data_2OFS # _entry.id 2OFS # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.350 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 2OFS pdb_00002ofs 10.2210/pdb2ofs/pdb RCSB RCSB041080 ? ? WWPDB D_1000041080 ? ? # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 2OFS _pdbx_database_status.recvd_initial_deposition_date 2007-01-04 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_nmr_data ? # _audit_author.name 'Davies, C.' _audit_author.pdbx_ordinal 1 # _citation.id primary _citation.title ;Crystal structure of CD59: implications for molecular recognition of the complement proteins C8 and C9 in the membrane-attack complex. ; _citation.journal_abbrev 'Acta Crystallogr.,Sect.D' _citation.journal_volume 63 _citation.page_first 714 _citation.page_last 721 _citation.year 2007 _citation.journal_id_ASTM ABCRE6 _citation.country DK _citation.journal_id_ISSN 0907-4449 _citation.journal_id_CSD 0766 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 17505110 _citation.pdbx_database_id_DOI 10.1107/S0907444907015557 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Huang, Y.' 1 ? primary 'Fedarovich, A.' 2 ? primary 'Tomlinson, S.' 3 ? primary 'Davies, C.' 4 ? # _cell.entry_id 2OFS _cell.length_a 56.400 _cell.length_b 56.400 _cell.length_c 39.400 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 120.00 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 2OFS _symmetry.space_group_name_H-M 'P 63' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 173 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'CD59 glycoprotein' 8774.933 1 ? ? ? ? 2 water nat water 18.015 73 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name ;Membrane attack complex inhibition factor, MACIF, MAC-inhibitory protein, MAC-IP, Protectin, MEM43 antigen, Membrane inhibitor of reactive lysis, MIRL, 20 kDa homologous restriction factor, HRF-20, HRF20, 1F5 antigen ; # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code FLQCYNCPNPTADCKTAVQCSSDFDACLITKAGLQVYNKCWKFEHCNFNDVTTRLRENELTYYCCKKDLCNFNEQ _entity_poly.pdbx_seq_one_letter_code_can FLQCYNCPNPTADCKTAVQCSSDFDACLITKAGLQVYNKCWKFEHCNFNDVTTRLRENELTYYCCKKDLCNFNEQ _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 PHE n 1 2 LEU n 1 3 GLN n 1 4 CYS n 1 5 TYR n 1 6 ASN n 1 7 CYS n 1 8 PRO n 1 9 ASN n 1 10 PRO n 1 11 THR n 1 12 ALA n 1 13 ASP n 1 14 CYS n 1 15 LYS n 1 16 THR n 1 17 ALA n 1 18 VAL n 1 19 GLN n 1 20 CYS n 1 21 SER n 1 22 SER n 1 23 ASP n 1 24 PHE n 1 25 ASP n 1 26 ALA n 1 27 CYS n 1 28 LEU n 1 29 ILE n 1 30 THR n 1 31 LYS n 1 32 ALA n 1 33 GLY n 1 34 LEU n 1 35 GLN n 1 36 VAL n 1 37 TYR n 1 38 ASN n 1 39 LYS n 1 40 CYS n 1 41 TRP n 1 42 LYS n 1 43 PHE n 1 44 GLU n 1 45 HIS n 1 46 CYS n 1 47 ASN n 1 48 PHE n 1 49 ASN n 1 50 ASP n 1 51 VAL n 1 52 THR n 1 53 THR n 1 54 ARG n 1 55 LEU n 1 56 ARG n 1 57 GLU n 1 58 ASN n 1 59 GLU n 1 60 LEU n 1 61 THR n 1 62 TYR n 1 63 TYR n 1 64 CYS n 1 65 CYS n 1 66 LYS n 1 67 LYS n 1 68 ASP n 1 69 LEU n 1 70 CYS n 1 71 ASN n 1 72 PHE n 1 73 ASN n 1 74 GLU n 1 75 GLN n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name human _entity_src_gen.gene_src_genus