data_2OFY # _entry.id 2OFY # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.398 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 2OFY pdb_00002ofy 10.2210/pdb2ofy/pdb RCSB RCSB041086 ? ? WWPDB D_1000041086 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2007-01-16 2 'Structure model' 1 1 2008-05-01 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2022-04-13 5 'Structure model' 1 4 2023-12-27 6 'Structure model' 1 5 2024-11-06 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' Advisory 3 3 'Structure model' 'Source and taxonomy' 4 3 'Structure model' 'Version format compliance' 5 4 'Structure model' 'Database references' 6 4 'Structure model' 'Derived calculations' 7 4 'Structure model' 'Structure summary' 8 5 'Structure model' 'Data collection' 9 6 'Structure model' 'Structure summary' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' audit_author 2 4 'Structure model' citation_author 3 4 'Structure model' database_2 4 4 'Structure model' struct_conn 5 4 'Structure model' struct_ref_seq_dif 6 5 'Structure model' chem_comp_atom 7 5 'Structure model' chem_comp_bond 8 6 'Structure model' pdbx_entry_details 9 6 'Structure model' pdbx_modification_feature # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_audit_author.identifier_ORCID' 2 4 'Structure model' '_citation_author.identifier_ORCID' 3 4 'Structure model' '_database_2.pdbx_DOI' 4 4 'Structure model' '_database_2.pdbx_database_accession' 5 4 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 6 4 'Structure model' '_struct_ref_seq_dif.details' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 2OFY _pdbx_database_status.recvd_initial_deposition_date 2007-01-04 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry Y _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # _pdbx_database_related.db_name TargetDB _pdbx_database_related.db_id APC6236 _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Shumilin, I.A.' 1 ? 'Skarina, T.' 2 ? 'Onopriyenko, O.' 3 ? 'Yim, V.' 4 ? 'Chruszcz, M.' 5 ? 'Cymborowski, M.' 6 ? 'Savchenko, A.' 7 ? 'Edwards, A.' 8 ? 'Joachimiak, A.' 9 ? 'Minor, W.' 10 0000-0001-7075-7090 'Midwest Center for Structural Genomics (MCSG)' 11 ? # _citation.id primary _citation.title 'Crystal structure of putative XRE-family transcriptional regulator from Rhodococcus sp.' _citation.journal_abbrev 'To be Published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Shumilin, I.A.' 1 ? primary 'Skarina, T.' 2 ? primary 'Onopriyenko, O.' 3 ? primary 'Yim, V.' 4 ? primary 'Chruszcz, M.' 5 ? primary 'Cymborowski, M.' 6 ? primary 'Savchenko, A.' 7 ? primary 'Edwards, A.' 8 ? primary 'Joachimiak, A.' 9 ? primary 'Minor, W.' 10 0000-0001-7075-7090 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Putative XRE-family transcriptional regulator' 9314.261 2 ? ? ? ? 