HEADER PROTEIN TRANSPORT 01-JAN-07 2OEV TITLE CRYSTAL STRUCTURE OF ALIX/AIP1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROGRAMMED CELL DEATH 6-INTERACTING PROTEIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: BRO1-V DOMAINS, RESIDUES 1-698; COMPND 5 SYNONYM: PDCD6-INTERACTING PROTEIN, ALG-2-INTERACTING PROTEIN 1, COMPND 6 HP95; COMPND 7 ENGINEERED: YES; COMPND 8 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: PDCD6IP, AIP1, ALIX, KIAA1375; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)CODON+(RIL); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET151/D-TOPO KEYWDS COILED-COIL, TETRATRICOPEPTIDE REPEAT, TPR, PROTEIN TRANSPORT EXPDTA X-RAY DIFFRACTION AUTHOR R.D.FISHER,Q.ZHAI,H.ROBINSON,C.P.HILL REVDAT 5 27-DEC-23 2OEV 1 REMARK REVDAT 4 20-OCT-21 2OEV 1 SEQADV REVDAT 3 18-OCT-17 2OEV 1 REMARK REVDAT 2 24-FEB-09 2OEV 1 VERSN REVDAT 1 27-MAR-07 2OEV 0 JRNL AUTH R.D.FISHER,H.Y.CHUNG,Q.ZHAI,H.ROBINSON,W.I.SUNDQUIST, JRNL AUTH 2 C.P.HILL JRNL TITL STRUCTURAL AND BIOCHEMICAL STUDIES OF ALIX/AIP1 AND ITS ROLE JRNL TITL 2 IN RETROVIRUS BUDDING JRNL REF CELL(CAMBRIDGE,MASS.) V. 128 841 2007 JRNL REFN ISSN 0092-8674 JRNL PMID 17350572 JRNL DOI 10.1016/J.CELL.2007.01.035 REMARK 2 REMARK 2 RESOLUTION. 3.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 95.5 REMARK 3 NUMBER OF REFLECTIONS : 13049 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.240 REMARK 3 R VALUE (WORKING SET) : 0.235 REMARK 3 FREE R VALUE : 0.317 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 7.000 REMARK 3 FREE R VALUE TEST SET COUNT : 984 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 3.30 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 3.39 REMARK 3 REFLECTION IN BIN (WORKING SET) : 664 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 67.67 REMARK 3 BIN R VALUE (WORKING SET) : 0.3170 REMARK 3 BIN FREE R VALUE SET COUNT : 56 REMARK 3 BIN FREE R VALUE : 0.4550 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5486 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 137.4 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -8.69000 REMARK 3 B22 (A**2) : 2.41000 REMARK 3 B33 (A**2) : 1.83000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -8.27000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.706 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.605 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 79.773 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.948 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.903 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5570 ; 0.009 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 7525 ; 1.153 ; 1.973 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 696 ; 5.927 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 263 ;40.870 ;25.513 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1035 ;21.536 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 29 ;15.589 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 864 ; 0.080 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4158 ; 0.003 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 2690 ; 0.231 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 3832 ; 0.304 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 249 ; 0.153 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 48 ; 0.179 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 3 ; 0.223 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3562 ; 0.478 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 5608 ; 0.875 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2200 ; 0.713 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1917 ; 1.181 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 2 A 357 REMARK 3 ORIGIN FOR THE GROUP (A): -9.0517 -30.2503 -25.7960 REMARK 3 T TENSOR REMARK 3 T11: -0.1519 T22: -0.0236 REMARK 3 T33: -0.0438 T12: 0.0224 REMARK 3 T13: -0.1203 T23: 0.1462 REMARK 3 L TENSOR REMARK 3 L11: 4.8121 L22: 1.2957 REMARK 3 L33: 0.6418 L12: 0.0589 REMARK 3 L13: 0.6978 L23: -0.6235 REMARK 3 S TENSOR REMARK 3 S11: -0.0651 S12: 0.6209 S13: 0.2407 REMARK 3 S21: -0.1234 S22: 0.1791 S23: 0.1514 REMARK 3 S31: 0.1817 S32: 0.1995 S33: -0.1140 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 363 A 406 REMARK 3 RESIDUE RANGE : A 547 A 636 REMARK 3 ORIGIN FOR THE GROUP (A): -67.8475 -53.9021 -49.3177 REMARK 3 T TENSOR REMARK 3 T11: -0.4870 T22: -0.4664 REMARK 3 T33: 0.2398 T12: 0.0398 REMARK 3 T13: -0.8101 T23: 0.2490 REMARK 3 L TENSOR REMARK 3 L11: 13.2481 L22: 2.4468 REMARK 3 L33: 7.7777 L12: 5.0719 REMARK 3 L13: 9.5732 L23: 4.3241 REMARK 3 S TENSOR REMARK 3 S11: 0.7828 S12: 0.1632 S13: -0.8242 REMARK 3 S21: 0.1081 S22: 0.2741 S23: -0.3297 REMARK 3 S31: 0.7784 S32: 0.4920 S33: -1.0569 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 415 A 532 REMARK 3 RESIDUE RANGE : A 644 A 698 REMARK 3 ORIGIN FOR THE GROUP (A): -72.7727 -26.4672 -59.6100 REMARK 3 T TENSOR REMARK 3 T11: -0.5940 T22: -0.3621 REMARK 3 T33: 0.1501 T12: 0.0818 REMARK 3 T13: -0.2685 T23: -0.2538 REMARK 3 L TENSOR REMARK 3 L11: 14.6568 L22: 14.0267 REMARK 3 L33: 0.4587 L12: 14.1966 REMARK 3 L13: 1.2229 L23: 0.8708 REMARK 3 S TENSOR REMARK 3 S11: -0.3231 S12: -0.4129 S13: 0.1018 REMARK 3 S21: -0.2079 S22: 0.6914 S23: -0.2328 REMARK 3 S31: 0.1272 S32: -0.2524 S33: -0.3682 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 2OEV COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 08-JAN-07. REMARK 100 THE DEPOSITION ID IS D_1000041047. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 20-OCT-06 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X29A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.1 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO, HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 14236 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.300 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 94.6 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.08700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.42 REMARK 200 COMPLETENESS FOR SHELL (%) : 64.9 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.28800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 60.58 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.12 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 8% PEG 4000, 0.1M AMMONIUM ACETATE, REMARK 280 0.1M MAGNESIUM ACETATE, 0.05M HEPES, PH 7.0, VAPOR DIFFUSION, REMARK 280 SITTING DROP, TEMPERATURE 286K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 71.99650 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 49.25500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 71.99650 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 49.25500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -6 REMARK 465 ILE A -5 REMARK 465 ASP A -4 REMARK 465 PRO A -3 REMARK 465 PHE A -2 REMARK 465 THR A -1 REMARK 465 HIS A 0 REMARK 465 MET A 1 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 617 CD GLU A 617 OE1 0.117 REMARK 500 GLU A 617 CD GLU A 617 OE2 0.087 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 28 -84.00 -76.14 REMARK 500 LYS A 60 96.80 -45.17 REMARK 500 HIS A 61 -110.97 -140.06 REMARK 500 GLU A 62 -53.18 -145.55 REMARK 500 PRO A 80 34.63 -79.84 REMARK 500 LYS A 81 -12.66 -143.39 REMARK 500 PHE A 82 -64.28 -143.16 REMARK 500 PHE A 84 -78.46 -75.17 REMARK 500 GLU A 86 70.78 35.42 REMARK 500 ILE A 89 95.09 -45.68 REMARK 500 LYS A 101 89.67 -64.46 REMARK 500 SER A 108 -99.71 -119.12 REMARK 500 ALA A 114 59.81 -103.03 REMARK 500 GLN A 138 135.41 -29.18 REMARK 500 LYS A 147 -38.83 -37.62 REMARK 500 ALA A 149 -70.37 -56.70 REMARK 500 TYR A 153 -73.12 -50.30 REMARK 500 GLN A 154 -39.92 -30.28 REMARK 500 VAL A 167 -70.09 -69.51 REMARK 500 LEU A 171 -143.06 -73.10 REMARK 500 SER A 172 -8.65 -140.32 REMARK 500 ARG A 173 -165.38 -162.12 REMARK 500 PRO A 181 -33.61 -39.34 REMARK 500 SER A 188 -34.68 -38.52 REMARK 500 GLN A 196 -27.07 -38.52 REMARK 500 LYS A 202 -80.65 -55.18 REMARK 500 ALA A 203 -32.49 -23.75 REMARK 500 ASP A 206 21.87 -75.01 REMARK 500 LYS A 207 41.33 39.44 REMARK 500 MET A 208 -177.62 -64.02 REMARK 500 ALA A 214 -76.45 -50.04 REMARK 500 LYS A 215 -33.38 -35.92 REMARK 500 ASN A 218 -71.12 -54.02 REMARK 500 GLN A 219 -26.37 -38.47 REMARK 500 ASP A 222 20.56 -50.75 REMARK 500 LYS A 229 -32.70 -35.99 REMARK 500 THR A 236 103.06 -43.66 REMARK 500 LEU A 237 125.98 -171.16 REMARK 500 LEU A 245 -33.36 -35.62 REMARK 500 GLN A 267 11.41 -67.87 REMARK 500 LEU A 283 -37.64 -39.29 REMARK 500 ASP A 292 -36.20 -35.50 REMARK 500 ILE A 318 -70.01 -120.28 REMARK 500 THR A 341 102.82 -37.88 REMARK 500 GLN A 349 -101.43 -77.77 REMARK 500 LYS A 350 83.21 -60.83 REMARK 500 PRO A 360 160.51 -43.02 REMARK 500 ASN A 400 68.58 60.57 REMARK 500 ILE A 425 -72.55 -64.97 REMARK 500 GLU A 426 31.18 -77.69 REMARK 