HEADER ENDOCYTOSIS/EXOCYTOSIS 21-DEC-06 2OCY TITLE COMPLEX OF THE GUANINE EXCHANGE FACTOR SEC2P AND THE RAB GTPASE SEC4P COMPND MOL_ID: 1; COMPND 2 MOLECULE: RAB GUANINE NUCLEOTIDE EXCHANGE FACTOR SEC2; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: RESIDUES 17-167; COMPND 5 SYNONYM: GDP-GTP EXCHANGE FACTOR SEC2; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: RAS-RELATED PROTEIN SEC4; COMPND 9 CHAIN: C; COMPND 10 FRAGMENT: RESIDUES 18-187; COMPND 11 SYNONYM: SUPPRESSOR OF RHO3 PROTEIN 6; COMPND 12 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 3 ORGANISM_COMMON: BAKER'S YEAST; SOURCE 4 ORGANISM_TAXID: 4932; SOURCE 5 GENE: SEC2; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 MOL_ID: 2; SOURCE 10 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 11 ORGANISM_COMMON: BAKER'S YEAST; SOURCE 12 ORGANISM_TAXID: 4932; SOURCE 13 GENE: SEC4, SRO6; SOURCE 14 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 15 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 16 EXPRESSION_SYSTEM_STRAIN: BL21(DE3) KEYWDS RAB, GEF, GUANINE EXCHANGE FACTOR, COILED-COIL, ENDOCYTOSIS- KEYWDS 2 EXOCYTOSIS COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR K.M.REINISCH,G.DONG REVDAT 5 13-NOV-24 2OCY 1 REMARK REVDAT 4 27-DEC-23 2OCY 1 REMARK SEQADV LINK REVDAT 3 18-OCT-17 2OCY 1 REMARK REVDAT 2 24-FEB-09 2OCY 1 VERSN REVDAT 1 27-FEB-07 2OCY 0 JRNL AUTH G.DONG,M.MEDKOVA,P.NOVICK,K.M.REINISCH JRNL TITL A CATALYTIC COILED COIL: STRUCTURAL INSIGHTS INTO THE JRNL TITL 2 ACTIVATION OF THE RAB GTPASE SEC4P BY SEC2P. JRNL REF MOL.CELL V. 25 455 2007 JRNL REFN ISSN 1097-2765 JRNL PMID 17289591 JRNL DOI 10.1016/J.MOLCEL.2007.01.013 REMARK 2 REMARK 2 RESOLUTION. 3.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 97.7 REMARK 3 NUMBER OF REFLECTIONS : 11817 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.250 REMARK 3 FREE R VALUE : 0.325 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : 1114 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 3.30 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 3.35 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.3830 REMARK 3 BIN FREE R VALUE : 0.4550 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : 27 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3592 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.007 REMARK 3 BOND ANGLES (DEGREES) : 1.200 REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : NULL REMARK 3 BSOL : NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2OCY COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 11-JAN-07. REMARK 100 THE DEPOSITION ID IS D_1000040978. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-FEB-06 REMARK 200 TEMPERATURE (KELVIN) : 160 REMARK 200 PH : 5.