HEADER LYASE 21-DEC-06 2OCZ TITLE THE STRUCTURE OF A PUTATIVE 3-DEHYDROQUINATE DEHYDRATASE FROM TITLE 2 STREPTOCOCCUS PYOGENES. COMPND MOL_ID: 1; COMPND 2 MOLECULE: 3-DEHYDROQUINATE DEHYDRATASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: 3-DEHYDROQUINASE, TYPE I DHQASE; COMPND 5 EC: 4.2.1.10; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STREPTOCOCCUS PYOGENES SEROTYPE M1; SOURCE 3 ORGANISM_TAXID: 301447; SOURCE 4 STRAIN: M1 GAS; SOURCE 5 GENE: AROD; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PMCSG19 KEYWDS STRUCTURAL GENOMICS, TYPE I 3-DEHYDROQUINATE DEHYDRATASE, DHQASE, KEYWDS 2 STREPTOCOCCUS PYOGENES, DEHYDROSHIKIMATE, PSI-2, PROTEIN STRUCTURE KEYWDS 3 INITIATIVE, MIDWEST CENTER FOR STRUCTURAL GENOMICS, MCSG, LYASE EXPDTA X-RAY DIFFRACTION AUTHOR M.E.CUFF,E.DUGGAN,S.CLANCY,A.JOACHIMIAK,MIDWEST CENTER FOR STRUCTURAL AUTHOR 2 GENOMICS (MCSG) REVDAT 4 27-DEC-23 2OCZ 1 REMARK SEQADV LINK REVDAT 3 13-JUL-11 2OCZ 1 VERSN REVDAT 2 24-FEB-09 2OCZ 1 VERSN REVDAT 1 23-JAN-07 2OCZ 0 JRNL AUTH M.E.CUFF,E.DUGGAN,S.CLANCY,A.JOACHIMIAK JRNL TITL THE STRUCTURE OF A PUTATIVE 3-DEHYDROQUINATE DEHYDRATASE JRNL TITL 2 FROM STREPTOCOCCUS PYOGENES. JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.85 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD WITH PHASES REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.85 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 36.50 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.1 REMARK 3 NUMBER OF REFLECTIONS : 23052 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.178 REMARK 3 R VALUE (WORKING SET) : 0.175 REMARK 3 FREE R VALUE : 0.230 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1216 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.85 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.90 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1356 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 77.96 REMARK 3 BIN R VALUE (WORKING SET) : 0.2390 REMARK 3 BIN FREE R VALUE SET COUNT : 73 REMARK 3 BIN FREE R VALUE : 0.2570 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1761 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 17 REMARK 3 SOLVENT ATOMS : 311 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 30.30 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 46.84 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.41000 REMARK 3 B22 (A**2) : -1.41000 REMARK 3 B33 (A**2) : 2.82000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.128 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.134 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.087 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 5.357 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.967 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.940 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1860 ; 0.015 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2520 ; 1.343 ; 1.963 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 230 ; 5.519 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 92 ;38.623 ;25.109 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 331 ;14.323 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 9 ;14.629 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 280 ; 0.097 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1413 