HEADER PROTEIN TRANSPORT 01-JAN-07 2OEW TITLE STRUCTURE OF ALIX/AIP1 BRO1 DOMAIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROGRAMMED CELL DEATH 6-INTERACTING PROTEIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: BRO1 DOMAIN, RESIDUES 1-359; COMPND 5 SYNONYM: PDCD6-INTERACTING PROTEIN, ALG-2-INTERACTING PROTEIN 1, COMPND 6 HP95; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: PDCD6IP, AIP1, ALIX, KIAA1375; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21 (DE3) CODON + (RIL) KEYWDS TETRATRICOPEPTIDE REPEAT, TPR, PROTEIN TRANSPORT EXPDTA X-RAY DIFFRACTION AUTHOR R.D.FISHER,Q.ZHAI,H.ROBINSON,C.P.HILL REVDAT 4 30-AUG-23 2OEW 1 SEQADV REVDAT 3 18-OCT-17 2OEW 1 REMARK REVDAT 2 24-FEB-09 2OEW 1 VERSN REVDAT 1 27-MAR-07 2OEW 0 JRNL AUTH R.D.FISHER,H.Y.CHUNG,Q.ZHAI,H.ROBINSON,W.I.SUNDQUIST, JRNL AUTH 2 C.P.HILL JRNL TITL STRUCTURAL AND BIOCHEMICAL STUDIES OF ALIX/AIP1 AND ITS ROLE JRNL TITL 2 IN RETROVIRUS BUDDING JRNL REF CELL(CAMBRIDGE,MASS.) V. 128 841 2007 JRNL REFN ISSN 0092-8674 JRNL PMID 17350572 JRNL DOI 10.1016/J.CELL.2007.01.035 REMARK 2 REMARK 2 RESOLUTION. 2.55 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.3.0008 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.55 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 96.4 REMARK 3 NUMBER OF REFLECTIONS : 14704 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.212 REMARK 3 R VALUE (WORKING SET) : 0.208 REMARK 3 FREE R VALUE : 0.274 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 783 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.55 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.62 REMARK 3 REFLECTION IN BIN (WORKING SET) : 859 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 77.46 REMARK 3 BIN R VALUE (WORKING SET) : 0.2890 REMARK 3 BIN FREE R VALUE SET COUNT : 48 REMARK 3 BIN FREE R VALUE : 0.3230 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2811 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 79 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 32.06 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.28000 REMARK 3 B22 (A**2) : 3.30000 REMARK 3 B33 (A**2) : -0.91000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 1.05000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.533 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.320 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.217 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 19.140 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.940 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.916 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2884 ; 0.016 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3896 ; 1.544 ; 1.969 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 363 ; 6.901 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 