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 24-ID-C REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9794 REMARK 200 MONOCHROMATOR : SINGLE CRYSTAL SIDE BOUNCE REMARK 200 MONOCHROMATOR, KOHZU HLD8-24 REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 11817 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.300 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.7 REMARK 200 DATA REDUNDANCY : 4.200 REMARK 200 R MERGE (I) : 0.07700 REMARK 200 R SYM (I) : 0.07700 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 14.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.42 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.7 REMARK 200 DATA REDUNDANCY IN SHELL : 3.00 REMARK 200 R MERGE FOR SHELL (I) : 0.30500 REMARK 200 R SYM FOR SHELL (I) : 0.32700 REMARK 200 <I/SIGMA(I)> FOR SHELL : 3.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SHELXS, SHARP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 63.15 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.34 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100 MM SODIUM ACETATE (PH 5.0), 200 MM REMARK 280 CALCIUM ACETATE, 20% PEG 400, 10MM DTT, VAPOR DIFFUSION, HANGING REMARK 280 DROP, TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 61 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+5/6 REMARK 290 6555 X-Y,X,Z+1/6 REMARK 290 7555 Y,X,-Z+1/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+2/3 REMARK 290 10555 -Y,-X,-Z+5/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+1/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 98.63633 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 197.27267 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 147.95450 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 246.59083 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 49.31817 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 98.63633 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 197.27267 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 246.59083 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 147.95450 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 49.31817 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE COORDINATES REFLECT THE BIOLOGICALLY RELEVANT ASSEMBLY, REMARK 300 WHICH CONSISTS OF TWO SEC2 CHAINS AND ONE SEC4 CHAIN. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 9450 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 28750 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -93.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: HEXAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 25280 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 51120 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -215.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.500000 0.866025 0.000000 -46.49950 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 80.53950 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 49.31817 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASN A 163 REMARK 465 GLU A 164 REMARK 465 SER A 165 REMARK 465 THR A 166 REMARK 465 VAL A 167 REMARK 465 ASN B 163 REMARK 465 GLU B 164 REMARK 465 SER B 165 REMARK 465 THR B 166 REMARK 465 VAL B 167 REMARK 465 ILE C 64 