Homo _entity_src_gen.pdbx_gene_src_gene CD59 _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Pichia pastoris' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 4922 _entity_src_gen.host_org_genus Pichia _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain SMD1168H _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pPICZalphaA _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code CD59_HUMAN _struct_ref.pdbx_db_accession P13987 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code LQCYNCPNPTADCKTAVNCSSDFDACLITKAGLQVYNKCWKFEHCNFNDVTTRLRENELTYYCCKKDLCNFNEQ _struct_ref.pdbx_align_begin 26 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 2OFS _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 2 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 75 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession P13987 _struct_ref_seq.db_align_beg 26 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 99 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 74 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 2OFS PHE A 1 ? UNP P13987 ? ? 'cloning artifact' 0 1 1 2OFS GLN A 19 ? UNP P13987 ASN 43 'engineered mutation' 18 2 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 2OFS _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.06 _exptl_crystal.density_percent_sol 40.32 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 294 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 3.5 _exptl_crystal_grow.pdbx_details '0.1 M sodium citrate, 16 % polyethylene glycol 6000, 5% isopropanol, pH 3.5, VAPOR DIFFUSION, HANGING DROP, temperature 294K' _exptl_crystal_grow.pdbx_pH_range . # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'MAR CCD 225 mm' _diffrn_detector.pdbx_collection_date 2005-12-08 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.75 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'APS BEAMLINE 22-ID' _diffrn_source.pdbx_synchrotron_site APS _diffrn_source.pdbx_synchrotron_beamline 22-ID _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 1.75 # _reflns.entry_id 2OFS _reflns.observed_criterion_sigma_F 0.0 _reflns.observed_criterion_sigma_I 0.0 _reflns.d_resolution_high 2.12 _reflns.d_resolution_low 28.2 _reflns.number_all 4118 _reflns.number_obs 4118 _reflns.percent_possible_obs 99.3 _reflns.pdbx_Rmerge_I_obs 0.051 _reflns.pdbx_Rsym_value 0.051 _reflns.pdbx_netI_over_sigmaI 52.9 _reflns.B_iso_Wilson_estimate 28.0 _reflns.pdbx_redundancy 12.2 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 2.12 _reflns_shell.d_res_low 2.20 _reflns_shell.percent_possible_all 93.0 _reflns_shell.Rmerge_I_obs 0.141 _reflns_shell.pdbx_Rsym_value 0.141 _reflns_shell.meanI_over_sigI_obs 12.5 _reflns_shell.pdbx_redundancy 10.9 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all 386 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.entry_id 2OFS _refine.ls_number_reflns_obs 4115 _refine.ls_number_reflns_all 4115 _refine.pdbx_ls_sigma_I 0.0 _refine.pdbx_ls_sigma_F 0.0 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 28.2 _refine.ls_d_res_high 2.12 _refine.ls_percent_reflns_obs 