: -0.1341 REMARK 3 T33: -0.0932 T12: -0.0038 REMARK 3 T13: 0.0443 T23: 0.0119 REMARK 3 L TENSOR REMARK 3 L11: 3.6198 L22: 2.1346 REMARK 3 L33: 2.0419 L12: -0.7384 REMARK 3 L13: -1.3421 L23: 0.3693 REMARK 3 S TENSOR REMARK 3 S11: -0.1090 S12: -0.1396 S13: -0.0179 REMARK 3 S21: 0.0493 S22: 0.0553 S23: 0.0378 REMARK 3 S31: -0.0126 S32: 0.0328 S33: 0.0538 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 0 B 123 REMARK 3 ORIGIN FOR THE GROUP (A): -2.2996 -4.0458 17.4014 REMARK 3 T TENSOR REMARK 3 T11: -0.0855 T22: -0.1408 REMARK 3 T33: -0.0788 T12: -0.0066 REMARK 3 T13: 0.0477 T23: -0.0035 REMARK 3 L TENSOR REMARK 3 L11: 3.9203 L22: 2.3493 REMARK 3 L33: 1.8218 L12: 1.1414 REMARK 3 L13: -1.5053 L23: -0.3572 REMARK 3 S TENSOR REMARK 3 S11: -0.1461 S12: 0.1369 S13: 0.0163 REMARK 3 S21: -0.0928 S22: 0.1000 S23: -0.0102 REMARK 3 S31: 0.0225 S32: -0.0360 S33: 0.0461 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REMARK 3 1. HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS. REMARK 3 2. ATOM RECORD CONTAINS RESIDUAL B FACTORS ONLY. REMARK 3 3. A MET-INHIBITION PROTOCOL WAS USED FOR SELENOMETHIONINE REMARK 3 INCORPORATION DURING PROTEIN EXPRESSION. THE OCCUPANCY REMARK 3 OF THE SE ATOMS IN THE MSE RESIDUES WAS REDUCED TO 0.75 REMARK 3 FOR THE REDUCED SCATTERING POWER DUE TO PARTIAL S-MET REMARK 3 INCORPORATION. REMARK 3 4. THERE IS UNMODELED DENSITY NEAR RESIDUES B26 AND B40. REMARK 3 5. THE NOMINAL RESOLUTION IS 1.90 A WITH 2925 OBSERVED REFLECTIONS REMARK 3 BETWEEN 1.90-1.75 (48.5% COMPLETE FOR THIS SHELL) INCLUDED IN THE REMARK 3 REFINEMENT. REMARK 3 6. SULFATE, GLYCEROL, AND ACETATE WERE MODELED BASED ON REMARK 3 CRYSTALLIZATION CONDITIONS. REMARK 4 REMARK 4 2OC6 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 27-DEC-06. REMARK 100 THE DEPOSITION ID IS D_1000040951. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 20-OCT-06 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 23-ID-D REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97921, 0.97942 REMARK 200 MONOCHROMATOR : SI(111) DOUBLE CRYSTAL REMARK 200 MONOCHROMETER REMARK 200 OPTICS : ADJUSTABLE FOCUSING MIRRORS IN K REMARK 200 -B GEOMETRY REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 23448 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.750 REMARK 200 RESOLUTION RANGE LOW (A) : 37.113 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 85.1 REMARK 200 DATA REDUNDANCY : 3.200 REMARK 200 R MERGE (I) : 0.07800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.75 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.81 REMARK 200 COMPLETENESS FOR SHELL (%) : 40.2 REMARK 200 DATA REDUNDANCY IN SHELL : 1.90 REMARK 200 R MERGE FOR SHELL (I) : 0.32200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SHELX, AUTOSHARP, SHELXD REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.09 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.37 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 32.0% POLYETHYLENE GLYCOL 8000, 0.25M REMARK 280 AMMONIUM SULFATE, VAPOR DIFFUSION, SITTING DROP, NANODROP, REMARK 280 TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 136 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 135 LIES ON A SPECIAL POSITION. REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASP A 2 CG OD1 OD2 REMARK 470 GLU A 18 