HEADER OXIDOREDUCTASE 04-JAN-07 2OFP TITLE CRYSTAL STRUCTURE OF ESCHERICHIA COLI KETOPANTOATE REDUCTASE IN A TITLE 2 TERNARY COMPLEX WITH NADP+ AND PANTOATE COMPND MOL_ID: 1; COMPND 2 MOLECULE: KETOPANTOATE REDUCTASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: 2-DEHYDROPANTOATE 2-REDUCTASE, KPA REDUCTASE, KPR; COMPND 5 EC: 1.1.1.169; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI K12; SOURCE 3 ORGANISM_TAXID: 83333; SOURCE 4 STRAIN: K-12; SOURCE 5 GENE: PANE, APBA; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: C41(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: MINI-PRSETA KEYWDS PANE, APBA, KETOPANTOATE REDUCTASE, TERNARY COMPLEX, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR A.CIULLI,D.Y.CHIRGADZE,A.G.SMITH,T.L.BLUNDELL,C.ABELL REVDAT 4 30-AUG-23 2OFP 1 REMARK SEQADV REVDAT 3 24-FEB-09 2OFP 1 VERSN REVDAT 2 03-APR-07 2OFP 1 JRNL REVDAT 1 16-JAN-07 2OFP 0 JRNL AUTH A.CIULLI,D.Y.CHIRGADZE,A.G.SMITH,T.L.BLUNDELL,C.ABELL JRNL TITL CRYSTAL STRUCTURE OF ESCHERICHIA COLI KETOPANTOATE REDUCTASE JRNL TITL 2 IN A TERNARY COMPLEX WITH NADP+ AND PANTOATE BOUND: JRNL TITL 3 SUBSTRATE RECOGNITION, CONFORMATIONAL CHANGE, AND JRNL TITL 4 COOPERATIVITY. JRNL REF J.BIOL.CHEM. V. 282 8487 2007 JRNL REFN ISSN 0021-9258 JRNL PMID 17229734 JRNL DOI 10.1074/JBC.M611171200 REMARK 2 REMARK 2 RESOLUTION. 2.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 43.94 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 38533 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.159 REMARK 3 R VALUE (WORKING SET) : 0.156 REMARK 3 FREE R VALUE : 0.215 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2032 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.30 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.36 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2791 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.1820 REMARK 3 BIN FREE R VALUE SET COUNT : 143 REMARK 3 BIN FREE R VALUE : 0.2670 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4598 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 144 REMARK 3 SOLVENT ATOMS : 508 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 38.80 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 36.30 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.00000 REMARK 3 B22 (A**2) : 0.00000 REMARK 3 B33 (A**2) : 0.01000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.205 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.188 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.120 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.821 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.965 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.934 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4955 ; 0.014 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6776 ; 1.448 ; 1.979 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 606 ; 5.975 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 229 ;37.219 ;24.454 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 816 ;16.253 