REMARK 465 ASN C 65 REMARK 465 GLY C 66 REMARK 465 LYS C 67 REMARK 465 LYS C 68 REMARK 465 VAL C 69 REMARK 465 ASN C 133 REMARK 465 LYS C 134 REMARK 465 SER C 135 REMARK 465 ASP C 136 REMARK 465 MSE C 137 REMARK 465 GLU C 138 REMARK 465 THR C 139 REMARK 465 ARG C 140 REMARK 465 VAL C 141 REMARK 465 VAL C 142 REMARK 465 THR C 143 REMARK 465 ALA C 144 REMARK 465 LYS C 164 REMARK 465 ASN C 165 REMARK 465 ASP C 166 REMARK 465 ASP C 167 REMARK 465 ASN C 187 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 LYS A 27 CE NZ REMARK 480 LYS A 37 CG CD CE NZ REMARK 480 LYS A 40 CD CE NZ REMARK 480 LYS A 46 CD CE NZ REMARK 480 GLU A 50 CG CD OE1 OE2 REMARK 480 LYS A 96 CE NZ REMARK 480 LYS A 121 CD CE NZ REMARK 480 LYS A 131 CD CE NZ REMARK 480 LYS A 152 CD CE NZ REMARK 480 LYS B 56 CD CE NZ REMARK 480 LYS B 82 CD CE NZ REMARK 480 GLU B 127 CD OE1 OE2 REMARK 480 LYS C 44 CG CD CE NZ REMARK 480 LYS C 58 CD CE REMARK 480 GLN C 79 CG CD OE1 NE2 REMARK 480 ARG C 91 CG CD NE CZ NH1 NH2 REMARK 480 ASP C 101 CG OD1 OD2 REMARK 480 GLU C 105 CG CD OE1 OE2 REMARK 480 ARG C 106 CG CD NE CZ NH1 NH2 REMARK 480 PHE C 108 CG CD1 CD2 CE1 CE2 CZ REMARK 480 LYS C 112 CG CD CE NZ REMARK 480 GLN C 113 CG CD OE1 NE2 REMARK 480 PHE C 115 CG CD1 CD2 CE1 CE2 CZ REMARK 480 LYS C 116 CG CD CE NZ REMARK 480 LEU C 154 C CG CD1 CD2 REMARK 480 GLU C 160 CG CD OE1 OE2 REMARK 480 GLU C 171 CG CD OE1 OE2 REMARK 480 PHE C 174 CG CD1 CD2 CE1 CE2 CZ REMARK 480 LYS C 178 CG CD CE NZ REMARK 480 GLU C 182 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS A 30 -6.69 -49.71 REMARK 500 THR A 41 28.64 -58.79 REMARK 500 ILE A 42 -36.88 -135.75 REMARK 500 ILE A 49 1.47 -54.49 REMARK 500 ASN A 53 -75.36 -71.02 REMARK 500 GLN A 54 -19.24 -49.32 REMARK 500 LEU A 55 -70.05 -73.85 REMARK 500 THR A 61 5.72 -66.76 REMARK 500 ARG A 64 -69.51 -109.49 REMARK 500 GLU A 65 -33.88 -33.11 REMARK 500 LYS A 74 -73.54 -69.10 REMARK 500 ARG A 75 -38.40 -38.74 REMARK 500 ALA A 81 -75.20 -43.41 REMARK 500 ASP A 103 -78.69 -56.79 REMARK 500 LEU A 104 -56.86 -28.39 REMARK 500 ALA A 117 -74.80 -58.28 REMARK 500 ASP A 118 -31.62 -29.19 REMARK 500 ALA A 125 -77.91 -57.68 REMARK 500 ASN A 130 28.87 -79.82 REMARK 500 LYS A 131 -46.52 -137.93 REMARK 500 THR A 134 -8.96 -58.88 REMARK 500 GLU A 135 -74.39 -98.33 REMARK 500 GLN A 136 -25.62 -36.65 REMARK 500 LEU A 144 -71.00 -85.31 REMARK 500 GLN A 150 -5.72 -49.88 REMARK 500 LEU A 151 -77.49 -92.80 REMARK 500 LYS A 152 -35.60 -34.34 REMARK 500 ALA B 16 -74.16 -60.93 REMARK 500 GLU B 32 -36.47 -38.98 REMARK 500 LYS B 46 -82.85 -38.71 REMARK 500 GLU B 85 8.06 -68.43 REMARK 500 ASP B 103 -75.91 -76.50 REMARK 500 LEU B 104 -68.60 -19.64 REMARK 500 ALA B 112 -76.70 -44.83 REMARK 500 ASN B 113 -66.46 -29.60 REMARK 500 MSE B 115 -64.30 -29.36 REMARK 500 VAL B 116 -72.02 -53.70 REMARK 500 ALA B 117 -57.59 -28.45 REMARK 500 ARG B 132 -71.96 -61.81 REMARK 500 LEU B 137 -64.22 -93.05 REMARK 500 LEU B 151 -74.27 -60.39 REMARK 500 LYS B 152 -40.73 -22.70 