HEADER STRUCTURAL GENOMICS, UNKNOWN FUNCTION 02-JAN-07 2OEZ TITLE PROTEIN OF UNKNOWN FUNCTION (DUF1342) FROM VIBRIO PARAHAEMOLYTICUS COMPND MOL_ID: 1; COMPND 2 MOLECULE: UPF0289 PROTEIN VP2528; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: RESIDUES 2-245; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: VIBRIO PARAHAEMOLYTICUS; SOURCE 3 ORGANISM_TAXID: 223926; SOURCE 4 STRAIN: RIMD 2210633; SOURCE 5 GENE: VP2528; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PMCSG7 KEYWDS IMMUNOGLOBULIN FOLD, ALPHA-STRUCTURE, STRUCTURAL GENOMICS, PSI-2, KEYWDS 2 PROTEIN STRUCTURE INITIATIVE, MIDWEST CENTER FOR STRUCTURAL KEYWDS 3 GENOMICS, MCSG, UNKNOWN FUNCTION EXPDTA X-RAY DIFFRACTION AUTHOR Y.KIM,L.VOLKART,J.ABDULLAH,A.JOACHIMIAK,MIDWEST CENTER FOR STRUCTURAL AUTHOR 2 GENOMICS (MCSG) REVDAT 5 27-DEC-23 2OEZ 1 SEQADV LINK REVDAT 4 18-OCT-17 2OEZ 1 REMARK REVDAT 3 13-JUL-11 2OEZ 1 VERSN REVDAT 2 24-FEB-09 2OEZ 1 VERSN REVDAT 1 30-JAN-07 2OEZ 0 JRNL AUTH Y.KIM,L.VOLKART,J.ABDULLAH,A.JOACHIMIAK JRNL TITL CRYSTAL STRUCTURE OF THE PROTEIN OF UNKNOWN FUNCTION VP2528 JRNL TITL 2 FROM VIBRIO PARAHAEMOLYTICUS JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.97 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0000 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD WITH PHASES REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.97 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 49.25 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 93.7 REMARK 3 NUMBER OF REFLECTIONS : 43897 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.216 REMARK 3 R VALUE (WORKING SET) : 0.210 REMARK 3 FREE R VALUE : 0.267 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.000 REMARK 3 FREE R VALUE TEST SET COUNT : 4866 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.97 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.02 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2009 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.2870 REMARK 3 BIN FREE R VALUE SET COUNT : 201 REMARK 3 BIN FREE R VALUE : 0.3540 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3988 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 424 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 58.21 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.83000 REMARK 3 B22 (A**2) : 1.08000 REMARK 3 B33 (A**2) : -2.91000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.198 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.187 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.142 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 9.209 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.956 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.927 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4662 ; 0.018 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6346 ; 1.619 ; 1.929 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 588 ; 5.760 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 