HEADER TRANSFERASE 21-DEC-06 2OCX TITLE CRYSTAL STRUCTURE OF SE-MET FUCOSYLTRANSFERASE NODZ FROM TITLE 2 BRADYRHIZOBIUM COMPND MOL_ID: 1; COMPND 2 MOLECULE: NODULATION FUCOSYLTRANSFERASE NODZ; COMPND 3 CHAIN: A; COMPND 4 EC: 2.4.1.-; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BRADYRHIZOBIUM SP.; SOURCE 3 ORGANISM_TAXID: 133505; SOURCE 4 STRAIN: WM9; SOURCE 5 GENE: NODZ; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21 CODONPLUS(DE3)RIPL; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET3A KEYWDS GLYCOSYLTRANSFERASE, FUCOSYLTRANSFERASE, NODZ, NODULATION, KEYWDS 2 TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR K.BRZEZINSKI,T.STEPKOWSKI,S.PANJIKAR,G.BUJACZ,M.JASKOLSKI REVDAT 6 27-DEC-23 2OCX 1 REMARK SEQADV LINK REVDAT 5 18-OCT-17 2OCX 1 REMARK REVDAT 4 13-JUL-11 2OCX 1 VERSN REVDAT 3 24-FEB-09 2OCX 1 VERSN REVDAT 2 04-MAR-08 2OCX 1 COMPND REVDAT 1 06-NOV-07 2OCX 0 JRNL AUTH K.BRZEZINSKI,T.STEPKOWSKI,S.PANJIKAR,G.BUJACZ,M.JASKOLSKI JRNL TITL HIGH-RESOLUTION STRUCTURE OF NODZ FUCOSYLTRANSFERASE JRNL TITL 2 INVOLVED IN THE BIOSYNTHESIS OF THE NODULATION FACTOR. JRNL REF ACTA BIOCHIM.POL. V. 54 537 2007 JRNL REFN ISSN 0001-527X JRNL PMID 17762900 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH K.BRZEZINSKI,B.ROGOZINSKI,T.STEPKOWSKI,G.BUJACZ,M.JASKOLSKI REMARK 1 TITL CLONING, PURIFICATION, CRYSTALLIZATION AND PRELIMINARY REMARK 1 TITL 2 CRYSTALLOGRAPHIC STUDIES OF BRADYRHIZOBIUM REMARK 1 TITL 3 FUCOSYLTRANSFERASE NODZ REMARK 1 REF ACTA CRYSTALLOGR.,SECT.D V. 60 344 2004 REMARK 1 REFN ISSN 0907-4449 REMARK 1 REFERENCE 2 REMARK 1 AUTH D.QUESADA-VINCENS,R.FELLAY,T.NASIM,V.VIPREY,U.BURGER, REMARK 1 AUTH 2 J.C.PROME,W.J.BROUGHTON,S.JABBOURI REMARK 1 TITL RHIZOBIUM SP. STRAIN NGR234 NODZ PROTEIN IS A REMARK 1 TITL 2 FUCOSYLTRANSFERASE REMARK 1 REF J.BACTERIOL. V. 179 5087 1997 REMARK 1 REFN ISSN 0021-9193 REMARK 1 REFERENCE 3 REMARK 1 AUTH C.QUINTO,A.H.WIJFJES,G.V.BLOEMBERG,L.BLOK-TIP, REMARK 1 AUTH 2 I.M.LOPEZ-LARA,B.J.LUGTENBERG,J.E.THOMAS-OATES,H.P.SPAINK REMARK 1 TITL BACTERIAL NODULATION PROTEIN NODZ IS A CHITIN REMARK 1 TITL 2 OLIGOSACCHARIDE FUCOSYLTRANSFERASE WHICH CAN ALSO RECOGNIZE REMARK 1 TITL 3 RELATED SUBSTRATES OF ANIMAL ORIGIN REMARK 1 REF PROC.NATL.ACAD.SCI.USA V. 94 4336 1997 REMARK 1 REFN ISSN 0027-8424 REMARK 2 REMARK 2 RESOLUTION. 2.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0005 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.96 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 3 NUMBER OF REFLECTIONS : 22498 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.186 REMARK 3 R VALUE (WORKING SET) : 0.184 REMARK 3 FREE R VALUE : 0.217 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.700 REMARK 3 FREE R VALUE TEST SET COUNT : 1062 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.20 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.26 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1519 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.26 REMARK 3 BIN R VALUE (WORKING SET) : 0.2230 REMARK 3 BIN FREE R VALUE SET COUNT : 84 REMARK 3 BIN FREE R VALUE : 0.2920 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2349 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 23 REMARK 3 SOLVENT ATOMS : 180 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 