131 ;36.844 ;25.267 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 528 ;20.348 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 11 ;22.113 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 438 ; 0.106 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2155 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1361 ; 0.228 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1961 ; 0.312 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 102 ; 0.160 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 17 ; 0.141 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 5 ; 0.198 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1846 ; 0.755 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2887 ; 1.253 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1159 ; 1.780 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1006 ; 2.820 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 12 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 17 REMARK 3 ORIGIN FOR THE GROUP (A): 14.6001 20.3462 24.5862 REMARK 3 T TENSOR REMARK 3 T11: 0.2650 T22: 0.1851 REMARK 3 T33: 0.2410 T12: -0.1018 REMARK 3 T13: 0.0256 T23: -0.0671 REMARK 3 L TENSOR REMARK 3 L11: 19.6737 L22: 2.5736 REMARK 3 L33: 3.6439 L12: 6.7744 REMARK 3 L13: -4.3723 L23: -1.7487 REMARK 3 S TENSOR REMARK 3 S11: -0.4958 S12: 0.0794 S13: -0.8158 REMARK 3 S21: 0.0107 S22: 0.0269 S23: -0.0986 REMARK 3 S31: 0.5955 S32: -0.2716 S33: 0.4689 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 18 A 45 REMARK 3 ORIGIN FOR THE GROUP (A): -15.9165 28.4233 22.1912 REMARK 3 T TENSOR REMARK 3 T11: 0.5369 T22: 0.5362 REMARK 3 T33: 0.5372 T12: -0.0038 REMARK 3 T13: -0.0004 T23: 0.0015 REMARK 3 L TENSOR REMARK 3 L11: 27.1824 L22: 0.6132 REMARK 3 L33: 1.3431 L12: 4.0480 REMARK 3 L13: -2.7682 L23: -0.5170 REMARK 3 S TENSOR REMARK 3 S11: 1.0747 S12: 0.3194 S13: 0.8322 REMARK 3 S21: 0.5251 S22: -0.7371 S23: 1.8113 REMARK 3 S31: -2.2744 S32: -1.2451 S33: -0.3376 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 46 A 74 REMARK 3 ORIGIN FOR THE GROUP (A): 5.1737 22.0315 17.7907 REMARK 3 T TENSOR REMARK 3 T11: 0.1315 T22: 0.2430 REMARK 3 T33: 0.1267 T12: -0.1489 REMARK 3 T13: -0.0097 T23: -0.1607 REMARK 3 L TENSOR REMARK 3 L11: 15.9299 L22: 5.0716 REMARK 3 L33: 4.4404 L12: 2.9643 REMARK 3 L13: -2.9387 L23: -2.7557 REMARK 3 S TENSOR REMARK 3 S11: -0.6135 S12: 0.9044 S13: -0.4868 REMARK 3 S21: -0.5573 S22: 0.3600 S23: -0.0094 REMARK 3 S31: 0.9035 S32: -0.3771 S33: 0.2535 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 75 A 89 REMARK 3 ORIGIN FOR THE GROUP (A): -5.5243 35.7201 28.6481 REMARK 3 T TENSOR REMARK 3 T11: 0.4853 T22: 0.4851 REMARK 3 T33: 0.4884 T12: -0.0013 REMARK 3 T13: -0.0061 T23: 0.0014 REMARK 3 L TENSOR REMARK 3 L11: 7.5555 L22: 19.4043 REMARK 3 L33: 10.9093 L12: 