267 ;39.053 ;23.745 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 851 ;20.205 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 41 ;20.550 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 634 ; 0.123 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3775 ; 0.008 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 2350 ; 0.239 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 374 ; 0.211 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 71 ; 0.273 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 19 ; 0.263 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2832 ; 1.155 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4450 ; 1.872 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2055 ; 2.857 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1896 ; 4.165 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 245 REMARK 3 ORIGIN FOR THE GROUP (A): 40.8949 45.8387 47.9063 REMARK 3 T TENSOR REMARK 3 T11: -0.1944 T22: -0.2239 REMARK 3 T33: -0.2718 T12: 0.0774 REMARK 3 T13: -0.0486 T23: 0.0188 REMARK 3 L TENSOR REMARK 3 L11: 1.0273 L22: 1.0101 REMARK 3 L33: 3.2862 L12: -0.2481 REMARK 3 L13: 0.3678 L23: -0.2128 REMARK 3 S TENSOR REMARK 3 S11: -0.2329 S12: -0.1305 S13: 0.0994 REMARK 3 S21: 0.1100 S22: 0.1879 S23: -0.0223 REMARK 3 S31: -0.0642 S32: 0.0559 S33: 0.0450 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 2 B 245 REMARK 3 ORIGIN FOR THE GROUP (A): 65.3117 24.6583 57.7285 REMARK 3 T TENSOR REMARK 3 T11: -0.0146 T22: -0.0780 REMARK 3 T33: -0.2255 T12: 0.1917 REMARK 3 T13: -0.0733 T23: -0.0506 REMARK 3 L TENSOR REMARK 3 L11: 1.1939 L22: 0.9960 REMARK 3 L33: 1.2861 L12: -0.4167 REMARK 3 L13: 0.8831 L23: -0.6602 REMARK 3 S TENSOR REMARK 3 S11: -0.2727 S12: -0.4698 S13: 0.1731 REMARK 3 S21: 0.3257 S22: 0.1971 S23: -0.0093 REMARK 3 S31: -0.1596 S32: -0.2073 S33: 0.0756 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 2OEZ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 02-JAN-07. REMARK 100 THE DEPOSITION ID IS D_1000041051. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-DEC-06 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97929 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 49398 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.970 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 93.0 REMARK 200 DATA REDUNDANCY : 10.60 REMARK 200 R MERGE (I) : 0.10100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.97 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.04 REMARK 200 COMPLETENESS FOR SHELL (%) : 58.5 REMARK 200 DATA REDUNDANCY IN SHELL : 5.20 REMARK 200 R MERGE FOR SHELL (I) : 0.63100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: HKL-3000, SHELXCD, SHELXD, MLPHARE, SOLVE, RESOLVE, REMARK 200 PHENIX REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 60.58 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.12 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M HEPES PH 7.5, 2.0 M