HEADER PROTEIN TRANSPORT/PROTEIN TRANSPORT 04-JAN-07 2OFQ TITLE NMR SOLUTION STRUCTURE OF A COMPLEX BETWEEN THE VIRB9/VIRB7 TITLE 2 INTERACTION DOMAINS OF THE PKM101 TYPE IV SECRETION SYSTEM COMPND MOL_ID: 1; COMPND 2 MOLECULE: TRAO; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: RESIDUES 177-271; COMPND 5 SYNONYM: HYPOTHETICAL PROTEIN; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: TRAN; COMPND 9 CHAIN: B; COMPND 10 FRAGMENT: RESIDUES 21-42; COMPND 11 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: INCN PLASMID R46; SOURCE 3 ORGANISM_TAXID: 179945; SOURCE 4 GENE: TRAO; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: INCN PLASMID R46; SOURCE 10 ORGANISM_TAXID: 179945; SOURCE 11 GENE: TRAN; SOURCE 12 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 13 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 14 EXPRESSION_SYSTEM_STRAIN: BL21(DE3) KEYWDS TRAO, TRAN, PKM101, PROTEIN TRANSPORT-PROTEIN TRANSPORT COMPLEX EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR R.HARRIS,R.BAYLISS,P.C.DRISCOLL,G.WAKSMAN REVDAT 5 27-DEC-23 2OFQ 1 REMARK REVDAT 4 16-MAR-22 2OFQ 1 REMARK REVDAT 3 24-FEB-09 2OFQ 1 VERSN REVDAT 2 10-APR-07 2OFQ 1 JRNL REVDAT 1 23-JAN-07 2OFQ 0 JRNL AUTH R.BAYLISS,R.HARRIS,L.COUTTE,A.MONIER,R.FRONZES,P.J.CHRISTIE, JRNL AUTH 2 P.C.DRISCOLL,G.WAKSMAN JRNL TITL NMR STRUCTURE OF A COMPLEX BETWEEN THE VIRB9/VIRB7 JRNL TITL 2 INTERACTION DOMAINS OF THE PKM101 TYPE IV SECRETION SYSTEM JRNL REF PROC.NATL.ACAD.SCI.USA V. 104 1673 2007 JRNL REFN ISSN 0027-8424 JRNL PMID 17244707 JRNL DOI 10.1073/PNAS.0609535104 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1 REMARK 3 AUTHORS : BRUNGER A. T. ETALL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2OFQ COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 12-JAN-07. REMARK 100 THE DEPOSITION ID IS D_1000041078. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 6.7 REMARK 210 IONIC STRENGTH : 100MM NACL REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 15N VIRB7, UNLABELLED VIRB9, REMARK 210 20MM SODIUM PHOSPHATE BUFFER, REMARK 210 0.1MM EDTA, 90% H2O, 10% D2O; REMARK 210 15N,13C VIRB7, UNLABELLED VIRB9, REMARK 210 20MM SODIUM PHOSPHATE BUFFER, REMARK 210 0.1MM EDTA, 100% D2O; 15N VIRB9, REMARK 210 UNLABELLED VIRB7, 20MM SODIUM REMARK 210 PHOSPHATE BUFFER, 0.1MM EDTA, 90% REMARK 210 H2O, 10% D2O; 15N,13C VIRB9, REMARK 210 UNLABELLED VIRB7, 20MM SODIUM REMARK 210 PHOSPHATE BUFFER, 0.1MM EDTA, REMARK 210 100% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_15N-SEPARATED_NOESY; 3D_13C REMARK 210 -SEPARATED_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 500 MHZ; 800 MHZ; 600 MHZ REMARK 210 SPECTROMETER MODEL : UNITYPLUS; INOVA REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NULL REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HD21 ASN A 203 H ARG A 205 1.32 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ARG A 205 -69.31 -99.05 REMARK 500 1 THR A 248 154.31 173.36 REMARK 500 1 ASN A 268 -63.34 175.74 REMARK 500 1 PHE A 269 98.04 59.41 REMARK 500 1 PRO B 23 -79.14 -67.55 REMARK 