2 water nat water 18.015 241 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code ;(MSE)VRVPLTAEELERGQRLGELLRSARGD(MSE)S(MSE)VTVAFDAGISVETLRKIETGRIATPAFFTIAAVARVLD LSLDDVAAVVTFGPVSTS ; _entity_poly.pdbx_seq_one_letter_code_can ;MVRVPLTAEELERGQRLGELLRSARGDMSMVTVAFDAGISVETLRKIETGRIATPAFFTIAAVARVLDLSLDDVAAVVTF GPVSTS ; _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier APC6236 # _pdbx_entity_nonpoly.entity_id 2 _pdbx_entity_nonpoly.name water _pdbx_entity_nonpoly.comp_id HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MSE n 1 2 VAL n 1 3 ARG n 1 4 VAL n 1 5 PRO n 1 6 LEU n 1 7 THR n 1 8 ALA n 1 9 GLU n 1 10 GLU n 1 11 LEU n 1 12 GLU n 1 13 ARG n 1 14 GLY n 1 15 GLN n 1 16 ARG n 1 17 LEU n 1 18 GLY n 1 19 GLU n 1 20 LEU n 1 21 LEU n 1 22 ARG n 1 23 SER n 1 24 ALA n 1 25 ARG n 1 26 GLY n 1 27 ASP n 1 28 MSE n 1 29 SER n 1 30 MSE n 1 31 VAL n 1 32 THR n 1 33 VAL n 1 34 ALA n 1 35 PHE n 1 36 ASP n 1 37 ALA n 1 38 GLY n 1 39 ILE n 1 40 SER n 1 41 VAL n 1 42 GLU n 1 43 THR n 1 44 LEU n 1 45 ARG n 1 46 LYS n 1 47 ILE n 1 48 GLU n 1 49 THR n 1 50 GLY n 1 51 ARG n 1 52 ILE n 1 53 ALA n 1 54 THR n 1 55 PRO n 1 56 ALA n 1 57 PHE n 1 58 PHE n 1 59 THR n 1 60 ILE n 1 61 ALA n 1 62 ALA n 1 63 VAL n 1 64 ALA n 1 65 ARG n 1 66 VAL n 1 67 LEU n 1 68 ASP n 1 69 LEU n 1 70 SER n 1 71 LEU n 1 72 ASP n 1 73 ASP n 1 74 VAL n 1 75 ALA n 1 76 ALA n 1 77 VAL n 1 78 VAL n 1 79 THR n 1 80 PHE n 1 81 GLY n 1 82 PRO n 1 83 VAL n 1 84 SER n 1 85 THR n 1 86 SER n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus Rhodococcus _entity_src_gen.pdbx_gene_src_gene RHA1_ro04071 _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain RHA1 _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Rhodococcus sp.' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 101510 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus Escherichia _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21-CodonPlus(DE3)-RP' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type PLASMID _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name p15TV _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 MSE 'L-peptide linking' n SELENOMETHIONINE ? 'C5 H11 N O2 Se' 196.106 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MSE 1 1 ? ? ? A . n A 1 2 VAL 2 2 ? ? ? A . n A 1 3 ARG 3 3 3 ARG ARG A . n A 1 4 VAL 4 4 4 VAL VAL A . n A 1 5 PRO 5 5 5 PRO PRO A . n A 1 6 LEU 6 6 6 LEU LEU A . n A 1 7 THR 7 7 7 THR THR A . n A 1 8 ALA 8 8 8 ALA ALA A . n A 1 9 GLU 9 9 9 GLU GLU A . n A 1 10 GLU 10 10 10 GLU GLU A . n A 1 11 LEU 11 11 11 LEU LEU A . n A 1 12 GLU 12 12 12 GLU GLU A . n A 1 13 ARG 13 13 13 ARG ARG A . n A 1 14 GLY 14 14 14 GLY GLY A . n A 1 