CD OE1 OE2 REMARK 470 LYS A 28 CD CE NZ REMARK 470 LYS A 59 CG CD CE NZ REMARK 470 LYS A 60 CE NZ REMARK 470 LYS A 68 CG CD CE NZ REMARK 470 LYS A 80 CE NZ REMARK 470 LYS A 123 CG CD CE NZ REMARK 470 ASP B 2 CG OD1 OD2 REMARK 470 LYS B 28 CD CE NZ REMARK 470 ASN B 33 CG OD1 ND2 REMARK 470 LYS B 59 CD CE NZ REMARK 470 LYS B 60 CE NZ REMARK 470 LYS B 68 CD CE NZ REMARK 470 LYS B 80 CE NZ REMARK 470 LYS B 105 CD CE NZ REMARK 470 LYS B 123 NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 MSE A 106 SE MSE A 106 CE -0.423 REMARK 500 MSE B 106 SE MSE B 106 CE -0.360 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 67 154.30 78.58 REMARK 500 THR A 86 -167.44 -122.68 REMARK 500 GLU B 67 151.87 82.06 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 124 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 125 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT A 126 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT A 127 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 124 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 128 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 129 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 130 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 125 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 126 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 127 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 367782 RELATED DB: TARGETDB REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE CONSTRUCT WAS EXPRESSED WITH A PURIFICATION REMARK 999 TAG MGSDKIHHHHHHENLYFQG. THE TAG WAS REMOVED REMARK 999 WITH TEV PROTEASE LEAVING ONLY A GLYCINE (0), REMARK 999 FOLLOWED BY THE TARGET SEQUENCE. DBREF 2OC6 A 1 123 UNP Q797E6 Q797E6_BACSU 1 123 DBREF 2OC6 B 1 123 UNP Q797E6 Q797E6_BACSU 1 123 SEQADV 2OC6 GLY A 0 UNP Q797E6 EXPRESSION TAG SEQADV 2OC6 MSE A 1 UNP Q797E6 MET 1 MODIFIED RESIDUE SEQADV 2OC6 MSE A 44 UNP Q797E6 MET 44 MODIFIED RESIDUE SEQADV 2OC6 MSE A 106 UNP Q797E6 MET 106 MODIFIED RESIDUE SEQADV 2OC6 GLY B 0 UNP Q797E6 EXPRESSION TAG SEQADV 2OC6 MSE B 1 UNP Q797E6 MET 1 MODIFIED RESIDUE SEQADV 2OC6 MSE B 44 UNP Q797E6 MET 44 MODIFIED RESIDUE SEQADV 2OC6 MSE B 106 UNP Q797E6 MET 106 MODIFIED RESIDUE SEQRES 1 A 124 GLY MSE ASP VAL PHE SER GLU TYR LEU ALA GLY ILE ALA SEQRES 2 A 124 ASP PRO PHE HIS ARG GLU ARG THR GLU GLU VAL LEU THR SEQRES 3 A 124 TRP ILE LYS ASN LYS TYR PRO ASN LEU HIS THR GLU ILE SEQRES 4 A 124 LYS TRP ASN GLN PRO MSE PHE THR ASP HIS GLY THR PHE SEQRES 5 A 124 ILE ILE GLY PHE SER VAL SER LYS LYS HIS LEU ALA VAL SEQRES 6 A 124 ALA PRO GLU LYS VAL THR ILE ALA HIS VAL GLU ASP ASP SEQRES 7 A 124 ILE VAL LYS ALA GLY TYR ASP TYR THR GLU GLN LEU ILE SEQRES 8 A 124 ARG ILE PRO TRP ASN GLY PRO VAL ASP TYR THR LEU LEU SEQRES 9 A 124 GLU LYS MSE ILE GLU PHE ASN ILE LEU ASP LYS ALA ASP SEQRES 10 A 124 CYS SER THR PHE TRP ARG LYS SEQRES 1 B 124 GLY MSE ASP VAL PHE SER GLU TYR LEU ALA GLY ILE ALA SEQRES 2 B 124 ASP PRO PHE HIS ARG GLU ARG THR GLU GLU VAL LEU THR SEQRES 3 B 124 TRP ILE LYS ASN LYS TYR PRO ASN LEU HIS THR GLU ILE SEQRES 4 B 124 LYS TRP ASN GLN PRO MSE PHE THR ASP HIS GLY THR PHE SEQRES 5 B 124 ILE ILE GLY PHE SER VAL SER LYS LYS HIS LEU ALA VAL SEQRES 6 B 124 ALA PRO GLU LYS VAL THR ILE ALA HIS VAL GLU ASP ASP SEQRES 7 B 124 ILE VAL LYS ALA