99.28 _refine.ls_R_factor_obs 0.18 _refine.ls_R_factor_all 0.18 _refine.ls_R_factor_R_work 0.177 _refine.ls_R_factor_R_free 0.254 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 4.6 _refine.ls_number_reflns_R_free 189 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.953 _refine.correlation_coeff_Fo_to_Fc_free 0.890 _refine.B_iso_mean 22.672 _refine.aniso_B[1][1] -0.95 _refine.aniso_B[2][2] -0.95 _refine.aniso_B[3][3] 1.43 _refine.aniso_B[1][2] -0.48 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details MASK _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.40 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details ? _refine.pdbx_starting_model 1CDQ _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R 0.287 _refine.pdbx_overall_ESU_R_Free 0.229 _refine.overall_SU_ML 0.143 _refine.overall_SU_B 10.557 _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_TLS_residual_ADP_flag 'LIKELY RESIDUAL' _refine.pdbx_diffrn_id 1 _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 608 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 73 _refine_hist.number_atoms_total 681 _refine_hist.d_res_high 2.12 _refine_hist.d_res_low 28.2 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 0.010 0.022 ? 626 'X-RAY DIFFRACTION' ? r_angle_refined_deg 1.440 1.927 ? 850 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 7.224 5.000 ? 74 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 40.237 25.588 ? 34 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 15.533 15.000 ? 105 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 16.183 15.000 ? 2 'X-RAY DIFFRACTION' ? r_chiral_restr 0.097 0.200 ? 90 'X-RAY DIFFRACTION' ? r_gen_planes_refined 0.004 0.020 ? 481 'X-RAY DIFFRACTION' ? r_nbd_refined 0.217 0.200 ? 256 'X-RAY DIFFRACTION' ? r_nbtor_refined 0.300 0.200 ? 432 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined 0.180 0.200 ? 45 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined 0.184 0.200 ? 36 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined 0.205 0.200 ? 16 'X-RAY DIFFRACTION' ? r_mcbond_it 0.505 1.500 ? 381 'X-RAY DIFFRACTION' ? r_mcangle_it 0.996 2.000 ? 606 'X-RAY DIFFRACTION' ? r_scbond_it 1.694 3.000 ? 275 'X-RAY DIFFRACTION' ? r_scangle_it 2.770 4.500 ? 244 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 2.121 _refine_ls_shell.d_res_low 2.175 _refine_ls_shell.number_reflns_R_work 270 _refine_ls_shell.R_factor_R_work 0.21 _refine_ls_shell.percent_reflns_obs 92.26 _refine_ls_shell.R_factor_R_free 0.403 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 16 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.number_reflns_obs 286 _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 2OFS _struct.title 'Crystal structure of human CD59' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2OFS _struct_keywords.pdbx_keywords 'SIGNALING PROTEIN' _struct_keywords.text 'complement inhibitor, SIGNALING PROTEIN' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? # _struct_biol.id 1 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 LYS A 42 ? CYS A 46 ? LYS A 41 CYS A 45 5 ? 