15 GLN 15 15 15 GLN GLN A . n A 1 16 ARG 16 16 16 ARG ARG A . n A 1 17 LEU 17 17 17 LEU LEU A . n A 1 18 GLY 18 18 18 GLY GLY A . n A 1 19 GLU 19 19 19 GLU GLU A . n A 1 20 LEU 20 20 20 LEU LEU A . n A 1 21 LEU 21 21 21 LEU LEU A . n A 1 22 ARG 22 22 22 ARG ARG A . n A 1 23 SER 23 23 23 SER SER A . n A 1 24 ALA 24 24 24 ALA ALA A . n A 1 25 ARG 25 25 25 ARG ARG A . n A 1 26 GLY 26 26 26 GLY GLY A . n A 1 27 ASP 27 27 27 ASP ASP A . n A 1 28 MSE 28 28 28 MSE MSE A . n A 1 29 SER 29 29 29 SER SER A . n A 1 30 MSE 30 30 30 MSE MSE A . n A 1 31 VAL 31 31 31 VAL VAL A . n A 1 32 THR 32 32 32 THR THR A . n A 1 33 VAL 33 33 33 VAL VAL A . n A 1 34 ALA 34 34 34 ALA ALA A . n A 1 35 PHE 35 35 35 PHE PHE A . n A 1 36 ASP 36 36 36 ASP ASP A . n A 1 37 ALA 37 37 37 ALA ALA A . n A 1 38 GLY 38 38 38 GLY GLY A . n A 1 39 ILE 39 39 39 ILE ILE A . n A 1 40 SER 40 40 40 SER SER A . n A 1 41 VAL 41 41 41 VAL VAL A . n A 1 42 GLU 42 42 42 GLU GLU A . n A 1 43 THR 43 43 43 THR THR A . n A 1 44 LEU 44 44 44 LEU LEU A . n A 1 45 ARG 45 45 45 ARG ARG A . n A 1 46 LYS 46 46 46 LYS LYS A . n A 1 47 ILE 47 47 47 ILE ILE A . n A 1 48 GLU 48 48 48 GLU GLU A . n A 1 49 THR 49 49 49 THR THR A . n A 1 50 GLY 50 50 50 GLY GLY A . n A 1 51 ARG 51 51 51 ARG ARG A . n A 1 52 ILE 52 52 52 ILE ILE A . n A 1 53 ALA 53 53 53 ALA ALA A . n A 1 54 THR 54 54 54 THR THR A . n A 1 55 PRO 55 55 55 PRO PRO A . n A 1 56 ALA 56 56 56 ALA ALA A . n A 1 57 PHE 57 57 57 PHE PHE A . n A 1 58 PHE 58 58 58 PHE PHE A . n A 1 59 THR 59 59 59 THR THR A . n A 1 60 ILE 60 60 60 ILE ILE A . n A 1 61 ALA 61 61 61 ALA ALA A . n A 1 62 ALA 62 62 62 ALA ALA A . n A 1 63 VAL 63 63 63 VAL VAL A . n A 1 64 ALA 64 64 64 ALA ALA A . n A 1 65 ARG 65 65 65 ARG ARG A . n A 1 66 VAL 66 66 66 VAL VAL A . n A 1 67 LEU 67 67 67 LEU LEU A . n A 1 68 ASP 68 68 68 ASP ASP A . n A 1 69 LEU 69 69 69 LEU LEU A . n A 1 70 SER 70 70 70 SER SER A . n A 1 71 LEU 71 71 71 LEU LEU A . n A 1 72 ASP 72 72 72 ASP ASP A . n A 1 73 ASP 73 73 73 ASP ASP A . n A 1 74 VAL 74 74 74 VAL VAL A . n A 1 75 ALA 75 75 75 ALA ALA A . n A 1 76 ALA 76 76 76 ALA ALA A . n A 1 77 VAL 77 77 77 VAL VAL A . n A 1 78 VAL 78 78 78 VAL VAL A . n A 1 79 THR 79 79 79 THR THR A . n A 1 80 PHE 80 80 80 PHE PHE A . n A 1 81 GLY 81 81 81 GLY GLY A . n A 1 82 PRO 82 82 82 PRO PRO A . n A 1 83 VAL 83 83 83 VAL VAL A . n A 1 84 SER 84 84 84 SER SER A . n A 1 85 THR 85 85 ? ? ? A . n A 1 86 SER 86 86 ? ? ? A . n B 1 1 MSE 1 1 ? ? ? B . n B 1 2 VAL 2 2 ? ? ? B . n B 1 3 ARG 3 3 ? ? ? B . n B 1 4 VAL 4 4 ? ? ? B . n B 1 5 PRO 5 5 5 PRO PRO B . n B 1 6 LEU 6 6 6 LEU LEU B . n B 1 7 THR 7 7 7 THR THR B . n B 1 8 ALA 8 8 8 ALA ALA B . n B 1 9 GLU 9 9 9 GLU GLU B . n B 1 10 GLU 10 10 10 GLU GLU B . n B 1 11 LEU 11 