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 917 ; 0.209 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1296 ; 0.312 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 245 ; 0.154 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): 2 ; 0.058 ; 0.200 REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 37 ; 0.192 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 25 ; 0.163 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1157 ; 1.018 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1830 ; 1.318 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 796 ; 2.647 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 686 ; 4.056 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 0 A 200 REMARK 3 ORIGIN FOR THE GROUP (A): 28.4867 21.8086 21.0724 REMARK 3 T TENSOR REMARK 3 T11: -0.2000 T22: -0.1612 REMARK 3 T33: -0.2063 T12: 0.0297 REMARK 3 T13: -0.0007 T23: -0.0357 REMARK 3 L TENSOR REMARK 3 L11: 3.0496 L22: 1.3698 REMARK 3 L33: 0.7848 L12: 1.4574 REMARK 3 L13: 0.8986 L23: 0.6462 REMARK 3 S TENSOR REMARK 3 S11: 0.0670 S12: -0.0954 S13: 0.1205 REMARK 3 S21: 0.1538 S22: -0.1032 S23: 0.0386 REMARK 3 S31: -0.0039 S32: -0.1068 S33: 0.0361 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 2OCZ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 22-DEC-06. REMARK 100 THE DEPOSITION ID IS D_1000040979. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 21-DEC-05 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97906, 0.97924 REMARK 200 MONOCHROMATOR : SAGITALLY FOCUSED SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 23052 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.850 REMARK 200 RESOLUTION RANGE LOW (A) : 36.500 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.1 REMARK 200 DATA REDUNDANCY : 18.80 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.06500 REMARK 200 FOR THE DATA SET : 9.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.85 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.90 REMARK 200 COMPLETENESS FOR SHELL (%) : 78.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: HKL-3000, SHELXD, MLPHARE, DM, SOLVE, RESOLVE, CCP4 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.57 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.65 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M HEPES PH 7.5, 0.2M MGCL2, 25% PEG REMARK 280 3350, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 42.68200 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 40.84400 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 40.84400 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 64.02300 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 40.84400 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 40.84400 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 21.34100 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 40.84400 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 40.84400 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 64.02300 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 40.84400 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 40.84400 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 21.34100 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 42.68200 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 THIS ENTRY CONTAINS THE CRYSTALLOGRAPHIC ASYMMETRIC UNIT REMARK 300 WHICH CONSISTS OF 1 CHAIN. AUTHORS STATE THAT THE REMARK 300 BIOLOGICAL UNIT OF THIS PROTEIN IS UNKNOWN. THE DIMERIC REMARK 300 ASSEMBLY SHOWN IN REMARK 350 IS PREDICTED BY THE ANALYSIS REMARK 300 OF PROTEIN INTERFACES BASED ON THIS CRYSTAL STRUCTURE. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 -1.000000 0.000000 81.68800 REMARK 350 BIOMT2 2 -1.000000 0.000000 0.000000 81.68800 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 42.68200 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A -2 REMARK 465 ASN A -1 REMARK 465 ASP A 202 REMARK 465 HIS A 203 REMARK 465 VAL A 204 REMARK 465 SER A 205 REMARK 465 GLY A 206 REMARK 465 PRO A 207 REMARK 465 MSE A 224 REMARK 465 ASP A 225 REMARK 465 ILE A 226 REMARK 465 SER A 227 REMARK 465 ASN A 228 REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 401 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN A 89 OD1 REMARK 620 2 HOH A 505 O 169.1 REMARK 620 3 HOH A 533 O 88.3 90.8 REMARK 620 4 HOH A 552 O 84.2 85.1 92.4 REMARK 620 5 HOH A 707 O 92.1 98.8 94.9 171.7 REMARK 620 6 HOH A 711 O 89.8 90.7 177.3 85.6 87.0 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 504 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: APC29838 RELATED DB: TARGETDB DBREF 2OCZ A 1 228 UNP P63590 AROD_STRP1 1 228 SEQADV 2OCZ SER A -2 UNP P63590 CLONING ARTIFACT SEQADV 2OCZ ASN A -1 UNP P63590 CLONING ARTIFACT SEQADV 2OCZ ALA A 0 UNP P63590 CLONING ARTIFACT SEQADV 2OCZ MSE A 1 UNP P63590 MET 1 MODIFIED RESIDUE SEQADV 2OCZ MSE A 8 UNP P63590 MET 8 MODIFIED RESIDUE SEQADV 2OCZ MSE A 107 UNP P63590 MET 107 MODIFIED RESIDUE SEQADV 2OCZ MSE A 128 UNP P63590 MET 128 MODIFIED RESIDUE SEQADV 2OCZ MSE A 134 UNP P63590 MET 134 MODIFIED RESIDUE SEQADV 2OCZ MSE A 147 UNP P63590 MET 147 MODIFIED RESIDUE SEQADV 2OCZ MSE A 158 UNP P63590 MET 158 MODIFIED RESIDUE SEQADV 2OCZ MSE A 178 UNP P63590 MET 178 MODIFIED RESIDUE SEQADV 2OCZ MSE A 215 UNP P63590 MET 215 MODIFIED RESIDUE SEQADV 2OCZ MSE A 224 UNP P63590 MET 224 MODIFIED RESIDUE SEQRES 1 A 231 SER ASN ALA MSE ARG ILE VAL ALA PRO VAL MSE PRO ARG SEQRES 2 A 231 HIS PHE ASP GLU ALA GLN ALA ILE ASP ILE SER LYS TYR SEQRES 3 A 231 GLU ASP VAL ASN LEU ILE GLU TRP ARG ALA ASP PHE LEU SEQRES 4 A 231 PRO LYS ASP GLU ILE VAL ALA VAL ALA PRO ALA ILE PHE SEQRES 5 A 231 GLU LYS PHE ALA GLY LYS GLU ILE ILE PHE THR LEU ARG SEQRES 6 A 231 THR VAL GLN GLU GLY GLY ASN ILE THR LEU SER SER GLN SEQRES 7 A 231 GLU TYR VAL ASP ILE ILE LYS GLU ILE ASN ALA ILE TYR SEQRES 8 A 231 ASN PRO ASP TYR ILE ASP PHE GLU TYR PHE THR HIS LYS SEQRES 9 A 231 SER VAL PHE GLN GLU MSE LEU ASP PHE PRO ASN LEU ILE SEQRES 10 A 231 LEU SER TYR HIS ASN PHE GLU GLU THR PRO GLU ASN LEU SEQRES 11 A 231 MSE GLU ALA PHE SER GLU MSE THR LYS LEU ALA PRO ARG SEQRES 12 A 231 VAL VAL LYS ILE ALA VAL MSE PRO GLN SER GLU GLN ASP SEQRES 13 A 231 VAL LEU ASP LEU MSE ASN TYR THR ARG GLY PHE LYS THR SEQRES 14 A 231 LEU ASN PRO GLU GLN GLU PHE ALA THR ILE SER MSE GLY SEQRES 15 A 231 LYS LEU GLY ARG LEU SER ARG PHE ALA GLY ASP VAL ILE SEQRES 16 A 231 GLY SER SER TRP THR TYR VAL SER LEU ASP HIS VAL SER SEQRES 17 A 231 GLY PRO GLY GLN VAL THR LEU ASN ASP MSE LYS ARG ILE SEQRES 18 A 231 ILE GLU VAL LEU GLU MSE ASP ILE SER ASN MODRES 2OCZ MSE A 1 MET SELENOMETHIONINE MODRES 2OCZ MSE A 8 MET SELENOMETHIONINE MODRES 2OCZ MSE A 107 MET SELENOMETHIONINE MODRES 2OCZ MSE A 128 MET SELENOMETHIONINE MODRES 2OCZ MSE A 134 MET SELENOMETHIONINE MODRES 2OCZ MSE A 147 MET SELENOMETHIONINE MODRES 2OCZ MSE A 158 MET SELENOMETHIONINE MODRES 2OCZ MSE A 178 MET SELENOMETHIONINE MODRES 2OCZ MSE A 215 MET SELENOMETHIONINE HET MSE A 1 8 HET MSE A 8 8 HET MSE A 107 8 HET MSE A 128 18 HET MSE A 134 8 HET MSE A 147 8 HET MSE A 158 8 HET MSE A 178 8 HET MSE A 215 8 HET MG A 401 1 HET EDO A 501 4 HET EDO A 502 4 HET EDO A 503 4 HET EDO A 504 4 HETNAM MSE SELENOMETHIONINE HETNAM MG MAGNESIUM ION HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 1 MSE 9(C5 H11 N O2 SE) FORMUL 2 MG MG 2+ FORMUL 3 EDO 4(C2 H6 O2) FORMUL 7 HOH *311(H2 O) HELIX 1 1 HIS A 11 ALA A 17 1 7 HELIX 2 2 ASP A 19 GLU A 24 5 6 HELIX 3 3 ASP A 34 LEU A 36 5 3 HELIX 4 4 PRO A 37 ASP A 39 5 3 HELIX 5 5 GLU A 40 PHE A 52 1 13 HELIX 6 6 THR A 63 GLY A 67 5 5 HELIX 7 7 SER A 73 ASN A 89 1 17 HELIX 8 8 HIS A 100 LEU A 108 5 9 HELIX 9 9 ASN A 126 LEU A 137 1 12 HELIX 10 10 SER A 150 ASN A 168 1 19 HELIX 11 11 MSE A 178 ARG A 183 1 6 HELIX 12 12 LEU A 184 PHE A 187 5 4 HELIX 13 13 ALA A 188 GLY A 193 1 6 HELIX 14 14 THR A 211 GLU A 223 1 13 SHEET 1 A 8 GLU A 172 SER A 177 0 SHEET 2 A 8 VAL A 141 VAL A 146 1 N VAL A 142 O ALA A 174 SHEET 3 A 8 LEU A 113 ASN A 119 1 N LEU A 115 O LYS A 143 SHEET 4 A 8 TYR A 92 GLU A 96 1 N PHE A 95 O ILE A 114 SHEET 5 A 8 GLU A 56 THR A 60 1 N PHE A 59 O TYR A 92 SHEET 6 A 8 LEU A 28 ARG A 32 1 N ILE A 29 O ILE A 58 SHEET 7 A 8 ARG A 2 VAL A 7 1 N ALA A 5 O GLU A 30 SHEET 8 A 8 TRP A 196 TYR A 198 1 O THR A 197 N ARG A 2 LINK C ALA A 0 N MSE A 1 1555 1555 1.33 LINK C MSE A 1 N ARG A 2 1555 1555 1.33 LINK C VAL A 7 N MSE A 8 1555 1555 1.33 LINK C MSE A 8 N PRO A 9 1555 1555 1.35 LINK C GLU A 106 N MSE A 107 1555 1555 1.33 LINK C MSE A 107 N LEU A 108 1555 1555 1.33 LINK C LEU A 127 N MSE A 128 1555 1555 1.34 LINK C MSE A 128 N GLU A 129 1555 1555 1.33 LINK C GLU A 133 N MSE A 134 1555 1555 1.33 LINK C MSE A 134 N THR A 135 1555 1555 1.34 LINK C VAL A 146 N MSE A 147 1555 1555 1.33 LINK C MSE A 147 N PRO A 148 1555 1555 1.34 LINK C LEU A 157 N MSE A 158 1555 1555 1.34 LINK C MSE A 158 N ASN A 159 1555 1555 1.34 LINK C SER A 177 N MSE A 178 1555 1555 1.32 LINK C MSE A 178 N GLY A 179 1555 1555 1.33 LINK C ASP A 214 N MSE A 215 1555 1555 1.33 LINK C MSE A 215 N LYS A 216 1555 1555 1.34 LINK OD1 ASN A 89 MG MG A 401 1555 1555 2.02 LINK MG MG A 401 O HOH A 505 1555 1555 2.13 LINK MG MG A 401 O HOH A 533 1555 1555 1.92 LINK MG MG A 401 O HOH A 552 1555 1555 2.19 LINK MG MG A 401 O HOH A 707 1555 1555 1.95 LINK MG MG A 401 O HOH A 711 1555 1555 2.02 SITE 1 AC1 6 ASN A 89 HOH A 505 HOH A 533 HOH A 552 SITE 2 AC1 6 HOH A 707 HOH A 711 SITE 1 AC2 6 GLN A 105 LEU A 108 LEU A 137 HOH A 627 SITE 2 AC2 6 HOH A 665 HOH A 790 SITE 1 AC3 5 LEU A 108 PHE A 110 HOH A 536 HOH A 639 SITE 2 AC3 5 HOH A 774 SITE 1 AC4 4 GLY A 179 ARG A 186 GLY A 208 GLN A 209 SITE 1 AC5 6 TYR A 117 PRO A 124 ASN A 126 HOH A 599 SITE 2 AC5 6 HOH A 631 HOH A 772 CRYST1 81.688 81.688 85.364 90.00 90.00 90.00 P 43 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012242 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012242 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011715 0.00000