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 35 ;18.431 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 778 ; 0.095 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3731 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 2412 ; 0.202 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 3384 ; 0.301 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 479 ; 0.173 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 49 ; 0.194 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 19 ; 0.241 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3087 ; 3.040 ; 5.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4861 ; 4.149 ; 6.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2125 ; 3.972 ; 5.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1915 ; 5.385 ; 7.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. REFMAC 5.2.0019 AND CNS V1.1 WERE USED FOR REFINEMENT. REMARK 4 REMARK 4 2OFP COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 05-JAN-07. REMARK 100 THE DEPOSITION ID IS D_1000041077. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 19-MAY-06 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID14-4 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.977 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 40629 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.300 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 9.300 REMARK 200 R MERGE (I) : 0.07300 REMARK 200 R SYM (I) : 0.07300 REMARK 200 FOR THE DATA SET : 12.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.35 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 9.30 REMARK 200 R MERGE FOR SHELL (I) : 0.42500 REMARK 200 R SYM FOR SHELL (I) : 0.42500 REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: PDB ENTRIES 1KS9 AND 1YJQ REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 60.14 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.09 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 50MM HEPES-HCL, 35% V/V DIOXANE, 2 MM REMARK 280 NADP+, 10 MM PANTOATE, PH 7.6, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 85.58400 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 50.84600 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 50.84600 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 42.79200 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 50.84600 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 50.84600 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 128.37600 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 50.84600 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 50.84600 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 42.79200 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 50.84600 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 50.84600 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 128.37600 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 85.58400 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE BIOLOGICAL ASSEMBLY IS A MONOMER. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -16 REMARK 465 ARG A -15 REMARK 465 GLY A -14 REMARK 465 SER A -13 REMARK 465 HIS A -12 REMARK 465 HIS A -11 REMARK 465 HIS A -10 REMARK 465 HIS A -9 REMARK 465 HIS A -8 REMARK 465 HIS A -7 REMARK 465 GLY A -6 REMARK 465 LEU A -5 REMARK 465 VAL A -4 REMARK 465 PRO A -3 REMARK 465 ARG A -2 REMARK 465 GLY A -1 REMARK 465 GLU A 293 REMARK 465 ARG A 294 REMARK 465 ILE A 295 REMARK 465 GLY A 296 REMARK 465 THR A 297 REMARK 465 GLY A 298 REMARK 465 LEU A 299 REMARK 465 PRO A 300 REMARK 465 ARG A 301 REMARK 465 PRO A 302 REMARK 465 TRP A 303 REMARK 465 MET B -16 REMARK 465 ARG B -15 REMARK 465 GLY B -14 REMARK 465 SER B -13 REMARK 465 HIS B -12 REMARK 465 HIS B -11 REMARK 465 HIS B -10 REMARK 465 HIS B -9 REMARK 465 HIS B -8 REMARK 465 HIS B -7 REMARK 465 GLY B -6 REMARK 465 LEU B -5 REMARK 465 VAL B -4 REMARK 465 PRO B -3 REMARK 465 ARG B -2 REMARK 465 GLY B -1 REMARK 465 ARG B 294 REMARK 465 ILE B 295 REMARK 465 GLY B 296 REMARK 465 THR B 297 REMARK 465 GLY B 298 REMARK 465 LEU B 299 REMARK 465 PRO B 300 REMARK 465 ARG B 301 REMARK 465 PRO B 302 REMARK 465 TRP B 303 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 SER A 0 OG REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NE2 GLN A 27 O HOH A 885 1.73 REMARK 500 O GLY A 126 O HOH A 924 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 760 O HOH A 884 3555 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 MET A 115 CG - SD - CE ANGL. DEV. = 10.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 CYS A 8 47.10 -90.95 REMARK 500 VAL A 159 -60.76 -100.57 REMARK 500 ILE A 260 -94.06 -112.56 REMARK 500 CYS B 8 52.13 -98.65 REMARK 500 ILE B 260 -99.93 -115.22 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT B 801 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NAP A 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NAP B 802 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PAF B 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PAF A 602 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE DIO A 701 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE DIO A 702 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE DIO B 703 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE DIO B 704 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1KS9 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF ESCHERICHIA COLI KETOPANTOATE REDUCTASE REMARK 900 RELATED ID: 1YJQ RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF KETOPANTOATE REDUCTASE IN COMPLEX WITH NADP+ REMARK 900 RELATED ID: 1YON RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF KETOPANTOATE REDUCTASE IN COMPLEX WITH 2- REMARK 900 MONOPHOSPHOADENOSINE-5'-DIPHOSPHATE DBREF 2OFP A 1 303 UNP P0A9J4 PANE_ECOLI 1 303 DBREF 2OFP B 1 303 UNP P0A9J4 PANE_ECOLI 1 303 SEQADV 2OFP MET A -16 UNP P0A9J4 EXPRESSION TAG SEQADV 2OFP ARG A -15 UNP P0A9J4 EXPRESSION TAG SEQADV 2OFP GLY A -14 UNP P0A9J4 EXPRESSION TAG SEQADV 2OFP SER A -13 UNP P0A9J4 EXPRESSION TAG SEQADV 2OFP HIS A -12 UNP P0A9J4 EXPRESSION TAG SEQADV 2OFP HIS A -11 UNP P0A9J4 EXPRESSION TAG SEQADV 2OFP HIS A -10 UNP P0A9J4 EXPRESSION TAG SEQADV 2OFP HIS A -9 UNP P0A9J4 EXPRESSION TAG SEQADV 2OFP HIS A -8 UNP P0A9J4 EXPRESSION TAG SEQADV 2OFP HIS A -7 UNP P0A9J4 EXPRESSION TAG SEQADV 2OFP GLY A -6 UNP P0A9J4 EXPRESSION TAG SEQADV 2OFP LEU A -5 UNP P0A9J4 EXPRESSION TAG SEQADV 2OFP VAL A -4 UNP P0A9J4 EXPRESSION TAG SEQADV 2OFP PRO A -3 UNP P0A9J4 EXPRESSION TAG SEQADV 2OFP ARG A -2 UNP P0A9J4 EXPRESSION TAG SEQADV 2OFP GLY A -1 UNP P0A9J4 EXPRESSION TAG SEQADV 2OFP SER A 0 UNP P0A9J4 EXPRESSION TAG SEQADV 2OFP MET B -16 UNP P0A9J4 EXPRESSION TAG SEQADV 2OFP ARG B -15 UNP P0A9J4 EXPRESSION TAG SEQADV 2OFP GLY B -14 UNP P0A9J4 EXPRESSION TAG SEQADV 2OFP SER B -13 UNP P0A9J4 EXPRESSION TAG SEQADV 2OFP HIS B -12 UNP P0A9J4 EXPRESSION TAG SEQADV 2OFP HIS B -11 UNP P0A9J4 EXPRESSION TAG SEQADV 2OFP HIS B -10 UNP P0A9J4 EXPRESSION TAG SEQADV 2OFP HIS B -9 UNP P0A9J4 EXPRESSION TAG SEQADV 2OFP HIS B -8 UNP P0A9J4 EXPRESSION TAG SEQADV 2OFP HIS B -7 UNP P0A9J4 EXPRESSION TAG SEQADV 2OFP GLY B -6 UNP P0A9J4 EXPRESSION TAG SEQADV 2OFP LEU B -5 UNP P0A9J4 EXPRESSION TAG SEQADV 2OFP VAL B -4 UNP P0A9J4 EXPRESSION TAG SEQADV 2OFP PRO B -3 UNP P0A9J4 EXPRESSION TAG SEQADV 2OFP ARG B -2 UNP P0A9J4 EXPRESSION TAG SEQADV 2OFP GLY B -1 UNP P0A9J4 EXPRESSION TAG SEQADV 2OFP SER B 0 UNP P0A9J4 EXPRESSION TAG SEQRES 1 A 320 MET ARG GLY SER HIS HIS HIS HIS HIS HIS GLY LEU VAL SEQRES 2 A 320 PRO ARG GLY SER MET LYS ILE THR VAL LEU GLY CYS GLY SEQRES 3 A 320 ALA LEU GLY GLN LEU TRP LEU THR ALA LEU CYS LYS GLN SEQRES 4 A 320 GLY HIS GLU VAL GLN GLY TRP LEU ARG VAL PRO GLN PRO SEQRES 5 A 320 TYR CYS SER VAL ASN LEU VAL GLU THR ASP GLY SER ILE SEQRES 6 A 320 PHE ASN GLU SER LEU THR ALA ASN ASP PRO ASP PHE LEU SEQRES 7 A 320 ALA THR SER ASP LEU LEU LEU VAL THR LEU LYS ALA TRP SEQRES 8 A 320 GLN VAL SER ASP ALA VAL LYS SER LEU ALA SER THR LEU SEQRES 9 A 320 PRO VAL THR THR PRO ILE LEU LEU ILE HIS ASN GLY MET SEQRES 10 A 320 GLY THR ILE GLU GLU LEU GLN ASN ILE GLN GLN PRO LEU SEQRES 11 A 320 LEU MET GLY THR THR THR HIS ALA ALA ARG ARG ASP GLY SEQRES 12 A 320 ASN VAL ILE ILE HIS VAL ALA ASN GLY ILE THR HIS ILE SEQRES 13 A 320 GLY PRO ALA ARG GLN GLN ASP GLY ASP TYR SER TYR LEU SEQRES 14 A 320 ALA ASP ILE LEU GLN THR VAL LEU PRO ASP VAL ALA TRP SEQRES 15 A 320 HIS ASN ASN ILE ARG ALA GLU LEU TRP ARG LYS LEU ALA SEQRES 16 A 320 VAL ASN CYS VAL ILE ASN PRO LEU THR ALA ILE TRP ASN SEQRES 17 A 320 CYS PRO ASN GLY GLU LEU ARG HIS HIS PRO GLN GLU ILE SEQRES 18 A 320 MET GLN ILE CYS GLU GLU VAL ALA ALA VAL ILE GLU ARG SEQRES 19 A 320 GLU GLY HIS HIS THR SER ALA GLU ASP LEU ARG ASP TYR SEQRES 20 A 320 VAL MET GLN VAL ILE ASP ALA THR ALA GLU ASN ILE SER SEQRES 21 A 320 SER MET LEU GLN ASP ILE ARG ALA LEU ARG HIS THR GLU SEQRES 22 A 320 ILE ASP TYR ILE ASN GLY PHE LEU LEU ARG ARG ALA ARG SEQRES 23 A 320 ALA HIS GLY ILE ALA VAL PRO GLU ASN THR ARG LEU PHE SEQRES 24 A 320 GLU MET VAL LYS ARG LYS GLU SER GLU TYR GLU ARG ILE SEQRES 25 A 320 GLY THR GLY LEU PRO ARG PRO TRP SEQRES 1 B 320 