11 11 LEU LEU B . n B 1 12 GLU 12 12 12 GLU GLU B . n B 1 13 ARG 13 13 13 ARG ARG B . n B 1 14 GLY 14 14 14 GLY GLY B . n B 1 15 GLN 15 15 15 GLN GLN B . n B 1 16 ARG 16 16 16 ARG ARG B . n B 1 17 LEU 17 17 17 LEU LEU B . n B 1 18 GLY 18 18 18 GLY GLY B . n B 1 19 GLU 19 19 19 GLU GLU B . n B 1 20 LEU 20 20 20 LEU LEU B . n B 1 21 LEU 21 21 21 LEU LEU B . n B 1 22 ARG 22 22 22 ARG ARG B . n B 1 23 SER 23 23 23 SER SER B . n B 1 24 ALA 24 24 24 ALA ALA B . n B 1 25 ARG 25 25 25 ARG ARG B . n B 1 26 GLY 26 26 26 GLY GLY B . n B 1 27 ASP 27 27 27 ASP ASP B . n B 1 28 MSE 28 28 28 MSE MSE B . n B 1 29 SER 29 29 29 SER SER B . n B 1 30 MSE 30 30 30 MSE MSE B . n B 1 31 VAL 31 31 31 VAL VAL B . n B 1 32 THR 32 32 32 THR THR B . n B 1 33 VAL 33 33 33 VAL VAL B . n B 1 34 ALA 34 34 34 ALA ALA B . n B 1 35 PHE 35 35 35 PHE PHE B . n B 1 36 ASP 36 36 36 ASP ASP B . n B 1 37 ALA 37 37 37 ALA ALA B . n B 1 38 GLY 38 38 38 GLY GLY B . n B 1 39 ILE 39 39 39 ILE ILE B . n B 1 40 SER 40 40 40 SER SER B . n B 1 41 VAL 41 41 41 VAL VAL B . n B 1 42 GLU 42 42 42 GLU GLU B . n B 1 43 THR 43 43 43 THR THR B . n B 1 44 LEU 44 44 44 LEU LEU B . n B 1 45 ARG 45 45 45 ARG ARG B . n B 1 46 LYS 46 46 46 LYS LYS B . n B 1 47 ILE 47 47 47 ILE ILE B . n B 1 48 GLU 48 48 48 GLU GLU B . n B 1 49 THR 49 49 49 THR THR B . n B 1 50 GLY 50 50 50 GLY GLY B . n B 1 51 ARG 51 51 51 ARG ARG B . n B 1 52 ILE 52 52 52 ILE ILE B . n B 1 53 ALA 53 53 53 ALA ALA B . n B 1 54 THR 54 54 54 THR THR B . n B 1 55 PRO 55 55 55 PRO PRO B . n B 1 56 ALA 56 56 56 ALA ALA B . n B 1 57 PHE 57 57 57 PHE PHE B . n B 1 58 PHE 58 58 58 PHE PHE B . n B 1 59 THR 59 59 59 THR THR B . n B 1 60 ILE 60 60 60 ILE ILE B . n B 1 61 ALA 61 61 61 ALA ALA B . n B 1 62 ALA 62 62 62 ALA ALA B . n B 1 63 VAL 63 63 63 VAL VAL B . n B 1 64 ALA 64 64 64 ALA ALA B . n B 1 65 ARG 65 65 65 ARG ARG B . n B 1 66 VAL 66 66 66 VAL VAL B . n B 1 67 LEU 67 67 67 LEU LEU B . n B 1 68 ASP 68 68 68 ASP ASP B . n B 1 69 LEU 69 69 69 LEU LEU B . n B 1 70 SER 70 70 70 SER SER B . n B 1 71 LEU 71 71 71 LEU LEU B . n B 1 72 ASP 72 72 72 ASP ASP B . n B 1 73 ASP 73 73 73 ASP ASP B . n B 1 74 VAL 74 74 74 VAL VAL B . n B 1 75 ALA 75 75 75 ALA ALA B . n B 1 76 ALA 76 76 76 ALA ALA B . n B 1 77 VAL 77 77 77 VAL VAL B . n B 1 78 VAL 78 78 78 VAL VAL B . n B 1 79 THR 79 79 79 THR THR B . n B 1 80 PHE 80 80 80 PHE PHE B . n B 1 81 GLY 81 81 81 GLY GLY B . n B 1 82 PRO 82 82 82 PRO PRO B . n B 1 83 VAL 83 83 83 VAL VAL B . n B 1 84 SER 84 84 84 SER SER B . n B 1 85 THR 85 85 ? ? ? B . n B 1 86 SER 86 86 ? ? ? B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 HOH 1 87 2 HOH HOH A . C 2 HOH 2 88 4 HOH HOH A . C 2 HOH 3 89 5 HOH HOH A . C 2 HOH 4 90 7 HOH HOH A . C 2 HOH 5 91 8 HOH HOH