35.40 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 32.68 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.42000 REMARK 3 B22 (A**2) : -1.42000 REMARK 3 B33 (A**2) : 2.13000 REMARK 3 B12 (A**2) : -0.71000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.197 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.168 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.120 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 8.947 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.953 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.938 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2423 ; 0.017 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3290 ; 1.532 ; 1.960 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 291 ; 5.935 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 116 ;32.511 ;22.155 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 396 ;14.577 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 28 ;20.007 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 359 ; 0.090 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2669 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 521 ; 0.211 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1170 ; 0.185 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 154 ; 0.148 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 10 ; 0.199 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 14 ; 0.196 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1754 ; 1.004 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2393 ; 1.456 ; 2.500 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1061 ; 4.065 ; 5.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 897 ; 5.571 ;10.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 2 A 150 REMARK 3 ORIGIN FOR THE GROUP (A): -0.3960 -54.1991 2.1647 REMARK 3 T TENSOR REMARK 3 T11: -0.1759 T22: -0.1148 REMARK 3 T33: -0.1582 T12: 0.0033 REMARK 3 T13: 0.0375 T23: 0.0092 REMARK 3 L TENSOR REMARK 3 L11: 1.5190 L22: 3.6049 REMARK 3 L33: 1.5895 L12: -0.2017 REMARK 3 L13: -0.1707 L23: -0.9800 REMARK 3 S TENSOR REMARK 3 S11: 0.0378 S12: -0.0868 S13: -0.0947 REMARK 3 S21: 0.0905 S22: -0.0546 S23: -0.1882 REMARK 3 S31: -0.0161 S32: 0.0481 S33: 0.0168 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 151 A 317 REMARK 3 ORIGIN FOR THE GROUP (A): -16.6828 -30.6473 2.6332 REMARK 3 T TENSOR REMARK 3 T11: -0.1238 T22: -0.0833 REMARK 3 T33: -0.1169 T12: 0.0235 REMARK 3 T13: 0.0389 T23: 0.0126 REMARK 3 L TENSOR REMARK 3 L11: 3.6702 L22: 4.0372 REMARK 3 L33: 3.0038 L12: -2.3207 REMARK 3 L13: -1.2934 L23: 1.7109 REMARK 3 S TENSOR REMARK 3 S11: -0.0423 S12: -0.2931 S13: 0.1258 REMARK 3 S21: 0.2143 S22: 0.0714 S23: -0.0147 REMARK 3 S31: -0.0655 S32: 0.1145 S33: -0.0292 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: THE REFINEMENT INCLUDED TLS PARAMETERS. REMARK 3 RESIDUES 179-190, 245-256 AND 318-330 WERE NOT MODELED DUE TO REMARK 3 LACK OF ELECTRON DENSITY. THERE WAS NO OBSERVED ELECTRON DENSITY REMARK 3 FOR SIDE CHAIN ATOMS OF RESIDUES 87, 102, 118, 119, 177, 178, REMARK 3 191, 193, 227, 258, 259, 305, 306, 307, 310. THOSE ATOMS WERE REMARK 3 MODELED WITH ZERO OCCUPANCY AND B-FACTOR OF 70 A2. REMARK 4 REMARK 4 2OCX COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 18-JAN-07. REMARK 100 THE DEPOSITION ID IS D_1000040977. