HEADER 3-METHYLADENINE DNA GLYCOSYLASE I/DNA 03-JAN-07 2OFI TITLE CRYSTAL STRUCTURE OF 3-METHYLADENINE DNA GLYCOSYLASE I (TAG) BOUND TO TITLE 2 DNA/3MA COMPND MOL_ID: 1; COMPND 2 MOLECULE: 5'-D(*CP*GP*GP*AP*CP*TP*(3DR)P*AP*CP*GP*GP*G)-3'; COMPND 3 CHAIN: C; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: 5'-D(*CP*CP*GP*TP*TP*AP*GP*TP*CP*CP*GP*C)-3'; COMPND 7 CHAIN: B; COMPND 8 ENGINEERED: YES; COMPND 9 MOL_ID: 3; COMPND 10 MOLECULE: 3-METHYLADENINE DNA GLYCOSYLASE I, CONSTITUTIVE; COMPND 11 CHAIN: A; COMPND 12 SYNONYM: 3-METHYLADENINE DNA GLYCOSYLASE I; COMPND 13 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 MOL_ID: 2; SOURCE 4 SYNTHETIC: YES; SOURCE 5 MOL_ID: 3; SOURCE 6 ORGANISM_SCIENTIFIC: SALMONELLA TYPHI; SOURCE 7 ORGANISM_TAXID: 601; SOURCE 8 GENE: TAG; SOURCE 9 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 10 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 11 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 12 EXPRESSION_SYSTEM_PLASMID: PET19B KEYWDS 3-METHYLADENINE, DNA REPAIR, GLYCOSYLASE, BASE EXCISION, HELIX- KEYWDS 2 HAIRPIN-HELIX, 3-METHYLADENINE DNA GLYCOSYLASE I-DNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR A.H.METZ,T.HOLLIS,B.F.EICHMAN REVDAT 4 27-DEC-23 2OFI 1 REMARK SEQADV LINK REVDAT 3 13-JUL-11 2OFI 1 VERSN REVDAT 2 24-FEB-09 2OFI 1 VERSN REVDAT 1 15-MAY-07 2OFI 0 JRNL AUTH A.H.METZ,T.HOLLIS,B.F.EICHMAN JRNL TITL DNA DAMAGE RECOGNITION AND REPAIR BY 3-METHYLADENINE DNA JRNL TITL 2 GLYCOSYLASE I (TAG). JRNL REF EMBO J. V. 26 2411 2007 JRNL REFN ISSN 0261-4189 JRNL PMID 17410210 JRNL DOI 10.1038/SJ.EMBOJ.7601649 REMARK 2 REMARK 2 RESOLUTION. 1.85 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD WITH PHASES REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.85 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 26778 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.177 REMARK 3 R VALUE (WORKING SET) : 0.176 REMARK 3 FREE R VALUE : 0.198 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1420 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 10 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.85 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.95 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3856 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.75 REMARK 3 BIN R VALUE (WORKING SET) : 0.2000 REMARK 3 BIN FREE R VALUE SET COUNT : 199 REMARK 3 BIN FREE R VALUE : 0.2390 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1445 REMARK 3 NUCLEIC ACID ATOMS : 476 REMARK 3 HETEROGEN ATOMS : 13 REMARK 3 SOLVENT ATOMS : 159 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 28.10 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 34.36 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.01000 REMARK 3 B22 (A**2) : 0.01000 REMARK 3 B33 (A**2) : -0.01000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.113 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.105 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.069 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.423 