REMARK 500 LYS B 155 8.30 -59.38 REMARK 500 HIS B 159 30.37 -66.08 REMARK 500 SER B 160 -66.20 -130.68 REMARK 500 LEU B 161 -85.08 -55.07 REMARK 500 SER C 19 77.86 60.67 REMARK 500 VAL C 31 6.32 -65.77 REMARK 500 CYS C 35 9.00 -62.59 REMARK 500 ASP C 43 113.96 -34.48 REMARK 500 REMARK 500 THIS ENTRY HAS 67 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1G17 RELATED DB: PDB REMARK 900 SEC4P + GUANOSINE-5'-(BETA, GAMMA)-IMMIDOTRIPHOSPHATE REMARK 900 RELATED ID: 1G16 RELATED DB: PDB REMARK 900 SEC4P +GDP DBREF 2OCY A 17 167 UNP P17065 SEC2_YEAST 17 167 DBREF 2OCY B 17 167 UNP P17065 SEC2_YEAST 17 167 DBREF 2OCY C 18 187 UNP P07560 SEC4_YEAST 18 187 SEQADV 2OCY SER A 14 UNP P17065 CLONING ARTIFACT SEQADV 2OCY MSE A 15 UNP P17065 CLONING ARTIFACT SEQADV 2OCY ALA A 16 UNP P17065 CLONING ARTIFACT SEQADV 2OCY MSE A 115 UNP P17065 MET 115 MODIFIED RESIDUE SEQADV 2OCY MSE A 158 UNP P17065 MET 158 MODIFIED RESIDUE SEQADV 2OCY SER B 14 UNP P17065 CLONING ARTIFACT SEQADV 2OCY MSE B 15 UNP P17065 CLONING ARTIFACT SEQADV 2OCY ALA B 16 UNP P17065 CLONING ARTIFACT SEQADV 2OCY MSE B 115 UNP P17065 MET 115 MODIFIED RESIDUE SEQADV 2OCY MSE B 158 UNP P17065 MET 158 MODIFIED RESIDUE SEQADV 2OCY MSE C 21 UNP P07560 MET 21 MODIFIED RESIDUE SEQADV 2OCY MSE C 94 UNP P07560 MET 94 MODIFIED RESIDUE SEQADV 2OCY MSE C 137 UNP P07560 MET 137 MODIFIED RESIDUE SEQRES 1 A 154 SER MSE ALA LEU SER THR GLN LEU ILE GLU SER VAL ASP SEQRES 2 A 154 LYS GLN SER HIS LEU GLU GLU GLN LEU ASN LYS SER LEU SEQRES 3 A 154 LYS THR ILE ALA SER GLN LYS ALA ALA ILE GLU ASN TYR SEQRES 4 A 154 ASN GLN LEU LYS GLU ASP TYR ASN THR LEU LYS ARG GLU SEQRES 5 A 154 LEU SER ASP ARG ASP ASP GLU VAL LYS ARG LEU ARG GLU SEQRES 6 A 154 ASP ILE ALA LYS GLU ASN GLU LEU ARG THR LYS ALA GLU SEQRES 7 A 154 GLU GLU ALA ASP LYS LEU ASN LYS GLU VAL GLU ASP LEU SEQRES 8 A 154 THR ALA SER LEU PHE ASP GLU ALA ASN ASN MSE VAL ALA SEQRES 9 A 154 ASP ALA ARG LYS GLU LYS TYR ALA ILE GLU ILE LEU ASN SEQRES 10 A 154 LYS ARG LEU THR GLU GLN LEU ARG GLU LYS ASP THR LEU SEQRES 11 A 154 LEU ASP THR LEU THR LEU GLN LEU LYS ASN LEU LYS LYS SEQRES 12 A 154 VAL MSE HIS SER LEU ASP ASN GLU SER THR VAL SEQRES 1 B 154 SER MSE ALA LEU SER THR GLN LEU ILE GLU SER VAL ASP SEQRES 2 B 154 LYS GLN SER HIS LEU GLU GLU GLN LEU ASN LYS SER LEU SEQRES 3 B 154 LYS THR ILE ALA SER GLN LYS ALA ALA ILE GLU ASN TYR SEQRES 4 B 154 ASN GLN LEU LYS GLU ASP TYR ASN THR LEU LYS ARG GLU SEQRES 5 B 154 LEU SER ASP ARG ASP ASP GLU VAL LYS ARG LEU ARG GLU SEQRES 6 B 154 ASP ILE ALA LYS GLU ASN GLU LEU ARG THR LYS ALA GLU SEQRES 7 B 154 GLU GLU ALA ASP LYS LEU ASN LYS GLU VAL GLU ASP LEU SEQRES 8 B 154 THR ALA SER LEU PHE ASP GLU ALA ASN ASN MSE VAL ALA SEQRES 9 B 154 ASP ALA ARG LYS GLU LYS TYR ALA ILE GLU ILE LEU ASN SEQRES 10 B 154 LYS ARG LEU THR GLU GLN LEU ARG GLU LYS ASP THR LEU SEQRES 11 B 154 LEU ASP THR LEU THR LEU GLN LEU LYS ASN LEU LYS LYS SEQRES 12 B 154 VAL MSE HIS SER LEU ASP ASN GLU SER THR VAL SEQRES 1 C 170 ASP