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 20-NOV-04 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : EMBL/DESY, HAMBURG REMARK 200 BEAMLINE : BW7A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9537, 0.9787, 0.9790 REMARK 200 MONOCHROMATOR : SI DOUBLE CRYSTAL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MAR CCD 165 MM REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 22609 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.200 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 42.60 REMARK 200 R MERGE (I) : 0.08500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 56.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.28 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 43.10 REMARK 200 R MERGE FOR SHELL (I) : 0.34600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 13.40 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: AUTO-RICKSHAW REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 56.44 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.82 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.3M POTASSIUM DIHYDROGEN PHOSPHATE, REMARK 280 0.1M TRIS-HCL, PH 7.5, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 292K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 65 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/6 REMARK 290 6555 X-Y,X,Z+5/6 REMARK 290 7555 Y,X,-Z+2/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+1/3 REMARK 290 10555 -Y,-X,-Z+1/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+5/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 64.13333 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 32.06667 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 48.10000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 16.03333 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 80.16667 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 64.13333 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 32.06667 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 16.03333 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 48.10000 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 80.16667 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 359 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 398 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MSE A 1 REMARK 465 GLY A 179 REMARK 465 ASN A 180 REMARK 465 GLY A 181 REMARK 465 GLU A 182 REMARK 465 ASP A 183 REMARK 465 ILE A 184 REMARK 465 MSE A 185 REMARK 465 GLU A 186 REMARK 465 HIS A 187 REMARK 465 ALA A 188 REMARK 465 PRO A 189 REMARK 465 TYR A 190 REMARK 465 ARG A 245 REMARK 465 PHE A 246 REMARK 465 GLN A 247 REMARK 465 ALA A 248 REMARK 465 ASP A 249 REMARK 465 ARG A 250 REMARK 465 ALA A 251 REMARK 465 GLY A 252 REMARK 465 PRO A 253 REMARK 465 LEU A 254 REMARK 465 HIS A 255 REMARK 465 SER A 256 REMARK 465 TYR A 318 REMARK 465 GLU A 319 REMARK 465 HIS A 320 REMARK 465 PHE A 321 REMARK 465 ALA A 322 REMARK 465 ALA A 323 REMARK 465 SER A 324 REMARK 465 HIS A 325 REMARK 465 HIS A 326 REMARK 465 HIS A 327 REMARK 465 HIS A 328 REMARK 465 HIS A 329 REMARK 465 HIS A 330 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 ARG A 87 NE CZ NH1 NH2 REMARK 480 GLU A 102 CG CD OE1 OE2 REMARK 480 ARG A 118 CD NE CZ NH1 NH2 REMARK 480 