500 REMARK 500 THIS ENTRY HAS 62 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 LEU A 237 PRO A 238 142.54 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2OEW RELATED DB: PDB REMARK 900 STRUCTURE OF ALIX/AIP1 BRO1 DOMAIN REMARK 900 RELATED ID: 2OEX RELATED DB: PDB REMARK 900 STRUCTURE OF ALIX/AIP1 V DOMAIN DBREF 2OEV A 1 698 UNP Q8WUM4 PDC6I_HUMAN 1 698 SEQADV 2OEV GLY A -6 UNP Q8WUM4 CLONING ARTIFACT SEQADV 2OEV ILE A -5 UNP Q8WUM4 CLONING ARTIFACT SEQADV 2OEV ASP A -4 UNP Q8WUM4 CLONING ARTIFACT SEQADV 2OEV PRO A -3 UNP Q8WUM4 CLONING ARTIFACT SEQADV 2OEV PHE A -2 UNP Q8WUM4 CLONING ARTIFACT SEQADV 2OEV THR A -1 UNP Q8WUM4 CLONING ARTIFACT SEQADV 2OEV HIS A 0 UNP Q8WUM4 CLONING ARTIFACT SEQADV 2OEV TYR A 268 UNP Q8WUM4 LYS 268 ENGINEERED MUTATION SEQADV 2OEV TYR A 269 UNP Q8WUM4 LYS 269 ENGINEERED MUTATION SEQRES 1 A 705 GLY ILE ASP PRO PHE THR HIS MET ALA THR PHE ILE SER SEQRES 2 A 705 VAL GLN LEU LYS LYS THR SER GLU VAL ASP LEU ALA LYS SEQRES 3 A 705 PRO LEU VAL LYS PHE ILE GLN GLN THR TYR PRO SER GLY SEQRES 4 A 705 GLY GLU GLU GLN ALA GLN TYR CYS ARG ALA ALA GLU GLU SEQRES 5 A 705 LEU SER LYS LEU ARG ARG ALA ALA VAL GLY ARG PRO LEU SEQRES 6 A 705 ASP LYS HIS GLU GLY ALA LEU GLU THR LEU LEU ARG TYR SEQRES 7 A 705 TYR ASP GLN ILE CYS SER ILE GLU PRO LYS PHE PRO PHE SEQRES 8 A 705 SER GLU ASN GLN ILE CYS LEU THR PHE THR TRP LYS ASP SEQRES 9 A 705 ALA PHE ASP LYS GLY SER LEU PHE GLY GLY SER VAL LYS SEQRES 10 A 705 LEU ALA LEU ALA SER LEU GLY TYR GLU LYS SER CYS VAL SEQRES 11 A 705 LEU PHE ASN CYS ALA ALA LEU ALA SER GLN ILE ALA ALA SEQRES 12 A 705 GLU GLN ASN LEU ASP ASN ASP GLU GLY LEU LYS ILE ALA SEQRES 13 A 705 ALA LYS HIS TYR GLN PHE ALA SER GLY ALA PHE LEU HIS SEQRES 14 A 705 ILE LYS GLU THR VAL LEU SER ALA LEU SER ARG GLU PRO SEQRES 15 A 705 THR VAL ASP ILE SER PRO ASP THR VAL GLY THR LEU SER SEQRES 16 A 705 LEU ILE MET LEU ALA GLN ALA GLN GLU VAL PHE PHE LEU SEQRES 17 A 705 LYS ALA THR ARG ASP LYS MET LYS ASP ALA ILE ILE ALA SEQRES 18 A 705 LYS LEU ALA ASN GLN ALA ALA ASP TYR PHE GLY ASP ALA SEQRES 19 A 705 PHE LYS GLN CYS GLN TYR LYS ASP THR LEU PRO LYS GLU SEQRES 20 A 705 VAL PHE PRO VAL LEU ALA ALA LYS HIS CYS ILE MET GLN SEQRES 21 A 705 ALA ASN ALA GLU TYR HIS GLN SER ILE LEU ALA LYS GLN SEQRES 22 A 705 GLN TYR TYR PHE GLY GLU GLU ILE ALA ARG LEU GLN HIS SEQRES 23 A 705 ALA ALA GLU LEU ILE LYS THR VAL ALA SER ARG TYR ASP SEQRES 24 A 705 GLU TYR VAL ASN VAL LYS ASP PHE SER ASP LYS ILE ASN SEQRES 25 A 705 ARG ALA LEU ALA ALA ALA LYS LYS ASP ASN ASP PHE ILE SEQRES 26 A 705 TYR HIS ASP ARG VAL PRO ASP LEU LYS ASP LEU ASP PRO SEQRES 27 A 705 ILE GLY LYS ALA THR LEU VAL LYS SER THR PRO VAL ASN SEQRES 28 A 705 VAL PRO ILE SER GLN LYS PHE THR ASP LEU PHE GLU LYS SEQRES 29 A 705 MET VAL PRO VAL SER VAL GLN GLN SER LEU ALA ALA TYR SEQRES 30 A 705 ASN GLN ARG LYS ALA ASP LEU VAL ASN ARG SER ILE ALA SEQRES 31 A 705 GLN MET ARG GLU ALA THR THR LEU ALA