A . C 2 HOH 6 92 9 HOH HOH A . C 2 HOH 7 93 11 HOH HOH A . C 2 HOH 8 94 12 HOH HOH A . C 2 HOH 9 95 13 HOH HOH A . C 2 HOH 10 96 14 HOH HOH A . C 2 HOH 11 97 15 HOH HOH A . C 2 HOH 12 98 16 HOH HOH A . C 2 HOH 13 99 19 HOH HOH A . C 2 HOH 14 100 20 HOH HOH A . C 2 HOH 15 101 21 HOH HOH A . C 2 HOH 16 102 23 HOH HOH A . C 2 HOH 17 103 25 HOH HOH A . C 2 HOH 18 104 27 HOH HOH A . C 2 HOH 19 105 28 HOH HOH A . C 2 HOH 20 106 29 HOH HOH A . C 2 HOH 21 107 34 HOH HOH A . C 2 HOH 22 108 35 HOH HOH A . C 2 HOH 23 109 36 HOH HOH A . C 2 HOH 24 110 38 HOH HOH A . C 2 HOH 25 111 40 HOH HOH A . C 2 HOH 26 112 41 HOH HOH A . C 2 HOH 27 113 42 HOH HOH A . C 2 HOH 28 114 47 HOH HOH A . C 2 HOH 29 115 48 HOH HOH A . C 2 HOH 30 116 49 HOH HOH A . C 2 HOH 31 117 50 HOH HOH A . C 2 HOH 32 118 51 HOH HOH A . C 2 HOH 33 119 53 HOH HOH A . C 2 HOH 34 120 56 HOH HOH A . C 2 HOH 35 121 57 HOH HOH A . C 2 HOH 36 122 58 HOH HOH A . C 2 HOH 37 123 60 HOH HOH A . C 2 HOH 38 124 64 HOH HOH A . C 2 HOH 39 125 65 HOH HOH A . C 2 HOH 40 126 66 HOH HOH A . C 2 HOH 41 127 67 HOH HOH A . C 2 HOH 42 128 69 HOH HOH A . C 2 HOH 43 129 73 HOH HOH A . C 2 HOH 44 130 75 HOH HOH A . C 2 HOH 45 131 77 HOH HOH A . C 2 HOH 46 132 80 HOH HOH A . C 2 HOH 47 133 84 HOH HOH A . C 2 HOH 48 134 86 HOH HOH A . C 2 HOH 49 135 88 HOH HOH A . C 2 HOH 50 136 89 HOH HOH A . C 2 HOH 51 137 94 HOH HOH A . C 2 HOH 52 138 95 HOH HOH A . C 2 HOH 53 139 100 HOH HOH A . C 2 HOH 54 140 102 HOH HOH A . C 2 HOH 55 141 103 HOH HOH A . C 2 HOH 56 142 104 HOH HOH A . C 2 HOH 57 143 105 HOH HOH A . C 2 HOH 58 144 108 HOH HOH A . C 2 HOH 59 145 109 HOH HOH A . C 2 HOH 60 146 111 HOH HOH A . C 2 HOH 61 147 112 HOH HOH A . C 2 HOH 62 148 113 HOH HOH A . C 2 HOH 63 149 114 HOH HOH A . C 2 HOH 64 150 115 HOH HOH A . C 2 HOH 65 151 117 HOH HOH A . C 2 HOH 66 152 118 HOH HOH A . C 2 HOH 67 153 119 HOH HOH A . C 2 HOH 68 154 120 HOH HOH A . C 2 HOH 69 155 125 HOH HOH A . C 2 HOH 70 156 126 HOH HOH A . C 2 HOH 71 157 130 HOH HOH A . C 2 HOH 72 158 131 HOH HOH A . C 2 HOH 73 159 132 HOH HOH A . C 2 HOH 74 160 134 HOH HOH A . C 2 HOH 75 161 135 HOH HOH A . C 2 HOH 76 162 136 HOH HOH A . C 2 HOH 77 163 137 HOH HOH A . C 2 HOH 78 164 139 HOH HOH A . C 2 HOH 79 165 142 HOH HOH A . C 2 HOH 80 166 143 HOH HOH A . C 2 HOH 81 167 144 HOH HOH A . C 2 HOH 82 168 147 HOH HOH A . C 2 HOH 83 169 148 HOH HOH A . C 2 HOH 84 170 149 HOH HOH A . C 2 HOH 85 171 150 HOH HOH A . C 2 HOH 86 172 151 HOH HOH A . C 2 HOH 87 173 152 HOH HOH A . C 2 HOH 88 174 153 HOH HOH A . C 2 HOH 89 175 154 HOH HOH A . C 2 HOH 90 176 156 HOH HOH A . C 2 HOH 91 177 159 HOH HOH A . C 2 HOH 92 178 160 HOH HOH A . C 2 HOH 93 179 161 HOH HOH A . C 2 HOH 94 180 162 HOH HOH A . C 2 HOH 95 181 164 HOH HOH A . C 