500 1 GLU B 24 124.22 61.98 REMARK 500 1 THR B 30 89.14 40.61 REMARK 500 1 ILE B 37 109.77 62.22 REMARK 500 1 ASP B 40 101.44 61.17 REMARK 500 2 ARG A 205 -69.08 -97.76 REMARK 500 2 LEU A 217 102.79 62.21 REMARK 500 2 ALA A 225 -82.34 57.88 REMARK 500 2 ASN A 233 102.44 -59.51 REMARK 500 2 GLU A 247 39.63 -80.95 REMARK 500 2 LEU A 257 118.28 -165.62 REMARK 500 2 ASN A 268 -69.00 178.43 REMARK 500 2 PHE A 269 97.22 57.91 REMARK 500 2 PRO B 23 -78.99 -69.40 REMARK 500 2 GLU B 24 122.84 61.76 REMARK 500 2 THR B 30 88.61 43.68 REMARK 500 2 PRO B 32 170.00 -49.95 REMARK 500 2 ASP B 40 83.35 60.94 REMARK 500 3 ARG A 205 -69.09 -97.36 REMARK 500 3 LEU A 217 111.01 64.45 REMARK 500 3 ASN A 233 108.64 -53.20 REMARK 500 3 ARG A 241 77.39 53.33 REMARK 500 3 GLU A 247 40.00 -80.76 REMARK 500 3 ASN A 268 -40.86 173.80 REMARK 500 3 PHE A 269 95.46 56.88 REMARK 500 3 GLU B 24 112.55 60.56 REMARK 500 3 ASP B 26 88.71 -59.60 REMARK 500 3 PRO B 32 167.09 -48.51 REMARK 500 3 ASP B 40 98.60 60.36 REMARK 500 3 THR B 41 -64.51 -105.43 REMARK 500 4 ARG A 205 -68.13 -90.75 REMARK 500 4 ARG A 241 77.38 54.79 REMARK 500 4 ASN A 242 13.67 -143.49 REMARK 500 4 GLU A 247 48.97 -81.54 REMARK 500 4 ASN A 268 -36.58 75.92 REMARK 500 4 PHE A 269 96.03 52.73 REMARK 500 4 ALA A 270 78.12 -118.21 REMARK 500 4 PRO B 23 -78.67 -70.67 REMARK 500 4 GLU B 24 124.80 61.97 REMARK 500 4 THR B 30 89.10 39.89 REMARK 500 4 PRO B 32 170.19 -50.05 REMARK 500 4 ASP B 40 151.78 64.85 REMARK 500 5 SER A 224 -165.88 -110.42 REMARK 500 5 GLU A 247 32.41 -95.67 REMARK 500 5 LEU A 257 119.86 -162.55 REMARK 500 5 ASN A 268 142.68 175.05 REMARK 500 REMARK 500 THIS ENTRY HAS 300 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 6936 RELATED DB: BMRB DBREF 2OFQ A 177 271 UNP Q79SE3 Q79SE3_9ZZZZ 177 271 DBREF 2OFQ B 21 42 UNP Q79SE5 Q79SE5_9ZZZZ 21 42 SEQRES 1 A 95 ALA GLY ALA LYS ASN TYR GLN TYR VAL MET SER GLU GLN SEQRES 2 A 95 PRO GLU MET ARG SER ILE GLN PRO VAL HIS VAL TRP ASP SEQRES 3 A 95 ASN TYR ARG PHE THR ARG PHE GLU PHE PRO ALA ASN ALA SEQRES 4 A 95 GLU LEU PRO GLN VAL TYR MET ILE SER ALA SER GLY LYS SEQRES 5 A 95 GLU THR LEU PRO ASN SER HIS VAL VAL GLY GLU ASN ARG SEQRES 6 A 95 ASN ILE ILE GLU VAL GLU THR VAL ALA LYS GLU TRP ARG SEQRES 7 A 95 ILE ARG LEU GLY ASP LYS VAL VAL GLY VAL ARG ASN ASN SEQRES 8 A 95 ASN PHE ALA PRO SEQRES 1 B 22 PRO PRO PRO GLU PRO ASP TRP SER ASN THR VAL PRO VAL SEQRES 2 B 22 ASN LYS THR ILE PRO VAL ASP THR GLN HELIX 1 1 MET A 192 GLN A 196 5 5 SHEET 1 A 6 GLU A 229 THR A 230 0 SHEET 2 A 6 GLN A 219 ILE A 223 -1 N MET A 222 O THR A 230 SHEET 3 A 6 GLU A 252 LEU A 257 -1 O ARG A 254 N TYR A 221 SHEET 4 A 6 LYS A 260 ASN A 266 -1 O VAL A 264 N TRP A 253 SHEET 5 A 6 TYR A 184 MET A 186 -1 N VAL A 185 O ARG A 265 SHEET 6 A 6 VAL B 31 PRO B 32 -1 O VAL B 31 N MET A 186 SHEET 1 B 4 HIS A 199 ASP A 202 0 SHEET 2 B 4 THR A 207 GLU A 210 -1 O GLU A 210 N HIS A 199 SHEET 3 B 4 ILE A 243 VAL A 246 -1 O ILE A 244 N PHE A 209 SHEET 4 B 4 SER A 234 VAL A 237 -1 N VAL A 237 O ILE A 243 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1