AMMONIUM REMARK 280 SULFATE, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 31.87950 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 73.08350 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 38.78350 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 73.08350 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 31.87950 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 38.78350 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3800 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 25220 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -24.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A -1 REMARK 465 ASN A 0 REMARK 465 PRO A 127 REMARK 465 GLY A 128 REMARK 465 GLY A 129 REMARK 465 SER A 130 REMARK 465 SER B -1 REMARK 465 ASN B 0 REMARK 465 ALA B 1 REMARK 465 SER B 130 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 ND2 ASN B 154 O HOH B 335 1.96 REMARK 500 OE1 GLU B 61 O HOH B 410 2.10 REMARK 500 CE1 PHE A 6 O HOH B 399 2.12 REMARK 500 O GLY A 216 O HOH A 444 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 NH2 ARG B 74 O LYS B 207 4556 2.10 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLY B 209 C GLY B 209 O 0.221 REMARK 500 GLY B 209 C VAL B 210 N 0.217 REMARK 500 ALA B 227 C ALA B 227 O 0.120 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 201 NE - CZ - NH2 ANGL. DEV. = -3.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 106 144.04 -39.32 REMARK 500 GLU A 196 19.54 51.61 REMARK 500 ALA A 197 150.68 -49.95 REMARK 500 LYS A 218 -128.57 54.32 REMARK 500 LYS A 218 -126.07 58.28 REMARK 500 ASN A 230 -1.31 -144.86 REMARK 500 ASN B 36 -8.04 -54.20 REMARK 500 GLU B 54 26.21 -75.28 REMARK 500 GLU B 54 30.40 -75.28 REMARK 500 GLN B 55 -12.94 -153.19 REMARK 500 GLN B 55 -39.06 -146.77 REMARK 500 ASP B 83 99.96 -63.16 REMARK 500 SER B 192 -158.99 -151.19 REMARK 500 LYS B 218 -103.48 57.92 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: APC86621.1 RELATED DB: TARGETDB DBREF 2OEZ A 2 245 UNP Q87LT3 Y2528_VIBPA 2 245 DBREF 2OEZ B 2 245 UNP Q87LT3 Y2528_VIBPA 2 245 SEQADV 2OEZ SER A -1 UNP Q87LT3 CLONING ARTIFACT SEQADV 2OEZ ASN A 0 UNP Q87LT3 CLONING ARTIFACT SEQADV 2OEZ ALA A 1 UNP Q87LT3 CLONING ARTIFACT SEQADV 2OEZ MSE A 49 UNP Q87LT3 MET 49 MODIFIED RESIDUE SEQADV 2OEZ MSE A 102 UNP Q87LT3 MET 102 MODIFIED RESIDUE SEQADV 2OEZ MSE A 206 UNP Q87LT3 MET 206 MODIFIED RESIDUE SEQADV 2OEZ MSE A 213 UNP Q87LT3 MET 213 MODIFIED RESIDUE SEQADV 2OEZ MSE A 226 UNP Q87LT3 MET 226 MODIFIED RESIDUE SEQADV 2OEZ SER B -1 UNP Q87LT3 CLONING ARTIFACT SEQADV 2OEZ ASN B 0 UNP Q87LT3 CLONING ARTIFACT SEQADV 2OEZ ALA B 1 UNP Q87LT3 CLONING ARTIFACT SEQADV 2OEZ MSE B 49 UNP Q87LT3 MET 49 MODIFIED RESIDUE SEQADV 2OEZ MSE B 102 UNP Q87LT3 MET 102 MODIFIED RESIDUE SEQADV 2OEZ MSE B 206 UNP Q87LT3 MET 206 MODIFIED RESIDUE SEQADV 2OEZ MSE B 213 UNP Q87LT3 MET 213 MODIFIED RESIDUE SEQADV 2OEZ MSE B 226 UNP Q87LT3 MET 226 MODIFIED RESIDUE SEQRES 1 A 247 SER