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.963 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.955 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2068 ; 0.018 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2898 ; 1.868 ; 2.257 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 183 ; 5.194 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 69 ;35.463 ;23.623 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 249 ;14.802 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 10 ;17.152 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 313 ; 0.113 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1399 ; 0.010 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 890 ; 0.200 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1356 ; 0.309 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 139 ; 0.134 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): 1 ; 0.266 ; 0.200 REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 30 ; 0.129 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 23 ; 0.110 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 916 ; 1.027 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1464 ; 1.781 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1294 ; 2.662 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1434 ; 3.735 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 5 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 3 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 184 REMARK 3 RESIDUE RANGE : A 302 A 302 REMARK 3 RESIDUE RANGE : A 301 A 301 REMARK 3 ORIGIN FOR THE GROUP (A): 0.2607 39.2014 44.4867 REMARK 3 T TENSOR REMARK 3 T11: -0.0447 T22: -0.0947 REMARK 3 T33: -0.0594 T12: -0.0023 REMARK 3 T13: -0.0080 T23: -0.0054 REMARK 3 L TENSOR REMARK 3 L11: 1.4089 L22: 1.5855 REMARK 3 L33: 1.1416 L12: 0.4856 REMARK 3 L13: 0.4102 L23: 0.3460 REMARK 3 S TENSOR REMARK 3 S11: -0.0656 S12: 0.0333 S13: -0.0202 REMARK 3 S21: -0.1294 S22: 0.0498 S23: -0.0163 REMARK 3 S31: -0.0632 S32: 0.0495 S33: 0.0158 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 1 B 6 REMARK 3 RESIDUE RANGE : C 6 C 12 REMARK 3 ORIGIN FOR THE GROUP (A): -3.3918 22.9521 66.7230 REMARK 3 T TENSOR REMARK 3 T11: 0.0486 T22: 0.0555 REMARK 3 T33: -0.0729 T12: -0.1405 REMARK 3 T13: 0.2712 T23: -0.0085 REMARK 3 L TENSOR REMARK 3 L11: 5.5603 L22: 7.6087 REMARK 3 L33: 14.5736 L12: 5.9924 REMARK 3 L13: -7.1330 L23: -8.4732 REMARK 3 S TENSOR REMARK 3 S11: -1.2156 S12: 0.6243 S13: -0.3053 REMARK 3 S21: -1.0795 S22: 0.4198 S23: -0.1156 REMARK 3 S31: 1.7472 S32: -1.0122 S33: 0.7958 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 8 B 12 REMARK 3 RESIDUE RANGE : C 1 C 4 REMARK 3 ORIGIN FOR THE GROUP (A): 11.1771 23.2714 52.9345 REMARK 3 T TENSOR REMARK 3 T11: -0.0108 T22: -0.0054 REMARK 3 T33: 0.0586 T12: 0.0037 REMARK 3 T13: -0.0062 T23: -0.0114 REMARK 3 L TENSOR REMARK 3 L11: 2.4780 L22: 1.4483 REMARK 3 L33: 3.2479 L12: -0.6856 REMARK 3 L13: 1.5358 L23: -1.1383 REMARK 3 S TENSOR REMARK 3 S11: -0.0870 S12: 0.0375 S13: -0.1601 REMARK 3 S21: 0.1238 S22: -0.0345 S23: -0.0452 REMARK 3 S31: 0.0235 S32: 0.0020 S33: 0.1215 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 7 B 7 REMARK 3 ORIGIN FOR THE GROUP (A): -2.0195 25.2885 51.5295 REMARK 3 T TENSOR REMARK 3 T11: -0.0023 T22: 0.0013 REMARK 3 T33: 0.0055 T12: -0.0108 REMARK 3 T13: 0.0114 T23: -0.0034 REMARK 3 L TENSOR REMARK 3 L11: 56.6938 L22: 65.8232 REMARK 3 L33: 77.6847 L12: 23.0752 REMARK 3 L13: 58.5635 L23: -7.3092 REMARK 3 S TENSOR REMARK 3 S11: 0.8613 S12: -1.6050 S13: -0.0834 REMARK 3 S21: -1.3532 S22: 1.4957 S23: 0.1428 REMARK 3 S31: 0.8839 S32: -2.5872 S33: -2.3570 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 5 C 5 REMARK 3 ORIGIN FOR THE GROUP (A): 5.3952 30.6383 59.7261 REMARK 3 T TENSOR REMARK 3 T11: 0.0254 T22: -0.0029 REMARK 3 T33: -0.0021 T12: 0.0051 REMARK 3 T13: 0.0003 T23: 0.0427 REMARK 3 L TENSOR REMARK 3 L11: 0.9122 L22: 15.1879 REMARK 3 L33: 22.7490 L12: 0.7449 REMARK 3 L13: -0.2015 L23: 18.0294 REMARK 3 S TENSOR REMARK 3 S11: 0.0227 S12: 0.0349 S13: -0.8082 REMARK 3 S21: 0.3660 S22: 0.3099 S23: -0.0880 REMARK 3 S31: 0.5739 S32: 0.5128 S33: -0.3326 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2OFI COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 04-JAN-07. REMARK 100 THE DEPOSITION ID IS D_1000041070. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 09-DEC-05 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 22-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9793 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MAR SCANNER 345 MM PLATE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 28261 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.850 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 6.400 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.05300 REMARK 200 FOR THE DATA SET : 27.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.85 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.92 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.9 REMARK 200 DATA REDUNDANCY IN SHELL : 5.30 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.43300 REMARK 200 FOR SHELL : 3.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SOLVE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 57.71 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.91 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 2M AMMONIUM SULFATE, 2% PEG 400, 100 REMARK 280 MM HEPES PH 7.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 294K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 63 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/2 REMARK 290 6555 X-Y,X,Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 27.73050 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 27.73050 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 27.73050 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, B, A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLN A 2 CG CD OE1 NE2 REMARK 470 GLU A 73 CG CD OE1 OE2 REMARK 470 GLU A 74 CG CD OE1 OE2 REMARK 470 ASN A 108 CG OD1 ND2 REMARK 470 ASP A 121 CG OD1 