5 HELX_P HELX_P2 2 ASN A 47 ? ARG A 56 ? ASN A 46 ARG A 55 1 ? 10 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role disulf1 disulf ? ? A CYS 4 SG ? ? ? 1_555 A CYS 27 SG ? ? A CYS 3 A CYS 26 1_555 ? ? ? ? ? ? ? 2.036 ? ? disulf2 disulf ? ? A CYS 7 SG ? ? ? 1_555 A CYS 14 SG ? ? A CYS 6 A CYS 13 1_555 ? ? ? ? ? ? ? 2.037 ? ? disulf3 disulf ? ? A CYS 20 SG ? ? ? 1_555 A CYS 40 SG ? ? A CYS 19 A CYS 39 1_555 ? ? ? ? ? ? ? 2.032 ? ? disulf4 disulf ? ? A CYS 46 SG ? ? ? 1_555 A CYS 64 SG ? ? A CYS 45 A CYS 63 1_555 ? ? ? ? ? ? ? 2.030 ? ? disulf5 disulf ? ? A CYS 65 SG ? ? ? 1_555 A CYS 70 SG ? ? A CYS 64 A CYS 69 1_555 ? ? ? ? ? ? ? 2.027 ? ? # _struct_conn_type.id disulf _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 2 ? B ? 3 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel B 1 2 ? anti-parallel B 2 3 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 GLN A 3 ? TYR A 5 ? GLN A 2 TYR A 4 A 2 ALA A 17 ? GLN A 19 ? ALA A 16 GLN A 18 B 1 GLN A 35 ? TRP A 41 ? GLN A 34 TRP A 40 B 2 ALA A 26 ? ALA A 32 ? ALA A 25 ALA A 31 B 3 THR A 61 ? CYS A 65 ? THR A 60 CYS A 64 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N CYS A 4 ? N CYS A 3 O VAL A 18 ? O VAL A 17 B 1 2 O LYS A 39 ? O LYS A 38 N LEU A 28 ? N LEU A 27 B 2 3 N LYS A 31 ? N LYS A 30 O THR A 61 ? O THR A 60 # _database_PDB_matrix.entry_id 2OFS _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 2OFS _atom_sites.fract_transf_matrix[1][1] 0.017730 _atom_sites.fract_transf_matrix[1][2] 0.010237 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.020473 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.025381 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 PHE 1 0 0 PHE PHE A . n A 1 2 LEU 2 1 1 LEU LEU A . n A 1 3 GLN 3 2 2 GLN GLN A . n A 1 4 CYS 4 3 3 CYS CYS A . n A 1 5 TYR 5 4 4 TYR TYR A . n A 1 6 ASN 6 5 5 ASN ASN A . n A 1 7 CYS 7 6 6 CYS CYS A . n A 1 8 PRO 8 7 7 PRO PRO A . n A 1 9 ASN 9 8 8 ASN ASN A . n A 1 10 PRO 10 9 9 PRO PRO A . n A 1 11 THR 11 10 10 THR THR A . n A 1 12 ALA 12 11 11 ALA ALA A . n A 1 13 ASP 13 12 12 ASP ASP A . n A 1 14 CYS 14 13 13 CYS CYS A . n A 1 15 LYS 15 14 14 LYS LYS A . n A 1 16 THR 16 15 15 THR THR A . n A 1 17 ALA 17 16 16 ALA ALA A . n A 1 18 VAL 18 17 17 VAL VAL A . n A 1 19 GLN 19 18 18 GLN GLN A . n A 1 20 CYS 20 19 19 CYS CYS A . n A 1 21 SER 21 20 20 SER SER A . n A 1 22 SER 22 21 21 SER SER A . n A 1 23 ASP 23 22 22 ASP ASP A . n A 1 24 PHE 24 23 23 PHE PHE A . n A 1 25 ASP 25 24 24 ASP ASP A . n A 1 26 ALA 26 25 25 ALA ALA A . n A 1 27 CYS 27 26 26 CYS CYS A . n A 1 28 LEU 28 27 27 LEU LEU A . n A 1 29 ILE 29 28 28 ILE ILE A . n A 1 30 THR 30 29 29 THR THR A . n A 1 31 LYS 31 30 30 LYS LYS A . n A 1 32 ALA 32 31 31 ALA ALA A . n A 1 33 GLY 33 32 32 GLY GLY A . n A 1 34 LEU 34 33 33 LEU LEU A . n A 1 35 GLN 35 34 34 GLN GLN A . n A 1 36 VAL 36 35 35 VAL VAL A . n A 1 37 TYR 37 36 36 TYR TYR A . n A 1 38 ASN 38 37 37 ASN ASN A . n A 1 39 LYS 39 38 38 LYS LYS A . n A 1 40 CYS 40 39 39 CYS CYS A . n A 1 41 TRP 41 40 40 TRP TRP A . n A 1 42 LYS 42 41 41 LYS LYS A . n A 1 43 PHE 43 