MET ARG GLY SER HIS HIS HIS HIS HIS HIS GLY LEU VAL SEQRES 2 B 320 PRO ARG GLY SER MET LYS ILE THR VAL LEU GLY CYS GLY SEQRES 3 B 320 ALA LEU GLY GLN LEU TRP LEU THR ALA LEU CYS LYS GLN SEQRES 4 B 320 GLY HIS GLU VAL GLN GLY TRP LEU ARG VAL PRO GLN PRO SEQRES 5 B 320 TYR CYS SER VAL ASN LEU VAL GLU THR ASP GLY SER ILE SEQRES 6 B 320 PHE ASN GLU SER LEU THR ALA ASN ASP PRO ASP PHE LEU SEQRES 7 B 320 ALA THR SER ASP LEU LEU LEU VAL THR LEU LYS ALA TRP SEQRES 8 B 320 GLN VAL SER ASP ALA VAL LYS SER LEU ALA SER THR LEU SEQRES 9 B 320 PRO VAL THR THR PRO ILE LEU LEU ILE HIS ASN GLY MET SEQRES 10 B 320 GLY THR ILE GLU GLU LEU GLN ASN ILE GLN GLN PRO LEU SEQRES 11 B 320 LEU MET GLY THR THR THR HIS ALA ALA ARG ARG ASP GLY SEQRES 12 B 320 ASN VAL ILE ILE HIS VAL ALA ASN GLY ILE THR HIS ILE SEQRES 13 B 320 GLY PRO ALA ARG GLN GLN ASP GLY ASP TYR SER TYR LEU SEQRES 14 B 320 ALA ASP ILE LEU GLN THR VAL LEU PRO ASP VAL ALA TRP SEQRES 15 B 320 HIS ASN ASN ILE ARG ALA GLU LEU TRP ARG LYS LEU ALA SEQRES 16 B 320 VAL ASN CYS VAL ILE ASN PRO LEU THR ALA ILE TRP ASN SEQRES 17 B 320 CYS PRO ASN GLY GLU LEU ARG HIS HIS PRO GLN GLU ILE SEQRES 18 B 320 MET GLN ILE CYS GLU GLU VAL ALA ALA VAL ILE GLU ARG SEQRES 19 B 320 GLU GLY HIS HIS THR SER ALA GLU ASP LEU ARG ASP TYR SEQRES 20 B 320 VAL MET GLN VAL ILE ASP ALA THR ALA GLU ASN ILE SER SEQRES 21 B 320 SER MET LEU GLN ASP ILE ARG ALA LEU ARG HIS THR GLU SEQRES 22 B 320 ILE ASP TYR ILE ASN GLY PHE LEU LEU ARG ARG ALA ARG SEQRES 23 B 320 ALA HIS GLY ILE ALA VAL PRO GLU ASN THR ARG LEU PHE SEQRES 24 B 320 GLU MET VAL LYS ARG LYS GLU SER GLU TYR GLU ARG ILE SEQRES 25 B 320 GLY THR GLY LEU PRO ARG PRO TRP HET NAP A 304 48 HET PAF A 602 10 HET DIO A 701 6 HET DIO A 702 6 HET ACT B 801 4 HET NAP B 802 48 HET PAF B 601 10 HET DIO B 703 6 HET DIO B 704 6 HETNAM NAP NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE HETNAM PAF PANTOATE HETNAM DIO 1,4-DIETHYLENE DIOXIDE HETNAM ACT ACETATE ION HETSYN NAP 2'-MONOPHOSPHOADENOSINE 5'-DIPHOSPHORIBOSE HETSYN PAF 2,4-DIHYDROXY-3,3-DIMETHYL-BUTYRATE FORMUL 3 NAP 2(C21 H28 N7 O17 P3) FORMUL 4 PAF 2(C6 H11 O4 1-) FORMUL 5 DIO 4(C4 H8 O2) FORMUL 7 ACT C2 H3 O2 1- FORMUL 12 HOH *508(H2 O) HELIX 1 1 GLY A 9 GLN A 22 1 14 HELIX 2 2 ASP A 57 THR A 63 1 7 HELIX 3 3 GLN A 75 ALA A 84 1 10 HELIX 4 4 THR A 102 LEU A 106 5 5 HELIX 5 5 TYR A 149 THR A 158 1 10 HELIX 6 6 ILE A 169 ASN A 191 1 23 HELIX 7 7 PRO A 193 HIS A 199 5 7 HELIX 8 8 HIS A 200 GLU A 218 1 19 HELIX 9 9 SER A 223 THR A 238 1 16 HELIX 10 10 SER A 243 ALA A 251 1 9 HELIX 11 11 GLU A 256 TYR A 259 5 4 HELIX 12 12 ILE A 260 HIS A 271 1 12 HELIX 13 13 VAL A 275 GLU A 291 1 17 HELIX 14 14 GLY B 9 GLN B 22 1 14 HELIX 15 15 ASP B 57 THR B 63 1 7 HELIX 16 16 LYS B 72 ALA B 84 1 13 HELIX 17 17 GLY B 101 LEU B 106 1 6 HELIX 18 18 TYR B 149 THR B 158 1 10 HELIX 19 19 ILE B 169 ASN B 191 1 23 HELIX 20 20 PRO B 193 HIS B 199 5 7 HELIX 21 21 HIS B 200 ARG B 217 1 18 HELIX 22 22 SER B 223 THR B 238 1 16 HELIX 23 23 SER B 243 ALA B 251 1 9 HELIX 24 24 GLU B 256 TYR B 259 5 4 HELIX 