8.3590 REMARK 3 L13: -1.5774 L23: -12.1111 REMARK 3 S TENSOR REMARK 3 S11: 0.3888 S12: -1.0288 S13: 1.9688 REMARK 3 S21: 3.4554 S22: -0.0763 S23: 1.3447 REMARK 3 S31: -1.5783 S32: -1.5994 S33: -0.3125 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 90 A 105 REMARK 3 ORIGIN FOR THE GROUP (A): 11.0618 21.0305 36.1779 REMARK 3 T TENSOR REMARK 3 T11: 0.2126 T22: 0.4412 REMARK 3 T33: 0.1758 T12: -0.2208 REMARK 3 T13: 0.0060 T23: 0.0313 REMARK 3 L TENSOR REMARK 3 L11: 4.3429 L22: 7.6627 REMARK 3 L33: 9.0316 L12: 2.0082 REMARK 3 L13: -6.1562 L23: -1.4139 REMARK 3 S TENSOR REMARK 3 S11: 0.3718 S12: -1.8647 S13: -0.9481 REMARK 3 S21: 0.7099 S22: -0.6731 S23: -0.1941 REMARK 3 S31: 0.4926 S32: 0.2683 S33: 0.3013 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 106 A 116 REMARK 3 ORIGIN FOR THE GROUP (A): 7.1306 24.6946 37.3303 REMARK 3 T TENSOR REMARK 3 T11: 0.4008 T22: 0.4005 REMARK 3 T33: 0.3950 T12: -0.0522 REMARK 3 T13: 0.0323 T23: -0.0308 REMARK 3 L TENSOR REMARK 3 L11: 6.8241 L22: 1.0270 REMARK 3 L33: 6.1320 L12: 2.6474 REMARK 3 L13: -6.4688 L23: -2.5096 REMARK 3 S TENSOR REMARK 3 S11: 0.6165 S12: -1.0914 S13: -1.0838 REMARK 3 S21: -0.4036 S22: -1.1042 S23: 0.4006 REMARK 3 S31: 1.4007 S32: 0.4923 S33: 0.4876 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 117 A 152 REMARK 3 ORIGIN FOR THE GROUP (A): 18.4217 25.3011 15.1381 REMARK 3 T TENSOR REMARK 3 T11: 0.1897 T22: 0.2662 REMARK 3 T33: 0.1617 T12: -0.1091 REMARK 3 T13: -0.0576 T23: -0.0854 REMARK 3 L TENSOR REMARK 3 L11: 6.4598 L22: 2.4346 REMARK 3 L33: 3.7577 L12: 0.0459 REMARK 3 L13: -3.1552 L23: 0.1060 REMARK 3 S TENSOR REMARK 3 S11: -0.3217 S12: 0.8026 S13: -0.1040 REMARK 3 S21: -0.3065 S22: 0.0146 S23: 0.0379 REMARK 3 S31: 0.2423 S32: -0.4192 S33: 0.3071 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 153 A 165 REMARK 3 ORIGIN FOR THE GROUP (A): 17.9730 34.4269 21.4649 REMARK 3 T TENSOR REMARK 3 T11: 0.1154 T22: 0.1818 REMARK 3 T33: 0.2371 T12: -0.0395 REMARK 3 T13: -0.0407 T23: -0.0652 REMARK 3 L TENSOR REMARK 3 L11: 4.7553 L22: 3.6331 REMARK 3 L33: 4.8106 L12: 0.1426 REMARK 3 L13: -1.0520 L23: -0.7601 REMARK 3 S TENSOR REMARK 3 S11: 0.0658 S12: 0.1759 S13: 0.6554 REMARK 3 S21: 0.1053 S22: 0.0189 S23: 0.1237 REMARK 3 S31: -0.5236 S32: -0.2586 S33: -0.0847 REMARK 3 REMARK 3 TLS GROUP : 9 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 166 A 230 REMARK 3 ORIGIN FOR THE GROUP (A): 27.7865 33.4903 20.2404 REMARK 3 T TENSOR REMARK 3 T11: 0.2394 T22: 0.1991 REMARK 3 T33: 0.2316 T12: -0.0226 REMARK 3 T13: -0.0498 T23: -0.0138 REMARK 3 L TENSOR REMARK 3 L11: 5.5339 L22: 1.7111 REMARK 3 L33: 3.9475 L12: 1.2466 REMARK 3 L13: -1.9607 L23: -0.3847 REMARK 3 S TENSOR REMARK 3 S11: -0.0225 S12: 0.0919 S13: 0.2889 REMARK 3 S21: 0.0225 S22: -0.0383 S23: 0.2108 REMARK 3 S31: -0.0865 S32: -0.1086 S33: 0.0608 REMARK 3 REMARK 3 TLS GROUP : 10 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 231 A 247 REMARK 3 ORIGIN FOR THE GROUP (A): 31.6007 26.0670 31.3345 REMARK 3 T TENSOR REMARK 3 T11: 0.1732 T22: 0.2189 REMARK 3 T33: 0.1641 T12: -0.0446 REMARK 3 T13: -0.0046 T23: 0.0422 REMARK 3 L TENSOR REMARK 3 L11: 2.6960 L22: 0.6036 REMARK 3 L33: 6.9730 L12: -0.4689 REMARK 3 L13: -2.7313 L23: 1.9568 REMARK 3 S TENSOR REMARK 3 S11: -0.1140 S12: -0.5279 S13: -0.2488 REMARK 3 S21: 0.2699 S22: -0.2451 S23: -0.0095 REMARK 3 S31: 0.3917 S32: -0.3765 S33: 0.3591 REMARK 3 REMARK 3 TLS GROUP : 11 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 248 A 290 REMARK 3 ORIGIN FOR THE GROUP (A): 49.1872 32.2220 13.8129 REMARK 3 T TENSOR REMARK 3 T11: 0.1872 T22: 0.2339 REMARK 3 T33: 0.1182 T12: -0.0236 REMARK 3 T13: -0.0235 T23: -0.0194 REMARK 3 L TENSOR REMARK 3 L11: 2.8851 L22: 1.7892 REMARK 3 L33: 1.5696 L12: 0.5029 REMARK 3 L13: -1.7214 L23: -1.0628 REMARK 3 S TENSOR REMARK 3 S11: -0.0389 S12: 0.0298 S13: -0.0001 REMARK 3 S21: -0.0535 S22: -0.0092 S23: 0.0082 REMARK 3 S31: 0.0848 S32: 0.0328 S33: 0.0481 REMARK 3 REMARK 3 TLS GROUP : 12 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 291 A 358 REMARK 3 ORIGIN FOR THE GROUP (A): 37.6024 31.7720 13.4729 REMARK 3 T TENSOR REMARK 3 T11: 0.1825 T22: 0.1417 REMARK 3 T33: 0.0678 T12: -0.0508 REMARK 3 T13: -0.0577 T23: -0.0447 REMARK 3 L TENSOR REMARK 3 L11: 6.2733 L22: 0.7677 REMARK 3 L33: 1.3979 L12: 0.5580 REMARK 3 L13: -2.1341 L23: -0.3947 REMARK 3 S TENSOR REMARK 3 S11: 0.0143 S12: 0.4159 S13: 0.1126 REMARK 3 S21: -0.0728 S22: -0.0152 S23: 0.1339 REMARK 3 S31: 0.0980 S32: -0.1181 S33: 0.0008 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 2OEW COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 08-JAN-07. REMARK 100 THE DEPOSITION ID IS D_1000041048. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 09-OCT-06 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS IV REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 15487 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.550 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.5 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.05300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 19.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.55 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.64 REMARK 200 COMPLETENESS FOR SHELL (%) : 79.3 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.24000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 1ZB1 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 57.38 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.89 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 10% PEG 20000, 0.1M NAMES, PH 6.5, REMARK 280 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 