2 HOH 96 182 165 HOH HOH A . C 2 HOH 97 183 170 HOH HOH A . C 2 HOH 98 184 171 HOH HOH A . C 2 HOH 99 185 176 HOH HOH A . C 2 HOH 100 186 177 HOH HOH A . C 2 HOH 101 187 180 HOH HOH A . C 2 HOH 102 188 182 HOH HOH A . C 2 HOH 103 189 183 HOH HOH A . C 2 HOH 104 190 185 HOH HOH A . C 2 HOH 105 191 188 HOH HOH A . C 2 HOH 106 192 189 HOH HOH A . C 2 HOH 107 193 190 HOH HOH A . C 2 HOH 108 194 192 HOH HOH A . C 2 HOH 109 195 193 HOH HOH A . C 2 HOH 110 196 194 HOH HOH A . C 2 HOH 111 197 195 HOH HOH A . C 2 HOH 112 198 198 HOH HOH A . C 2 HOH 113 199 200 HOH HOH A . C 2 HOH 114 200 202 HOH HOH A . C 2 HOH 115 201 204 HOH HOH A . C 2 HOH 116 202 206 HOH HOH A . C 2 HOH 117 203 208 HOH HOH A . C 2 HOH 118 204 212 HOH HOH A . C 2 HOH 119 205 215 HOH HOH A . C 2 HOH 120 206 217 HOH HOH A . C 2 HOH 121 207 220 HOH HOH A . C 2 HOH 122 208 222 HOH HOH A . C 2 HOH 123 209 224 HOH HOH A . C 2 HOH 124 210 227 HOH HOH A . C 2 HOH 125 211 230 HOH HOH A . C 2 HOH 126 212 234 HOH HOH A . C 2 HOH 127 213 238 HOH HOH A . D 2 HOH 1 87 1 HOH HOH B . D 2 HOH 2 88 3 HOH HOH B . D 2 HOH 3 89 6 HOH HOH B . D 2 HOH 4 90 10 HOH HOH B . D 2 HOH 5 91 17 HOH HOH B . D 2 HOH 6 92 18 HOH HOH B . D 2 HOH 7 93 22 HOH HOH B . D 2 HOH 8 94 24 HOH HOH B . D 2 HOH 9 95 26 HOH HOH B . D 2 HOH 10 96 30 HOH HOH B . D 2 HOH 11 97 31 HOH HOH B . D 2 HOH 12 98 32 HOH HOH B . D 2 HOH 13 99 33 HOH HOH B . D 2 HOH 14 100 37 HOH HOH B . D 2 HOH 15 101 39 HOH HOH B . D 2 HOH 16 102 43 HOH HOH B . D 2 HOH 17 103 44 HOH HOH B . D 2 HOH 18 104 45 HOH HOH B . D 2 HOH 19 105 46 HOH HOH B . D 2 HOH 20 106 52 HOH HOH B . D 2 HOH 21 107 54 HOH HOH B . D 2 HOH 22 108 55 HOH HOH B . D 2 HOH 23 109 59 HOH HOH B . D 2 HOH 24 110 61 HOH HOH B . D 2 HOH 25 111 62 HOH HOH B . D 2 HOH 26 112 63 HOH HOH B . D 2 HOH 27 113 68 HOH HOH B . D 2 HOH 28 114 70 HOH HOH B . D 2 HOH 29 115 71 HOH HOH B . D 2 HOH 30 116 72 HOH HOH B . D 2 HOH 31 117 74 HOH HOH B . D 2 HOH 32 118 76 HOH HOH B . D 2 HOH 33 119 78 HOH HOH B . D 2 HOH 34 120 79 HOH HOH B . D 2 HOH 35 121 81 HOH HOH B . D 2 HOH 36 122 82 HOH HOH B . D 2 HOH 37 123 83 HOH HOH B . D 2 HOH 38 124 85 HOH HOH B . D 2 HOH 39 125 87 HOH HOH B . D 2 HOH 40 126 90 HOH HOH B . D 2 HOH 41 127 91 HOH HOH B . D 2 HOH 42 128 92 HOH HOH B . D 2 HOH 43 129 93 HOH HOH B . D 2 HOH 44 130 96 HOH HOH B . D 2 HOH 45 131 97 HOH HOH B . D 2 HOH 46 132 98 HOH HOH B . D 2 HOH 47 133 99 HOH HOH B . D 2 HOH 48 134 101 HOH HOH B . D 2 HOH 49 135 106 HOH HOH B . D 2 HOH 50 136 107 HOH HOH B . D 2 HOH 51 137 110 HOH HOH B . D 2 HOH 52 138 116 HOH HOH B . D 2 HOH 53 139 121 HOH HOH B . D 2 HOH 54 140 122 HOH HOH B . D 2 HOH 55 141 123 HOH HOH B . D 2 HOH 56 142 124 HOH HOH B . D 2 HOH 57 143 127 HOH HOH B . D 2 HOH 58 144 128 