SER ILE MSE LYS ILE LEU LEU ILE GLY ASP SER GLY SEQRES 2 C 170 VAL GLY LYS SER CYS LEU LEU VAL ARG PHE VAL GLU ASP SEQRES 3 C 170 LYS PHE ASN PRO SER PHE ILE THR THR ILE GLY ILE ASP SEQRES 4 C 170 PHE LYS ILE LYS THR VAL ASP ILE ASN GLY LYS LYS VAL SEQRES 5 C 170 LYS LEU GLN LEU TRP ASP THR ALA GLY GLN GLU ARG PHE SEQRES 6 C 170 ARG THR ILE THR THR ALA TYR TYR ARG GLY ALA MSE GLY SEQRES 7 C 170 ILE ILE LEU VAL TYR ASP VAL THR ASP GLU ARG THR PHE SEQRES 8 C 170 THR ASN ILE LYS GLN TRP PHE LYS THR VAL ASN GLU HIS SEQRES 9 C 170 ALA ASN ASP GLU ALA GLN LEU LEU LEU VAL GLY ASN LYS SEQRES 10 C 170 SER ASP MSE GLU THR ARG VAL VAL THR ALA ASP GLN GLY SEQRES 11 C 170 GLU ALA LEU ALA LYS GLU LEU GLY ILE PRO PHE ILE GLU SEQRES 12 C 170 SER SER ALA LYS ASN ASP ASP ASN VAL ASN GLU ILE PHE SEQRES 13 C 170 PHE THR LEU ALA LYS LEU ILE GLN GLU LYS ILE ASP SER SEQRES 14 C 170 ASN MODRES 2OCY MSE A 15 MET SELENOMETHIONINE MODRES 2OCY MSE A 115 MET SELENOMETHIONINE MODRES 2OCY MSE A 158 MET SELENOMETHIONINE MODRES 2OCY MSE B 15 MET SELENOMETHIONINE MODRES 2OCY MSE B 115 MET SELENOMETHIONINE MODRES 2OCY MSE B 158 MET SELENOMETHIONINE MODRES 2OCY MSE C 21 MET SELENOMETHIONINE MODRES 2OCY MSE C 94 MET SELENOMETHIONINE HET MSE A 15 8 HET MSE A 115 8 HET MSE A 158 8 HET MSE B 15 8 HET MSE B 115 8 HET MSE B 158 8 HET MSE C 21 8 HET MSE C 94 8 HETNAM MSE SELENOMETHIONINE FORMUL 1 MSE 8(C5 H11 N O2 SE) HELIX 1 1 ALA A 16 ASN A 51 1 36 HELIX 2 2 TYR A 52 ARG A 64 1 13 HELIX 3 3 ARG A 64 GLU A 92 1 29 HELIX 4 4 GLU A 92 VAL A 157 1 66 HELIX 5 5 SER B 14 SER B 24 1 11 HELIX 6 6 VAL B 25 MSE B 158 1 134 HELIX 7 7 SER C 29 SER C 34 1 6 HELIX 8 8 CYS C 35 VAL C 41 1 7 HELIX 9 9 PHE C 82 ARG C 91 1 10 HELIX 10 10 ASP C 104 HIS C 121 1 18 HELIX 11 11 GLY C 147 GLU C 153 1 7 HELIX 12 12 GLU C 171 GLU C 182 1 12 SHEET 1 A 5 ILE C 55 LYS C 60 0 SHEET 2 A 5 LEU C 71 THR C 76 -1 O LEU C 73 N LYS C 58 SHEET 3 A 5 ILE C 23 ILE C 26 1 N ILE C 23 O GLN C 72 SHEET 4 A 5 ILE C 96 VAL C 99 1 O VAL C 99 N ILE C 26 SHEET 5 A 5 LEU C 128 VAL C 131 1 O VAL C 131 N LEU C 98 LINK C SER A 14 N MSE A 15 1555 1555 1.33 LINK C MSE A 15 N ALA A 16 1555 1555 1.33 LINK C ASN A 114 N MSE A 115 1555 1555 1.32 LINK C MSE A 115 N VAL A 116 1555 1555 1.33 LINK C VAL A 157 N MSE A 158 1555 1555 1.33 LINK C MSE A 158 N HIS A 159 1555 1555 1.33 LINK C SER B 14 N MSE B 15 1555 1555 1.33 LINK C MSE B 15 N ALA B 16 1555 1555 1.33 LINK C ASN B 114 N MSE B 115 1555 1555 1.33 LINK C MSE B 115 N VAL B 116 1555 1555 1.33 LINK C VAL B 157 N MSE B 158 1555 1555 1.33 LINK C MSE B 158 N HIS B 159 1555 1555 1.33 LINK C ILE C 20 N MSE C 21 1555 1555 1.33 LINK C MSE C 21 N LYS C 22 1555 1555 1.33 LINK C ALA C 93 N MSE C 94 1555 1555 1.33 LINK C MSE C 94 N GLY C 95 1555 1555 1.33 CRYST1 92.999 92.999 295.909 90.00 90.00 120.00 P 61 2 2 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010753 0.006208 0.000000 0.00000 SCALE2 0.000000 0.012416 0.000000 0.00000 SCALE3 0.000000 0.000000 0.003379 0.00000