OD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 DC C 2 O3' DC C 2 C3' -0.061 REMARK 500 DT B 6 N1 DT B 6 C2 0.135 REMARK 500 DT B 6 N1 DT B 6 C2 0.060 REMARK 500 DT B 6 N3 DT B 6 C4 0.093 REMARK 500 DT B 6 C4 DT B 6 C5 0.120 REMARK 500 DT B 6 C6 DT B 6 N1 0.095 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 DC C 1 O4' - C1' - N1 ANGL. DEV. = 2.7 DEGREES REMARK 500 DC C 2 O4' - C1' - N1 ANGL. DEV. = 2.8 DEGREES REMARK 500 DT C 4 O4' - C4' - C3' ANGL. DEV. = -3.5 DEGREES REMARK 500 DT C 5 OP1 - P - OP2 ANGL. DEV. = 9.8 DEGREES REMARK 500 DT C 5 C2 - N3 - C4 ANGL. DEV. = -3.8 DEGREES REMARK 500 DA C 6 O5' - P - OP2 ANGL. DEV. = -5.5 DEGREES REMARK 500 DA C 6 O4' - C1' - N9 ANGL. DEV. = -4.3 DEGREES REMARK 500 DC C 9 O4' - C1' - N1 ANGL. DEV. = 3.8 DEGREES REMARK 500 DC C 10 O4' - C1' - N1 ANGL. DEV. = 2.0 DEGREES REMARK 500 DG B 2 O4' - C1' - N9 ANGL. DEV. = 3.3 DEGREES REMARK 500 DC B 5 C3' - O3' - P ANGL. DEV. = 8.5 DEGREES REMARK 500 DT B 6 O4' - C4' - C3' ANGL. DEV. = -2.6 DEGREES REMARK 500 DT B 6 O4' - C1' - N1 ANGL. DEV. = 4.1 DEGREES REMARK 500 DT B 6 C6 - N1 - C2 ANGL. DEV. = 3.2 DEGREES REMARK 500 DT B 6 N3 - C4 - C5 ANGL. DEV. = 4.5 DEGREES REMARK 500 DT B 6 C4 - C5 - C7 ANGL. DEV. = -4.0 DEGREES REMARK 500 3DR B 7 C3' - O3' - P ANGL. DEV. = 8.7 DEGREES REMARK 500 DA B 8 O4' - C1' - N9 ANGL. DEV. = 2.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ILE A 85 -168.31 -120.53 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 302 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 4 SG REMARK 620 2 HIS A 17 NE2 116.0 REMARK 620 3 HIS A 175 ND1 107.8 102.5 REMARK 620 4 CYS A 179 SG 118.9 98.5 111.8 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 206 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 TRP A 117 O REMARK 620 2 VAL A 120 O 91.7 REMARK 620 3 HOH A 417 O 87.9 171.4 REMARK 620 4 HOH A 418 O 112.9 100.2 87.8 REMARK 620 5 HOH A 419 O 164.3 81.0 97.3 82.2 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 206 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ADK A 301 DBREF 2OFI A 1 184 UNP Q8Z2A5 Q8Z2A5_SALTI 1 184 DBREF 2OFI C 1 12 PDB 2OFI 2OFI 1 12 DBREF 2OFI B 1 12 PDB 2OFI 2OFI 1 12 SEQADV 2OFI MSE A 1 UNP Q8Z2A5 MET 1 MODIFIED RESIDUE SEQADV 2OFI MSE A 34 UNP Q8Z2A5 MET 34 MODIFIED RESIDUE SEQADV 2OFI MSE A 71 UNP Q8Z2A5 MET 71 MODIFIED RESIDUE SEQADV 2OFI MSE A 105 UNP Q8Z2A5 MET 105 MODIFIED RESIDUE SEQADV 2OFI MSE A 166 UNP Q8Z2A5 MET 166 MODIFIED RESIDUE SEQRES 1 C 12 DC DC DG DT DT DA DG DT DC DC DG DC SEQRES 1 B 12 DC DG DG DA DC DT 3DR DA DC DG DG DG SEQRES 1 A 184 MSE GLN ARG CYS ASP TRP VAL SER GLN ASP PRO LEU TYR SEQRES 2 A 184 ILE ALA TYR HIS ASP ASN GLU TRP GLY VAL PRO GLU THR SEQRES 3 A 184 ASP SER ARG LYS LEU PHE GLU MSE ILE CYS LEU GLU GLY SEQRES 4 A 184 GLN GLN ALA GLY LEU SER TRP ILE THR VAL LEU LYS LYS SEQRES 5 A 184 ARG GLU ASN TYR ARG ALA CYS PHE HIS GLN PHE ASP PRO SEQRES 6 A 184 ILE ARG ILE ALA ALA MSE GLN GLU GLU ASP VAL GLU ARG SEQRES 7 A 184 LEU LEU GLN ASN THR GLY ILE ILE ARG HIS ARG GLY LYS SEQRES 8 A 184 ILE GLN ALA ILE ILE SER