25 25 ILE B 260 HIS B 271 1 12 HELIX 26 26 VAL B 275 GLU B 291 1 17 SHEET 1 A 7 GLU A 25 TRP A 29 0 SHEET 2 A 7 LYS A 2 LEU A 6 1 N VAL A 5 O GLN A 27 SHEET 3 A 7 LEU A 66 VAL A 69 1 O LEU A 68 N LEU A 6 SHEET 4 A 7 ILE A 93 ILE A 96 1 O LEU A 94 N LEU A 67 SHEET 5 A 7 LEU A 113 THR A 118 1 O LEU A 114 N LEU A 95 SHEET 6 A 7 THR A 137 PRO A 141 -1 O GLY A 140 N MET A 115 SHEET 7 A 7 VAL A 163 TRP A 165 1 O ALA A 164 N ILE A 139 SHEET 1 B 4 ILE A 48 LEU A 53 0 SHEET 2 B 4 CYS A 37 VAL A 42 -1 N CYS A 37 O LEU A 53 SHEET 3 B 4 VAL A 128 ALA A 133 1 O ILE A 129 N VAL A 42 SHEET 4 B 4 ALA A 121 ASP A 125 -1 N ARG A 123 O ILE A 130 SHEET 1 C 7 GLU B 25 TRP B 29 0 SHEET 2 C 7 LYS B 2 LEU B 6 1 N ILE B 3 O GLU B 25 SHEET 3 C 7 LEU B 66 VAL B 69 1 O LEU B 68 N THR B 4 SHEET 4 C 7 ILE B 93 ILE B 96 1 O LEU B 94 N VAL B 69 SHEET 5 C 7 LEU B 113 THR B 118 1 O LEU B 114 N ILE B 93 SHEET 6 C 7 THR B 137 PRO B 141 -1 O GLY B 140 N MET B 115 SHEET 7 C 7 VAL B 163 TRP B 165 1 O ALA B 164 N ILE B 139 SHEET 1 D 4 ILE B 48 LEU B 53 0 SHEET 2 D 4 CYS B 37 VAL B 42 -1 N VAL B 39 O GLU B 51 SHEET 3 D 4 VAL B 128 ALA B 133 1 O ILE B 129 N ASN B 40 SHEET 4 D 4 ALA B 121 ASP B 125 -1 N ARG B 123 O ILE B 130 CISPEP 1 PRO A 161 ASP A 162 0 -5.89 CISPEP 2 PRO B 161 ASP B 162 0 -6.54 SITE 1 AC1 3 ALA B 171 LEU B 227 HOH B 946 SITE 1 AC2 31 LEU A 6 GLY A 7 GLY A 9 ALA A 10 SITE 2 AC2 31 LEU A 11 TRP A 29 LEU A 30 ARG A 31 SITE 3 AC2 31 THR A 70 LEU A 71 LYS A 72 GLN A 75 SITE 4 AC2 31 ALA A 79 HIS A 97 ASN A 98 THR A 118 SITE 5 AC2 31 HIS A 120 ALA A 121 ALA A 122 GLU A 256 SITE 6 AC2 31 HOH A 712 HOH A 713 HOH A 768 HOH A 769 SITE 7 AC2 31 HOH A 785 HOH A 791 HOH A 796 HOH A 802 SITE 8 AC2 31 HOH A 846 HOH A 868 HOH A 876 SITE 1 AC3 37 LEU B 6 GLY B 7 CYS B 8 GLY B 9 SITE 2 AC3 37 ALA B 10 LEU B 11 TRP B 29 LEU B 30 SITE 3 AC3 37 ARG B 31 THR B 70 LEU B 71 LYS B 72 SITE 4 AC3 37 GLN B 75 HIS B 97 ASN B 98 THR B 118 SITE 5 AC3 37 HIS B 120 ALA B 121 ALA B 122 ASN B 241 SITE 6 AC3 37 SER B 244 ARG B 253 GLU B 256 PAF B 601 SITE 7 AC3 37 HOH B 812 HOH B 834 HOH B 839 HOH B 879 SITE 8 AC3 37 HOH B 885 HOH B 886 HOH B 893 HOH B 913 SITE 9 AC3 37 HOH B 914 HOH B 919 HOH B 941 HOH B 988 SITE 10 AC3 37 HOH B 999 SITE 1 AC4 10 ASN B 98 LYS B 176 ASN B 180 ILE B 183 SITE 2 AC4 10 ASN B 184 ASN B 194 ASN B 241 SER B 243 SITE 3 AC4 10 SER B 244 NAP B 802 SITE 1 AC5 10 ASN A 98 ASN A 180 ASN A 184 ASN A 194 SITE 2 AC5 10 VAL A 234 SER A 243 SER A 244 HOH A 838 SITE 3 AC5 10 HOH A 849 HOH A 853 SITE 1 AC6 4 ASP A 258 TYR A 259 ARG A 266 ASN B 127 SITE 1 AC7 5 GLY A 262 ARG A 266 ARG A 269 HOH A 731 SITE 2 AC7 5 ASN B 127 SITE 1 AC8 7 ASP A 229 GLN A 233 LYS B 21 GLU B 43 SITE 2 AC8 7 ASP B 45 SER B 47 HOH B 869 SITE 1 AC9 5 ALA B 55 ASP B 57 TRP B 190 GLU B 203 SITE 2 AC9 5 ARG B 280 CRYST1 101.692 101.692 171.168 90.00 90.00 90.00 P 41 21 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009834 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009834 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005842 0.00000