42 42 PHE PHE A . n A 1 44 GLU 44 43 43 GLU GLU A . n A 1 45 HIS 45 44 44 HIS HIS A . n A 1 46 CYS 46 45 45 CYS CYS A . n A 1 47 ASN 47 46 46 ASN ASN A . n A 1 48 PHE 48 47 47 PHE PHE A . n A 1 49 ASN 49 48 48 ASN ASN A . n A 1 50 ASP 50 49 49 ASP ASP A . n A 1 51 VAL 51 50 50 VAL VAL A . n A 1 52 THR 52 51 51 THR THR A . n A 1 53 THR 53 52 52 THR THR A . n A 1 54 ARG 54 53 53 ARG ARG A . n A 1 55 LEU 55 54 54 LEU LEU A . n A 1 56 ARG 56 55 55 ARG ARG A . n A 1 57 GLU 57 56 56 GLU GLU A . n A 1 58 ASN 58 57 57 ASN ASN A . n A 1 59 GLU 59 58 58 GLU GLU A . n A 1 60 LEU 60 59 59 LEU LEU A . n A 1 61 THR 61 60 60 THR THR A . n A 1 62 TYR 62 61 61 TYR TYR A . n A 1 63 TYR 63 62 62 TYR TYR A . n A 1 64 CYS 64 63 63 CYS CYS A . n A 1 65 CYS 65 64 64 CYS CYS A . n A 1 66 LYS 66 65 65 LYS LYS A . n A 1 67 LYS 67 66 66 LYS LYS A . n A 1 68 ASP 68 67 67 ASP ASP A . n A 1 69 LEU 69 68 68 LEU LEU A . n A 1 70 CYS 70 69 69 CYS CYS A . n A 1 71 ASN 71 70 70 ASN ASN A . n A 1 72 PHE 72 71 71 PHE PHE A . n A 1 73 ASN 73 72 72 ASN ASN A . n A 1 74 GLU 74 73 73 GLU GLU A . n A 1 75 GLN 75 74 74 GLN GLN A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HOH 1 75 1 HOH HOH A . B 2 HOH 2 76 2 HOH HOH A . B 2 HOH 3 77 3 HOH HOH A . B 2 HOH 4 78 4 HOH HOH A . B 2 HOH 5 79 5 HOH HOH A . B 2 HOH 6 80 6 HOH HOH A . B 2 HOH 7 81 7 HOH HOH A . B 2 HOH 8 82 8 HOH HOH A . B 2 HOH 9 83 9 HOH HOH A . B 2 HOH 10 84 11 HOH HOH A . B 2 HOH 11 85 12 HOH HOH A . B 2 HOH 12 86 13 HOH HOH A . B 2 HOH 13 87 14 HOH HOH A . B 2 HOH 14 88 15 HOH HOH A . B 2 HOH 15 89 16 HOH HOH A . B 2 HOH 16 90 17 HOH HOH A . B 2 HOH 17 91 18 HOH HOH A . B 2 HOH 18 92 19 HOH HOH A . B 2 HOH 19 93 20 HOH HOH A . B 2 HOH 20 94 21 HOH HOH A . B 2 HOH 21 95 22 HOH HOH A . B 2 HOH 22 96 23 HOH HOH A . B 2 HOH 23 97 24 HOH HOH A . B 2 HOH 24 98 26 HOH HOH A . B 2 HOH 25 99 27 HOH HOH A . B 2 HOH 26 100 28 HOH HOH A . B 2 HOH 27 101 29 HOH HOH A . B 2 HOH 28 102 30 HOH HOH A . B 2 HOH 29 103 31 HOH HOH A . B 2 HOH 30 104 32 HOH HOH A . B 2 HOH 31 105 33 HOH HOH A . B 2 HOH 32 106 34 HOH HOH A . B 2 HOH 33 107 35 HOH HOH A . B 2 HOH 34 108 37 HOH HOH A . B 2 HOH 35 109 38 HOH HOH A . B 2 HOH 36 110 40 HOH HOH A . B 2 HOH 37 111 41 HOH HOH A . B 2 HOH 38 112 42 HOH HOH A . B 2 HOH 39 113 43 HOH HOH A . B 2 HOH 40 114 44 HOH HOH A . B 2 HOH 41 115 45 HOH HOH A . B 2 HOH 42 116 46 HOH HOH A . B 2 HOH 43 117 48 HOH HOH A . B 2 HOH 44 118 49 HOH HOH A . B 2 HOH 45 119 50 HOH HOH A . B 2 HOH 46 120 51 HOH HOH A . B 2 HOH 47 121 52 HOH HOH A . B 2 HOH 48 122 53 HOH HOH A . B 2 HOH 49 123 54 HOH HOH A . B 2 HOH 50 124 56 HOH HOH A . B 2 HOH 51 125 58 HOH HOH A . B 2 HOH 52 126 59 HOH HOH A . B 2 HOH 53 127 60 HOH HOH A . B 2 HOH 54 128 62 HOH HOH A . B 2 HOH 55 129 63 HOH HOH A . B 2 HOH 56 130 64 HOH HOH A . B 2 HOH 57 131 65 HOH HOH A . B 2 HOH 58 132 66 HOH HOH A . B 2 HOH 59 133 67 HOH HOH A . B 2 HOH 60 134 68 HOH HOH A . B 2 HOH 61 135 69 HOH HOH A . B 2 HOH 62 136 70 HOH HOH A . B 2 HOH 63 137 71 HOH HOH A . B 2 HOH 64 138 72 HOH HOH A . B 2 HOH 65 139 74 HOH HOH A . B 2 HOH 66 140 76 HOH HOH A . B 2 HOH 67 141 78 HOH HOH A . B 2 HOH 68 142 81 HOH HOH A . B 2 HOH 69 143 91 HOH HOH A . B 2 HOH 70 144 92 HOH HOH A . B 2 HOH 71 145 93 HOH HOH A . B 2 HOH 72 146 95 HOH HOH A . B 2 HOH 73 147 96 HOH HOH A . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2007-05-29 2 'Structure model' 1 1 2008-05-01 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2017-10-18 5 'Structure model' 1 4 2021-10-20 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' Advisory 3 3 'Structure model' 'Version format compliance' 4 4 'Structure model' 'Refinement description' 5 5 'Structure model' 'Database references' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' software 2 5 'Structure model' database_2 3 5 'Structure model' struct_ref_seq_dif # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_software.name' 2 5 'Structure model' '_database_2.pdbx_DOI' 3 5 'Structure model' '_database_2.pdbx_database_accession' 4 5 'Structure model' '_struct_ref_seq_dif.details' # _pdbx_refine_tls.id 1 _pdbx_refine_tls.details ? _pdbx_refine_tls.method refined _pdbx_refine_tls.origin_x -4.7948 _pdbx_refine_tls.origin_y 18.5089 _pdbx_refine_tls.origin_z -1.2395 _pdbx_refine_tls.T[1][1] -0.0200 _pdbx_refine_tls.T[2][2] -0.0300 _pdbx_refine_tls.T[3][3] 0.0183 _pdbx_refine_tls.T[1][2] -0.0042 _pdbx_refine_tls.T[1][3] 0.0366 _pdbx_refine_tls.T[2][3] 0.0192 _pdbx_refine_tls.L[1][1] 1.3566 _pdbx_refine_tls.L[2][2] 0.8915 _pdbx_refine_tls.L[3][3] 1.1218 _pdbx_refine_tls.L[1][2] 0.1653 _pdbx_refine_tls.L[1][3] -0.5707 _pdbx_refine_tls.L[2][3] -0.0496 _pdbx_refine_tls.S[1][1] -0.0390 _pdbx_refine_tls.S[1][2] -0.0224 _pdbx_refine_tls.S[1][3] -0.1648 _pdbx_refine_tls.S[2][1] 0.0072 _pdbx_refine_tls.S[2][2] -0.0402 _pdbx_refine_tls.S[2][3] -0.0164 _pdbx_refine_tls.S[3][1] -0.0440 _pdbx_refine_tls.S[3][2] 0.0002 _pdbx_refine_tls.S[3][3] 0.0793 _pdbx_refine_tls.pdbx_refine_id 'X-RAY DIFFRACTION' # _pdbx_refine_tls_group.id 1 _pdbx_refine_tls_group.refine_tls_id 1 _pdbx_refine_tls_group.beg_auth_asym_id A _pdbx_refine_tls_group.beg_auth_seq_id 0 _pdbx_refine_tls_group.beg_label_asym_id A _pdbx_refine_tls_group.beg_label_seq_id 1 _pdbx_refine_tls_group.end_auth_asym_id A _pdbx_refine_tls_group.end_auth_seq_id 74 _pdbx_refine_tls_group.end_label_asym_id A _pdbx_refine_tls_group.end_label_seq_id 75 _pdbx_refine_tls_group.selection ? _pdbx_refine_tls_group.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine_tls_group.selection_details ? # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal REFMAC refinement 5.2.0019 ? 1 MAR345 'data collection' software ? 2 HKL-2000 'data reduction' . ? 3 SCALEPACK 'data scaling' . ? 4 PHASER phasing . ? 5 # _pdbx_validate_torsion.id 1 _pdbx_validate_torsion.PDB_model_num 1 _pdbx_validate_torsion.auth_comp_id ASN _pdbx_validate_torsion.auth_asym_id A _pdbx_validate_torsion.auth_seq_id 57 _pdbx_validate_torsion.PDB_ins_code ? _pdbx_validate_torsion.label_alt_id ? _pdbx_validate_torsion.phi -87.15 _pdbx_validate_torsion.psi -76.50 # _pdbx_entity_nonpoly.entity_id 2 _pdbx_entity_nonpoly.name water _pdbx_entity_nonpoly.comp_id HOH #