GLU A 119 CD OE1 OE2 REMARK 480 ARG A 177 CD NE CZ NH1 NH2 REMARK 480 HIS A 178 CG ND1 CD2 CE1 NE2 REMARK 480 TRP A 191 CG CD1 CD2 NE1 CE2 CE3 CZ2 REMARK 480 TRP A 191 CZ3 CH2 REMARK 480 ASP A 193 CG OD1 OD2 REMARK 480 GLN A 227 CG CD OE1 NE2 REMARK 480 GLU A 258 CG CD OE1 OE2 REMARK 480 MSE A 259 CG SE CE REMARK 480 LEU A 305 CB CG CD1 CD2 REMARK 480 SER A 306 CB OG REMARK 480 ASN A 307 CG OD1 ND2 REMARK 480 HIS A 310 CG ND1 CD2 CE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 5 NE - CZ - NH1 ANGL. DEV. = 3.5 DEGREES REMARK 500 ARG A 5 NE - CZ - NH2 ANGL. DEV. = -4.4 DEGREES REMARK 500 ARG A 10 NE - CZ - NH2 ANGL. DEV. = -3.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 13 -153.44 -102.63 REMARK 500 ASP A 129 53.00 -146.21 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ASN A 316 PRO A 317 41.81 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 A 331 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 A 332 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 A 333 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE TRS A 334 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2HHC RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF FUCOSYLTRANSFERASE NODZ FROM BRADYRHIZOBIUM REMARK 900 RELATED ID: 2HLH RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF FUCOSYLTRANSFERASE NODZ FROM BRADYRHIZOBIUM DBREF 2OCX A 1 324 UNP Q9AQ17 Q9AQ17_BRASW 1 324 SEQADV 2OCX MSE A 1 UNP Q9AQ17 MET 1 MODIFIED RESIDUE SEQADV 2OCX MSE A 133 UNP Q9AQ17 MET 133 MODIFIED RESIDUE SEQADV 2OCX MSE A 185 UNP Q9AQ17 MET 185 MODIFIED RESIDUE SEQADV 2OCX MSE A 203 UNP Q9AQ17 MET 203 MODIFIED RESIDUE SEQADV 2OCX MSE A 259 UNP Q9AQ17 MET 259 MODIFIED RESIDUE SEQADV 2OCX MSE A 271 UNP Q9AQ17 MET 271 MODIFIED RESIDUE SEQADV 2OCX MSE A 313 UNP Q9AQ17 MET 313 MODIFIED RESIDUE SEQADV 2OCX HIS A 325 UNP Q9AQ17 EXPRESSION TAG SEQADV 2OCX HIS A 326 UNP Q9AQ17 EXPRESSION TAG SEQADV 2OCX HIS A 327 UNP Q9AQ17 EXPRESSION TAG SEQADV 2OCX HIS A 328 UNP Q9AQ17 EXPRESSION TAG SEQADV 2OCX HIS A 329 UNP Q9AQ17 EXPRESSION TAG SEQADV 2OCX HIS A 330 UNP Q9AQ17 EXPRESSION TAG SEQRES 1 A 330 MSE THR LYS GLU ARG PHE VAL ILE SER ARG ARG ARG THR SEQRES 2 A 330 GLY PHE GLY ASP CYS LEU TRP SER LEU ALA SER ALA TRP SEQRES 3 A 330 SER TYR ALA GLN ARG THR GLY ARG THR LEU VAL ILE ASP SEQRES 4 A 330 TRP ARG GLY SER CYS TYR VAL GLU GLN PRO PHE SER ASN SEQRES 5 A 330 ALA PHE PRO ALA PHE PHE GLU PRO VAL GLU ASP ILE ALA SEQRES 6 A 330 GLY VAL PRO VAL ILE CYS ASP ASP ARG VAL ASN GLN LEU SEQRES 7 A 330 SER PHE PRO GLY PRO PHE PHE PRO ARG TRP TRP ASN ARG SEQRES 8 A 330 PRO SER ILE ASP CYS ILE ASN ARG PRO ASP GLU GLN ILE SEQRES 9 A 330 PHE ARG GLU ARG ASP GLU LEU THR GLU LEU PHE GLN ALA SEQRES 10 A 330 ARG GLU ASP SER GLU ALA ASN THR ILE VAL CYS ASP ALA SEQRES 11 A 330 CYS LEU MSE TRP ARG CYS SER GLU GLU ALA GLU ARG LEU SEQRES 12 A 330 ILE PHE ARG ASN ILE LYS LEU ARG SER GLU ILE ARG ALA SEQRES 13 A 330 ARG ILE ASP ALA LEU TYR GLU GLU HIS PHE SER GLY HIS SEQRES 14 A 330 SER ILE ILE GLY VAL HIS VAL ARG HIS GLY ASN GLY GLU SEQRES 15 A 330 ASP ILE MSE GLU HIS ALA PRO TYR TRP ALA ASP SER GLU SEQRES 16 A 330 LEU ALA LEU HIS GLN VAL CYS MSE ALA ILE ARG LYS ALA SEQRES 17 A 330 LYS ALA LEU SER TYR PRO LYS PRO VAL LYS VAL PHE LEU SEQRES 18 A 330 CYS THR ASP SER ALA GLN VAL LEU ASP