ASN GLY VAL LEU SEQRES 32 A 705 ALA SER LEU ASN LEU PRO ALA ALA ILE GLU ASP VAL SER SEQRES 33 A 705 GLY ASP THR VAL PRO GLN SER ILE LEU THR LYS SER ARG SEQRES 34 A 705 SER VAL ILE GLU GLN GLY GLY ILE GLN THR VAL ASP GLN SEQRES 35 A 705 LEU ILE LYS GLU LEU PRO GLU LEU LEU GLN ARG ASN ARG SEQRES 36 A 705 GLU ILE LEU ASP GLU SER LEU ARG LEU LEU ASP GLU GLU SEQRES 37 A 705 GLU ALA THR ASP ASN ASP LEU ARG ALA LYS PHE LYS GLU SEQRES 38 A 705 ARG TRP GLN ARG THR PRO SER ASN GLU LEU TYR LYS PRO SEQRES 39 A 705 LEU ARG ALA GLU GLY THR ASN PHE ARG THR VAL LEU ASP SEQRES 40 A 705 LYS ALA VAL GLN ALA ASP GLY GLN VAL LYS GLU CYS TYR SEQRES 41 A 705 GLN SER HIS ARG ASP THR ILE VAL LEU LEU CYS LYS PRO SEQRES 42 A 705 GLU PRO GLU LEU ASN ALA ALA ILE PRO SER ALA ASN PRO SEQRES 43 A 705 ALA LYS THR MET GLN GLY SER GLU VAL VAL ASN VAL LEU SEQRES 44 A 705 LYS SER LEU LEU SER ASN LEU ASP GLU VAL LYS LYS GLU SEQRES 45 A 705 ARG GLU GLY LEU GLU ASN ASP LEU LYS SER VAL ASN PHE SEQRES 46 A 705 ASP MET THR SER LYS PHE LEU THR ALA LEU ALA GLN ASP SEQRES 47 A 705 GLY VAL ILE ASN GLU GLU ALA LEU SER VAL THR GLU LEU SEQRES 48 A 705 ASP ARG VAL TYR GLY GLY LEU THR THR LYS VAL GLN GLU SEQRES 49 A 705 SER LEU LYS LYS GLN GLU GLY LEU LEU LYS ASN ILE GLN SEQRES 50 A 705 VAL SER HIS GLN GLU PHE SER LYS MET LYS GLN SER ASN SEQRES 51 A 705 ASN GLU ALA ASN LEU ARG GLU GLU VAL LEU LYS ASN LEU SEQRES 52 A 705 ALA THR ALA TYR ASP ASN PHE VAL GLU LEU VAL ALA ASN SEQRES 53 A 705 LEU LYS GLU GLY THR LYS PHE TYR ASN GLU LEU THR GLU SEQRES 54 A 705 ILE LEU VAL ARG PHE GLN ASN LYS CYS SER ASP ILE VAL SEQRES 55 A 705 PHE ALA ARG HELIX 1 1 ALA A 18 TYR A 29 1 12 HELIX 2 2 GLU A 34 GLN A 38 5 5 HELIX 3 3 ALA A 42 GLY A 55 1 14 HELIX 4 4 GLU A 62 SER A 77 1 16 HELIX 5 5 ILE A 78 PHE A 82 5 5 HELIX 6 6 SER A 115 GLN A 138 1 24 HELIX 7 7 ASN A 142 GLU A 165 1 24 HELIX 8 8 THR A 166 LEU A 171 1 6 HELIX 9 9 SER A 180 ASP A 206 1 27 HELIX 10 10 LYS A 209 GLN A 230 1 22 HELIX 11 11 GLU A 240 GLN A 267 1 28 HELIX 12 12 TYR A 269 TYR A 291 1 23 HELIX 13 13 VAL A 297 ILE A 318 1 22 HELIX 14 14 ASP A 325 LEU A 329 5 5 HELIX 15 15 PRO A 360 LEU A 399 1 40 HELIX 16 16 PRO A 414 GLU A 426 1 13 HELIX 17 17 GLY A 429 ALA A 470 1 42 HELIX 18 18 PRO A 480 TYR A 485 1 6 HELIX 19 19 LYS A 486 SER A 515 1 30 HELIX 20 20 HIS A 516 CYS A 524 1 9 HELIX 21 21 PRO A 526 ILE A 534 1 9 HELIX 22 22 SER A 546 VAL A 576 1 31 HELIX 23 23 MET A 580 ASP A 591 1 12 HELIX 24 24 ASN A 595 TYR A 608 1 14 HELIX 25 25 TYR A 608 LYS A 640 1 33 HELIX 26 26 ASN A 644 ALA A 697 1 54 SHEET 1 A 2 PHE A 93 LYS A 96 0 SHEET 2 A 2 LYS A 110 LEU A 113 -1 O LEU A 111 N TRP A 95 CISPEP 1 VAL A 345 PRO A 346 0 2.86 CISPEP 2 LEU A 401 PRO A 402 0 -4.14 CRYST1 143.993 98.510 72.159 90.00 105.64 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006945 0.000000 0.001944 0.00000 SCALE2 0.000000 0.010151 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014391 0.00000