ASN ALA THR THR HIS LYS PHE GLU HIS PRO LEU ASN SEQRES 2 A 247 GLU LYS THR ARG ILE TYR LEU ARG VAL GLU SER LEU LEU SEQRES 3 A 247 ARG GLN ALA HIS LEU ALA SER GLY PHE ALA ASP ASN HIS SEQRES 4 A 247 GLN TYR GLN LEU PHE PHE ARG ALA LEU PHE ASP MSE VAL SEQRES 5 A 247 GLU ILE PHE GLU GLN ILE GLN LEU LYS SER GLU LEU ALA SEQRES 6 A 247 LYS ASP LEU GLU LYS GLN ARG LEU SER TYR ARG HIS TRP SEQRES 7 A 247 LEU ASN VAL GLU GLY VAL ASP GLN GLU ALA LEU ASN SER SEQRES 8 A 247 LEU LEU ASN GLU ILE ASP VAL VAL HIS SER GLN LEU MSE SEQRES 9 A 247 GLY ALA GLU ARG PHE GLY GLN ALA LEU LYS GLU ASP ARG SEQRES 10 A 247 PHE LEU SER SER ILE ARG GLN ARG PHE ASN LEU PRO GLY SEQRES 11 A 247 GLY SER CYS CYS PHE ASP LEU PRO ALA LEU HIS TYR TRP SEQRES 12 A 247 LEU HIS LEU PRO ILE GLU ARG LYS LYS HIS ASP ALA ASN SEQRES 13 A 247 GLN TRP GLN LYS SER LEU LYS PRO LEU SER ASP ALA LEU SEQRES 14 A 247 THR LEU TRP LEU LYS LEU ALA ARG GLU THR GLY HIS PHE SEQRES 15 A 247 LYS ALA GLN ILE ALA ARG ALA GLY PHE PHE GLN SER ASP SEQRES 16 A 247 ALA ASP GLU ALA ASN ILE LEU ARG LEU HIS ILE PRO MSE SEQRES 17 A 247 LYS TYR GLY VAL TYR PRO MSE ILE SER GLY HIS LYS ASN SEQRES 18 A 247 ARG PHE ALA ILE LYS PHE MSE ALA PHE GLU ASN GLY GLN SEQRES 19 A 247 ALA CYS SER GLN ASP VAL GLU PHE GLU LEU ALA VAL CYS SEQRES 1 B 247 SER ASN ALA THR THR HIS LYS PHE GLU HIS PRO LEU ASN SEQRES 2 B 247 GLU LYS THR ARG ILE TYR LEU ARG VAL GLU SER LEU LEU SEQRES 3 B 247 ARG GLN ALA HIS LEU ALA SER GLY PHE ALA ASP ASN HIS SEQRES 4 B 247 GLN TYR GLN LEU PHE PHE ARG ALA LEU PHE ASP MSE VAL SEQRES 5 B 247 GLU ILE PHE GLU GLN ILE GLN LEU LYS SER GLU LEU ALA SEQRES 6 B 247 LYS ASP LEU GLU LYS GLN ARG LEU SER TYR ARG HIS TRP SEQRES 7 B 247 LEU ASN VAL GLU GLY VAL ASP GLN GLU ALA LEU ASN SER SEQRES 8 B 247 LEU LEU ASN GLU ILE ASP VAL VAL HIS SER GLN LEU MSE SEQRES 9 B 247 GLY ALA GLU ARG PHE GLY GLN ALA LEU LYS GLU ASP ARG SEQRES 10 B 247 PHE LEU SER SER ILE ARG GLN ARG PHE ASN LEU PRO GLY SEQRES 11 B 247 GLY SER CYS CYS PHE ASP LEU PRO ALA LEU HIS TYR TRP SEQRES 12 B 247 LEU HIS LEU PRO ILE GLU ARG LYS LYS HIS ASP ALA ASN SEQRES 13 B 247 GLN TRP GLN LYS SER LEU LYS PRO LEU SER ASP ALA LEU SEQRES 14 B 247 THR LEU TRP LEU LYS LEU ALA ARG GLU THR GLY HIS PHE SEQRES 15 B 247 LYS ALA GLN ILE ALA ARG ALA GLY PHE PHE GLN SER ASP SEQRES 16 B 247 ALA ASP GLU ALA ASN ILE LEU ARG LEU HIS ILE PRO MSE SEQRES 17 B 247 LYS TYR GLY VAL TYR PRO MSE ILE SER GLY HIS LYS ASN SEQRES 18 B 247 ARG PHE ALA ILE LYS PHE MSE ALA PHE GLU ASN GLY GLN SEQRES 19 B 247 ALA CYS SER GLN ASP VAL GLU PHE GLU LEU ALA VAL CYS MODRES 2OEZ MSE A 49 MET SELENOMETHIONINE MODRES 2OEZ MSE A 102 MET SELENOMETHIONINE MODRES 2OEZ MSE A 206 MET SELENOMETHIONINE MODRES 2OEZ MSE A 213 MET SELENOMETHIONINE MODRES 2OEZ MSE A 226 MET SELENOMETHIONINE MODRES 2OEZ MSE B 49 MET SELENOMETHIONINE MODRES 2OEZ MSE B 102 MET SELENOMETHIONINE MODRES 2OEZ MSE B 206 MET SELENOMETHIONINE MODRES 2OEZ MSE B 213 MET SELENOMETHIONINE MODRES 2OEZ MSE B 226 