GLN VAL SER GLY SEQRES 19 A 330 LEU PHE PRO ASP VAL PHE ALA VAL PRO LYS ARG PHE GLN SEQRES 20 A 330 ALA ASP ARG ALA GLY PRO LEU HIS SER ALA GLU MSE GLY SEQRES 21 A 330 ILE GLU GLY GLY ALA SER ALA LEU ILE ASP MSE TYR LEU SEQRES 22 A 330 LEU ALA ARG CYS ALA THR VAL ILE ARG PHE PRO PRO THR SEQRES 23 A 330 SER ALA PHE THR ARG TYR ALA ARG LEU LEU VAL PRO ARG SEQRES 24 A 330 ILE ILE GLU PHE ASP LEU SER ASN PRO GLY HIS LEU THR SEQRES 25 A 330 MSE ILE ASP ASN PRO TYR GLU HIS PHE ALA ALA SER HIS SEQRES 26 A 330 HIS HIS HIS HIS HIS MODRES 2OCX MSE A 133 MET SELENOMETHIONINE MODRES 2OCX MSE A 203 MET SELENOMETHIONINE MODRES 2OCX MSE A 259 MET SELENOMETHIONINE MODRES 2OCX MSE A 271 MET SELENOMETHIONINE MODRES 2OCX MSE A 313 MET SELENOMETHIONINE HET MSE A 133 8 HET MSE A 203 12 HET MSE A 259 8 HET MSE A 271 12 HET MSE A 313 12 HET PO4 A 331 5 HET PO4 A 332 5 HET PO4 A 333 5 HET TRS A 334 8 HETNAM MSE SELENOMETHIONINE HETNAM PO4 PHOSPHATE ION HETNAM TRS 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL HETSYN TRS TRIS BUFFER FORMUL 1 MSE 5(C5 H11 N O2 SE) FORMUL 2 PO4 3(O4 P 3-) FORMUL 5 TRS C4 H12 N O3 1+ FORMUL 6 HOH *180(H2 O) HELIX 1 1 GLY A 14 GLY A 33 1 20 HELIX 2 2 ALA A 53 PHE A 58 1 6 HELIX 3 3 ASP A 72 GLN A 77 5 6 HELIX 4 4 PRO A 86 ARG A 91 5 6 HELIX 5 5 PRO A 92 ILE A 97 5 6 HELIX 6 6 PRO A 100 ALA A 117 1 18 HELIX 7 7 SER A 137 ILE A 148 1 12 HELIX 8 8 ARG A 151 PHE A 166 1 16 HELIX 9 9 TRP A 191 ALA A 210 1 20 HELIX 10 10 SER A 225 PHE A 236 1 12 HELIX 11 11 ALA A 257 ALA A 275 1 19 HELIX 12 12 SER A 287 PHE A 289 5 3 HELIX 13 13 THR A 290 VAL A 297 1 8 SHEET 1 A 6 ASP A 63 ILE A 64 0 SHEET 2 A 6 VAL A 67 ILE A 70 -1 O VAL A 67 N ILE A 64 SHEET 3 A 6 THR A 35 ASP A 39 1 N ILE A 38 O ILE A 70 SHEET 4 A 6 PHE A 6 ARG A 10 1 N SER A 9 O VAL A 37 SHEET 5 A 6 THR A 125 CYS A 128 1 O ILE A 126 N ILE A 8 SHEET 6 A 6 PHE A 84 PHE A 85 1 N PHE A 85 O VAL A 127 SHEET 1 B 6 VAL A 239 PHE A 240 0 SHEET 2 B 6 VAL A 217 THR A 223 1 N VAL A 219 O PHE A 240 SHEET 3 B 6 SER A 170 VAL A 176 1 N VAL A 174 O CYS A 222 SHEET 4 B 6 THR A 279 PHE A 283 1 O ILE A 281 N GLY A 173 SHEET 5 B 6 ARG A 299 PHE A 303 1 O ILE A 301 N VAL A 280 SHEET 6 B 6 LEU A 311 ASP A 315 -1 O THR A 312 N GLU A 302 LINK C LEU A 132 N MSE A 133 1555 1555 1.32 LINK C MSE A 133 N TRP A 134 1555 1555 1.34 LINK C CYS A 202 N MSE A 203 1555 1555 1.33 LINK C MSE A 203 N ALA A 204 1555 1555 1.33 LINK C GLU A 258 N MSE A 259 1555 1555 1.34 LINK C MSE A 259 N GLY A 260 1555 1555 1.34 LINK C ASP A 270 N MSE A 271 1555 1555 1.32 LINK C MSE A 271 N TYR A 272 1555 1555 1.33 LINK C THR A 312 N MSE A 313 1555 1555 1.32 LINK C MSE A 313 N ILE A 314 1555 1555 1.33 CISPEP 1 GLY A 82 PRO A 83 0 -2.76 CISPEP 2 PHE A 85 PRO A 86 0 -7.37 CISPEP 3 PHE A 283 PRO A 284 0 13.15 SITE 1 AC1 6 PRO A 86 TRP A 88 ARG A 91 GLN A 103 SITE 2 AC1 6 ARG A 106 GLU A 110 SITE 1 AC2 4 PHE A 6 SER A 79 TRS A 334 HOH A 378 SITE 1 AC3 5 GLU A 59 ARG A 151 SER A 152 GLU A 153 SITE 2 AC3 5 HOH A 434 SITE 1 AC4 7 LYS A 3 GLU A 4 ARG A 74 LEU A 78 SITE 2 AC4 7 PO4 A 332 HOH A 447 HOH A 474 CRYST1 124.200 124.200 96.200 90.00 90.00 120.00 P 65 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008054 0.004650 0.000000 0.00000 SCALE2 0.000000 0.009300 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010399 0.00000