286K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 60.33900 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 31.62150 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 60.33900 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 31.62150 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -20 REMARK 465 HIS A -19 REMARK 465 HIS A -18 REMARK 465 HIS A -17 REMARK 465 HIS A -16 REMARK 465 HIS A -15 REMARK 465 HIS A -14 REMARK 465 HIS A -13 REMARK 465 HIS A -12 REMARK 465 HIS A -11 REMARK 465 HIS A -10 REMARK 465 SER A -9 REMARK 465 GLY A -8 REMARK 465 GLN A -7 REMARK 465 ASN A -6 REMARK 465 LEU A -5 REMARK 465 TYR A -4 REMARK 465 PHE A -3 REMARK 465 GLN A -2 REMARK 465 GLY A -1 REMARK 465 HIS A 0 REMARK 465 VAL A 359 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 45 CG GLU A 45 CD 0.114 REMARK 500 GLU A 45 CD GLU A 45 OE1 0.189 REMARK 500 GLU A 45 CD GLU A 45 OE2 0.155 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 2 -9.05 -162.78 REMARK 500 THR A 3 35.24 -94.36 REMARK 500 ALA A 18 -70.64 -51.53 REMARK 500 GLN A 26 79.23 -61.28 REMARK 500 GLN A 27 -97.70 -140.34 REMARK 500 PRO A 30 -82.27 -85.95 REMARK 500 GLU A 34 -140.33 -166.14 REMARK 500 GLN A 36 -70.73 -47.49 REMARK 500 PHE A 82 -84.67 -102.04 REMARK 500 PRO A 83 40.90 -88.73 REMARK 500 SER A 85 -29.68 -146.03 REMARK 500 GLU A 86 103.55 31.85 REMARK 500 GLN A 88 -40.16 -149.58 REMARK 500 ILE A 89 92.27 0.01 REMARK 500 LEU A 91 111.31 -166.34 REMARK 500 ASP A 141 39.47 -91.11 REMARK 500 ASP A 206 7.31 -66.65 REMARK 500 ASP A 292 -57.15 -23.06 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2OEV RELATED DB: PDB REMARK 900 STRUCTURE OF ALIX/AIP1 BRO1-V DOMAINS REMARK 900 RELATED ID: 2OEX RELATED DB: PDB REMARK 900 STRUCTURE OF ALIX/AIP1 V DOMAIN DBREF 2OEW A 1 359 UNP Q8WUM4 PDC6I_HUMAN 1 359 SEQADV 2OEW MET A -20 UNP Q8WUM4 INITIATING METHIONINE SEQADV 2OEW HIS A -19 UNP Q8WUM4 EXPRESSION TAG SEQADV 2OEW HIS A -18 UNP Q8WUM4 EXPRESSION TAG SEQADV 2OEW HIS A -17 UNP Q8WUM4 EXPRESSION TAG SEQADV 2OEW HIS A -16 UNP Q8WUM4 EXPRESSION TAG SEQADV 2OEW HIS A -15 UNP Q8WUM4 EXPRESSION TAG SEQADV 2OEW HIS A -14 UNP Q8WUM4 EXPRESSION TAG SEQADV 2OEW HIS A -13 UNP Q8WUM4 EXPRESSION TAG SEQADV 2OEW HIS A -12 UNP Q8WUM4 EXPRESSION TAG SEQADV 2OEW HIS A -11 UNP Q8WUM4 EXPRESSION TAG SEQADV 2OEW HIS A -10 UNP Q8WUM4 EXPRESSION TAG SEQADV 2OEW SER A -9 UNP Q8WUM4 CLONING ARTIFACT SEQADV 2OEW GLY A -8 UNP Q8WUM4 CLONING ARTIFACT SEQADV 2OEW GLN A -7 UNP Q8WUM4 CLONING ARTIFACT SEQADV 2OEW ASN A -6 UNP Q8WUM4 CLONING ARTIFACT SEQADV 2OEW LEU A -5 UNP Q8WUM4 CLONING ARTIFACT SEQADV 2OEW TYR A -4 UNP Q8WUM4 CLONING ARTIFACT SEQADV 2OEW PHE A -3 UNP Q8WUM4 CLONING ARTIFACT SEQADV 2OEW GLN A -2 UNP Q8WUM4 CLONING ARTIFACT SEQADV 2OEW GLY A -1 UNP Q8WUM4 CLONING ARTIFACT SEQADV 2OEW HIS