ASN ALA ARG ALA TRP LEU ALA SEQRES 9 A 184 MSE GLU GLN ASN GLY GLU SER PHE ALA ASP PHE VAL TRP SEQRES 10 A 184 SER PHE VAL ASP GLY GLN PRO GLN ILE THR GLN ALA ALA SEQRES 11 A 184 SER LEU ASP LYS ILE PRO THR SER THR PRO ALA SER ASP SEQRES 12 A 184 ALA LEU ALA LYS ALA LEU LYS LYS ARG GLY PHE LYS PHE SEQRES 13 A 184 VAL GLY THR THR ILE CYS TYR SER PHE MSE GLN ALA CYS SEQRES 14 A 184 GLY LEU VAL ASN ASP HIS ILE THR GLY CYS PHE CYS HIS SEQRES 15 A 184 PRO GLY MODRES 2OFI MSE A 1 MET SELENOMETHIONINE MODRES 2OFI MSE A 34 MET SELENOMETHIONINE MODRES 2OFI MSE A 71 MET SELENOMETHIONINE MODRES 2OFI MSE A 105 MET SELENOMETHIONINE MODRES 2OFI MSE A 166 MET SELENOMETHIONINE HET 3DR B 7 22 HET MSE A 1 8 HET MSE A 34 8 HET MSE A 71 8 HET MSE A 105 8 HET MSE A 166 8 HET ZN A 302 1 HET NA A 206 1 HET ADK A 301 11 HETNAM 3DR 1',2'-DIDEOXYRIBOFURANOSE-5'-PHOSPHATE HETNAM MSE SELENOMETHIONINE HETNAM ZN ZINC ION HETNAM NA SODIUM ION HETNAM ADK 3-METHYL-3H-PURIN-6-YLAMINE HETSYN 3DR ABASIC DIDEOXYRIBOSE HETSYN ADK 3-METHYLADENINE FORMUL 2 3DR C5 H11 O6 P FORMUL 3 MSE 5(C5 H11 N O2 SE) FORMUL 4 ZN ZN 2+ FORMUL 5 NA NA 1+ FORMUL 6 ADK C6 H7 N5 FORMUL 7 HOH *159(H2 O) HELIX 1 1 ASP A 10 GLU A 20 1 11 HELIX 2 2 ASP A 27 GLN A 41 1 15 HELIX 3 3 SER A 45 LYS A 52 1 8 HELIX 4 4 LYS A 52 PHE A 60 1 9 HELIX 5 5 HIS A 61 PHE A 63 5 3 HELIX 6 6 ASP A 64 ALA A 70 1 7 HELIX 7 7 GLN A 72 LEU A 80 1 9 HELIX 8 8 HIS A 88 GLN A 107 1 20 HELIX 9 9 SER A 111 SER A 118 1 8 HELIX 10 10 SER A 131 ILE A 135 5 5 HELIX 11 11 THR A 139 ARG A 152 1 14 HELIX 12 12 GLY A 158 CYS A 169 1 12 SHEET 1 A 2 GLN A 125 ILE A 126 0 SHEET 2 A 2 VAL A 172 ASN A 173 1 O ASN A 173 N GLN A 125 LINK O3'B DT B 6 P B3DR B 7 1555 1555 1.61 LINK O3'A DT B 6 P A3DR B 7 1555 1555 1.60 LINK O3'B3DR B 7 P DA B 8 1555 1555 1.59 LINK O3'A3DR B 7 P DA B 8 1555 1555 1.60 LINK C MSE A 1 N GLN A 2 1555 1555 1.34 LINK C GLU A 33 N MSE A 34 1555 1555 1.35 LINK C MSE A 34 N ILE A 35 1555 1555 1.34 LINK C ALA A 70 N MSE A 71 1555 1555 1.33 LINK C MSE A 71 N GLN A 72 1555 1555 1.34 LINK C ALA A 104 N MSE A 105 1555 1555 1.34 LINK C MSE A 105 N GLU A 106 1555 1555 1.33 LINK C PHE A 165 N MSE A 166 1555 1555 1.33 LINK C MSE A 166 N GLN A 167 1555 1555 1.34 LINK SG CYS A 4 ZN ZN A 302 1555 1555 2.28 LINK NE2 HIS A 17 ZN ZN A 302 1555 1555 2.09 LINK O TRP A 117 NA NA A 206 1555 1555 2.26 LINK O VAL A 120 NA NA A 206 1555 1555 2.25 LINK ND1 HIS A 175 ZN ZN A 302 1555 1555 2.08 LINK SG CYS A 179 ZN ZN A 302 1555 1555 2.28 LINK NA NA A 206 O HOH A 417 1555 1555 2.83 LINK NA NA A 206 O HOH A 418 1555 1555 2.14 LINK NA NA A 206 O HOH A 419 1555 1555 2.57 SITE 1 AC1 4 CYS A 4 HIS A 17 HIS A 175 CYS A 179 SITE 1 AC2 5 TRP A 117 VAL A 120 HOH A 417 HOH A 418 SITE 2 AC2 5 HOH A 419 SITE 1 AC3 7 TYR A 13 TYR A 16 TRP A 21 GLU A 38 SITE 2 AC3 7 TRP A 46 ALA A 168 HOH A 309 CRYST1 101.963 101.963 55.461 90.00 90.00 120.00 P 63 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009807 0.005662 0.000000 0.00000 SCALE2 0.000000 0.011325 0.000000 0.00000 SCALE3 0.000000 0.000000 0.018031 0.00000