MET SELENOMETHIONINE HET MSE A 49 8 HET MSE A 102 8 HET MSE A 206 8 HET MSE A 213 16 HET MSE A 226 8 HET MSE B 49 8 HET MSE B 102 8 HET MSE B 206 8 HET MSE B 213 16 HET MSE B 226 8 HETNAM MSE SELENOMETHIONINE FORMUL 1 MSE 10(C5 H11 N O2 SE) FORMUL 3 HOH *424(H2 O) HELIX 1 1 ASN A 11 SER A 31 1 21 HELIX 2 2 HIS A 37 ILE A 56 1 20 HELIX 3 3 GLN A 57 HIS A 75 1 19 HELIX 4 4 ASP A 83 ALA A 104 1 22 HELIX 5 5 GLY A 108 ASP A 114 1 7 HELIX 6 6 ASP A 114 LEU A 126 1 13 HELIX 7 7 CYS A 131 ASP A 134 5 4 HELIX 8 8 LEU A 135 HIS A 143 1 9 HELIX 9 9 PRO A 145 SER A 159 1 15 HELIX 10 10 LEU A 160 THR A 177 1 18 HELIX 11 11 ASN B 11 SER B 31 1 21 HELIX 12 12 HIS B 37 GLU B 54 1 18 HELIX 13 13 GLN B 57 TYR B 73 1 17 HELIX 14 14 ARG B 74 TRP B 76 5 3 HELIX 15 15 ASP B 83 ALA B 104 1 22 HELIX 16 16 GLY B 108 GLU B 113 1 6 HELIX 17 17 ASP B 114 ASN B 125 1 12 HELIX 18 18 LEU B 135 HIS B 143 1 9 HELIX 19 19 PRO B 145 SER B 159 1 15 HELIX 20 20 LEU B 160 GLY B 178 1 19 SHEET 1 A 4 THR A 3 PRO A 9 0 SHEET 2 A 4 ILE A 199 PRO A 205 -1 O ILE A 204 N HIS A 4 SHEET 3 A 4 VAL A 238 CYS A 245 -1 O ALA A 243 N ARG A 201 SHEET 4 A 4 LYS A 181 ALA A 185 -1 N GLN A 183 O PHE A 240 SHEET 1 B 3 PHE A 189 ASP A 193 0 SHEET 2 B 3 ARG A 220 ALA A 227 -1 O ILE A 223 N PHE A 190 SHEET 3 B 3 VAL A 210 HIS A 217 -1 N MSE A 213 O LYS A 224 SHEET 1 C 4 THR B 3 PRO B 9 0 SHEET 2 C 4 ILE B 199 PRO B 205 -1 O ILE B 204 N HIS B 4 SHEET 3 C 4 VAL B 238 CYS B 245 -1 O ALA B 243 N ARG B 201 SHEET 4 C 4 LYS B 181 ALA B 185 -1 N GLN B 183 O PHE B 240 SHEET 1 D 3 PHE B 189 ASP B 193 0 SHEET 2 D 3 ARG B 220 ALA B 227 -1 O ILE B 223 N PHE B 190 SHEET 3 D 3 VAL B 210 HIS B 217 -1 N MSE B 213 O LYS B 224 LINK C ASP A 48 N MSE A 49 1555 1555 1.33 LINK C MSE A 49 N VAL A 50 1555 1555 1.33 LINK C LEU A 101 N MSE A 102 1555 1555 1.34 LINK C MSE A 102 N GLY A 103 1555 1555 1.34 LINK C PRO A 205 N MSE A 206 1555 1555 1.33 LINK C MSE A 206 N LYS A 207 1555 1555 1.34 LINK C PRO A 212 N AMSE A 213 1555 1555 1.33 LINK C PRO A 212 N BMSE A 213 1555 1555 1.33 LINK C AMSE A 213 N ILE A 214 1555 1555 1.33 LINK C BMSE A 213 N ILE A 214 1555 1555 1.31 LINK C PHE A 225 N MSE A 226 1555 1555 1.32 LINK C MSE A 226 N ALA A 227 1555 1555 1.32 LINK C ASP B 48 N MSE B 49 1555 1555 1.34 LINK C MSE B 49 N VAL B 50 1555 1555 1.34 LINK C LEU B 101 N MSE B 102 1555 1555 1.34 LINK C MSE B 102 N GLY B 103 1555 1555 1.33 LINK C PRO B 205 N MSE B 206 1555 1555 1.35 LINK C MSE B 206 N LYS B 207 1555 1555 1.33 LINK C PRO B 212 N BMSE B 213 1555 1555 1.33 LINK C PRO B 212 N AMSE B 213 1555 1555 1.33 LINK C BMSE B 213 N ILE B 214 1555 1555 1.34 LINK C AMSE B 213 N ILE B 214 1555 1555 1.33 LINK C PHE B 225 N MSE B 226 1555 1555 1.36 LINK C MSE B 226 N ALA B 227 1555 1555 1.34 CRYST1 63.759 77.567 146.167 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015684 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012892 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006841 0.00000