GLY TYR ASP TYR THR GLU GLN LEU ILE SEQRES 8 B 124 ARG ILE PRO TRP ASN GLY PRO VAL ASP TYR THR LEU LEU SEQRES 9 B 124 GLU LYS MSE ILE GLU PHE ASN ILE LEU ASP LYS ALA ASP SEQRES 10 B 124 CYS SER THR PHE TRP ARG LYS MODRES 2OC6 MSE A 1 MET SELENOMETHIONINE MODRES 2OC6 MSE A 44 MET SELENOMETHIONINE MODRES 2OC6 MSE A 106 MET SELENOMETHIONINE MODRES 2OC6 MSE B 1 MET SELENOMETHIONINE MODRES 2OC6 MSE B 44 MET SELENOMETHIONINE MODRES 2OC6 MSE B 106 MET SELENOMETHIONINE HET MSE A 1 8 HET MSE A 44 8 HET MSE A 106 8 HET MSE B 1 8 HET MSE B 44 8 HET MSE B 106 8 HET SO4 A 124 5 HET SO4 A 125 5 HET ACT A 126 4 HET ACT A 127 4 HET GOL A 128 6 HET GOL A 129 6 HET GOL A 130 6 HET SO4 B 124 5 HET GOL B 125 6 HET GOL B 126 6 HET GOL B 127 6 HETNAM MSE SELENOMETHIONINE HETNAM SO4 SULFATE ION HETNAM ACT ACETATE ION HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 1 MSE 6(C5 H11 N O2 SE) FORMUL 3 SO4 3(O4 S 2-) FORMUL 5 ACT 2(C2 H3 O2 1-) FORMUL 7 GOL 6(C3 H8 O3) FORMUL 14 HOH *191(H2 O) HELIX 1 1 GLY A 0 VAL A 3 5 4 HELIX 2 2 PHE A 4 GLY A 10 1 7 HELIX 3 3 ASP A 13 TYR A 31 1 19 HELIX 4 4 GLU A 67 VAL A 74 1 8 HELIX 5 5 VAL A 74 GLY A 82 1 9 HELIX 6 6 ASP A 99 LYS A 114 1 16 HELIX 7 7 GLY B 0 VAL B 3 5 4 HELIX 8 8 PHE B 4 GLY B 10 1 7 HELIX 9 9 ASP B 13 TYR B 31 1 19 HELIX 10 10 GLU B 67 VAL B 74 1 8 HELIX 11 11 VAL B 74 GLY B 82 1 9 HELIX 12 12 ASP B 99 LYS B 114 1 16 SHEET 1 A 6 HIS A 35 LYS A 39 0 SHEET 2 A 6 GLN A 42 ASP A 47 -1 O THR A 46 N HIS A 35 SHEET 3 A 6 THR A 50 VAL A 57 -1 O ILE A 53 N PHE A 45 SHEET 4 A 6 HIS A 61 ALA A 65 -1 O ALA A 63 N SER A 56 SHEET 5 A 6 ILE A 90 PRO A 93 -1 O ILE A 92 N LEU A 62 SHEET 6 A 6 ASP A 84 TYR A 85 -1 N ASP A 84 O ARG A 91 SHEET 1 B 6 HIS B 35 LYS B 39 0 SHEET 2 B 6 GLN B 42 ASP B 47 -1 O THR B 46 N HIS B 35 SHEET 3 B 6 THR B 50 VAL B 57 -1 O THR B 50 N ASP B 47 SHEET 4 B 6 HIS B 61 ALA B 65 -1 O ALA B 63 N SER B 56 SHEET 5 B 6 ILE B 90 PRO B 93 -1 O ILE B 92 N LEU B 62 SHEET 6 B 6 ASP B 84 TYR B 85 -1 N ASP B 84 O ARG B 91 LINK C GLY A 0 N MSE A 1 1555 1555 1.33 LINK C MSE A 1 N ASP A 2 1555 1555 1.33 LINK C PRO A 43 N MSE A 44 1555 1555 1.33 LINK C MSE A 44 N PHE A 45 1555 1555 1.33 LINK C LYS A 105 N MSE A 106 1555 1555 1.34 LINK C MSE A 106 N ILE A 107 1555 1555 1.33 LINK C GLY B 0 N MSE B 1 1555 1555 1.33 LINK C MSE B 1 N ASP B 2 1555 1555 1.33 LINK C PRO B 43 N MSE B 44 1555 1555 1.32 LINK C MSE B 44 N PHE B 45 1555 1555 1.33 LINK C LYS B 105 N MSE B 106 1555 1555 1.33 LINK C MSE B 106 N ILE B 107 1555 1555 1.33 SITE 1 AC1 5 GLY A 0 LEU A 34 HIS A 35 THR A 36 SITE 2 AC1 5 HOH A 215 SITE 1 AC2 5 THR A 119 PHE A 120 TRP A 121 HOH A 185 SITE 2 AC2 5 HOH A 210 SITE 1 AC3 6 PHE A 15 HIS A 16 TRP A 94 ASN A 95 SITE 2 AC3 6 HOH A 174 HOH A 211 SITE 1 AC4 3 SER A 58 LYS A 60 HIS A 61 SITE 1 AC5 3 GLY B 0 HIS B 35 THR B 36 SITE 1 AC6 4 TYR A 7 GLY A 10 ILE A 11 VAL A 57 SITE 1 AC7 2 TRP A 40 HIS B 73 SITE 1 AC8 3 GLU A 22 TRP A 26 HOH A 155 SITE 1 AC9 3 PHE B 120 TRP B 121 LYS B 123 SITE 1 BC1 5 TYR B 7 GLY B 10 ILE B 11 VAL B 57 SITE 2 BC1 5 HOH B 140 SITE 1 BC2 3 GLU B 22 TRP B 26 HOH B 148 CRYST1 48.782 46.903 64.568 90.00 110.05 90.00 P 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.020500 0.000000 0.007480 0.00000 SCALE2 0.000000 0.021320 0.000000 0.00000 SCALE3 0.000000 0.000000 0.016490 0.00000