A 0 UNP Q8WUM4 CLONING ARTIFACT SEQRES 1 A 380 MET HIS HIS HIS HIS HIS HIS HIS HIS HIS HIS SER GLY SEQRES 2 A 380 GLN ASN LEU TYR PHE GLN GLY HIS MET ALA THR PHE ILE SEQRES 3 A 380 SER VAL GLN LEU LYS LYS THR SER GLU VAL ASP LEU ALA SEQRES 4 A 380 LYS PRO LEU VAL LYS PHE ILE GLN GLN THR TYR PRO SER SEQRES 5 A 380 GLY GLY GLU GLU GLN ALA GLN TYR CYS ARG ALA ALA GLU SEQRES 6 A 380 GLU LEU SER LYS LEU ARG ARG ALA ALA VAL GLY ARG PRO SEQRES 7 A 380 LEU ASP LYS HIS GLU GLY ALA LEU GLU THR LEU LEU ARG SEQRES 8 A 380 TYR TYR ASP GLN ILE CYS SER ILE GLU PRO LYS PHE PRO SEQRES 9 A 380 PHE SER GLU ASN GLN ILE CYS LEU THR PHE THR TRP LYS SEQRES 10 A 380 ASP ALA PHE ASP LYS GLY SER LEU PHE GLY GLY SER VAL SEQRES 11 A 380 LYS LEU ALA LEU ALA SER LEU GLY TYR GLU LYS SER CYS SEQRES 12 A 380 VAL LEU PHE ASN CYS ALA ALA LEU ALA SER GLN ILE ALA SEQRES 13 A 380 ALA GLU GLN ASN LEU ASP ASN ASP GLU GLY LEU LYS ILE SEQRES 14 A 380 ALA ALA LYS HIS TYR GLN PHE ALA SER GLY ALA PHE LEU SEQRES 15 A 380 HIS ILE LYS GLU THR VAL LEU SER ALA LEU SER ARG GLU SEQRES 16 A 380 PRO THR VAL ASP ILE SER PRO ASP THR VAL GLY THR LEU SEQRES 17 A 380 SER LEU ILE MET LEU ALA GLN ALA GLN GLU VAL PHE PHE SEQRES 18 A 380 LEU LYS ALA THR ARG ASP LYS MET LYS ASP ALA ILE ILE SEQRES 19 A 380 ALA LYS LEU ALA ASN GLN ALA ALA ASP TYR PHE GLY ASP SEQRES 20 A 380 ALA PHE LYS GLN CYS GLN TYR LYS ASP THR LEU PRO LYS SEQRES 21 A 380 GLU VAL PHE PRO VAL LEU ALA ALA LYS HIS CYS ILE MET SEQRES 22 A 380 GLN ALA ASN ALA GLU TYR HIS GLN SER ILE LEU ALA LYS SEQRES 23 A 380 GLN GLN LYS LYS PHE GLY GLU GLU ILE ALA ARG LEU GLN SEQRES 24 A 380 HIS ALA ALA GLU LEU ILE LYS THR VAL ALA SER ARG TYR SEQRES 25 A 380 ASP GLU TYR VAL ASN VAL LYS ASP PHE SER ASP LYS ILE SEQRES 26 A 380 ASN ARG ALA LEU ALA ALA ALA LYS LYS ASP ASN ASP PHE SEQRES 27 A 380 ILE TYR HIS ASP ARG VAL PRO ASP LEU LYS ASP LEU ASP SEQRES 28 A 380 PRO ILE GLY LYS ALA THR LEU VAL LYS SER THR PRO VAL SEQRES 29 A 380 ASN VAL PRO ILE SER GLN LYS PHE THR ASP LEU PHE GLU SEQRES 30 A 380 LYS MET VAL FORMUL 2 HOH *79(H2 O) HELIX 1 1 LEU A 17 GLN A 26 1 10 HELIX 2 2 GLU A 35 GLY A 55 1 21 HELIX 3 3 HIS A 61 SER A 77 1 17 HELIX 4 4 SER A 115 GLU A 137 1 23 HELIX 5 5 ASN A 142 LEU A 171 1 30 HELIX 6 6 THR A 176 ILE A 179 5 4 HELIX 7 7 SER A 180 ASP A 206 1 27 HELIX 8 8 LYS A 209 GLN A 232 1 24 HELIX 9 9 GLU A 240 GLN A 267 1 28 HELIX 10 10 LYS A 269 ASP A 292 1 24 HELIX 11 11 VAL A 297 ILE A 318 1 22 HELIX 12 12 ASP A 325 LEU A 329 5 5 SHEET 1 A 2 PHE A 93 LYS A 96 0 SHEET 2 A 2 LYS A 110 LEU A 113 -1 O LEU A 113 N PHE A 93 CISPEP 1 VAL A 345 PRO A 346 0 11.26 CRYST1 120.678 63.243 76.384 90.00 122.15 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008287 0.000000 0.005208 0.00000 SCALE2 0.000000 0.015812 0.000000 0.00000 SCALE3 0.000000 0.000000 0.015463 0.00000