HOH HOH B . D 2 HOH 59 145 129 HOH HOH B . D 2 HOH 60 146 133 HOH HOH B . D 2 HOH 61 147 138 HOH HOH B . D 2 HOH 62 148 140 HOH HOH B . D 2 HOH 63 149 141 HOH HOH B . D 2 HOH 64 150 145 HOH HOH B . D 2 HOH 65 151 146 HOH HOH B . D 2 HOH 66 152 155 HOH HOH B . D 2 HOH 67 153 157 HOH HOH B . D 2 HOH 68 154 158 HOH HOH B . D 2 HOH 69 155 163 HOH HOH B . D 2 HOH 70 156 166 HOH HOH B . D 2 HOH 71 157 167 HOH HOH B . D 2 HOH 72 158 168 HOH HOH B . D 2 HOH 73 159 169 HOH HOH B . D 2 HOH 74 160 172 HOH HOH B . D 2 HOH 75 161 173 HOH HOH B . D 2 HOH 76 162 174 HOH HOH B . D 2 HOH 77 163 175 HOH HOH B . D 2 HOH 78 164 178 HOH HOH B . D 2 HOH 79 165 179 HOH HOH B . D 2 HOH 80 166 181 HOH HOH B . D 2 HOH 81 167 184 HOH HOH B . D 2 HOH 82 168 186 HOH HOH B . D 2 HOH 83 169 187 HOH HOH B . D 2 HOH 84 170 191 HOH HOH B . D 2 HOH 85 171 196 HOH HOH B . D 2 HOH 86 172 197 HOH HOH B . D 2 HOH 87 173 199 HOH HOH B . D 2 HOH 88 174 201 HOH HOH B . D 2 HOH 89 175 203 HOH HOH B . D 2 HOH 90 176 205 HOH HOH B . D 2 HOH 91 177 207 HOH HOH B . D 2 HOH 92 178 209 HOH HOH B . D 2 HOH 93 179 210 HOH HOH B . D 2 HOH 94 180 211 HOH HOH B . D 2 HOH 95 181 213 HOH HOH B . D 2 HOH 96 182 214 HOH HOH B . D 2 HOH 97 183 216 HOH HOH B . D 2 HOH 98 184 218 HOH HOH B . D 2 HOH 99 185 219 HOH HOH B . D 2 HOH 100 186 221 HOH HOH B . D 2 HOH 101 187 223 HOH HOH B . D 2 HOH 102 188 225 HOH HOH B . D 2 HOH 103 189 226 HOH HOH B . D 2 HOH 104 190 228 HOH HOH B . D 2 HOH 105 191 229 HOH HOH B . D 2 HOH 106 192 231 HOH HOH B . D 2 HOH 107 193 232 HOH HOH B . D 2 HOH 108 194 233 HOH HOH B . D 2 HOH 109 195 235 HOH HOH B . D 2 HOH 110 196 237 HOH HOH B . D 2 HOH 111 197 239 HOH HOH B . D 2 HOH 112 198 240 HOH HOH B . D 2 HOH 113 199 241 HOH HOH B . D 2 HOH 114 200 242 HOH HOH B . # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal REFMAC refinement 5.2.0005 ? 1 HKL-3000 'data collection' . ? 2 HKL-3000 'data reduction' . ? 3 HKL-3000 'data scaling' . ? 4 HKL-3000 phasing . ? 5 SHELXD phasing . ? 6 SHELXE 'model building' . ? 7 MLPHARE phasing . ? 8 DM phasing . ? 9 SOLVE phasing . ? 10 RESOLVE phasing . ? 11 Coot 'model building' . ? 12 O 'model building' . ? 13 ARP/wARP 'model building' . ? 14 CCP4 phasing . ? 15 # _cell.entry_id 2OFY _cell.length_a 42.540 _cell.length_b 46.073 _cell.length_c 81.842 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 2OFY _symmetry.space_group_name_H-M 'P 21 21 21' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? # _exptl.entry_id 2OFY _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.15 _exptl_crystal.density_percent_sol 42.84 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 295 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 7.5 _exptl_crystal_grow.pdbx_details '25% PEG 3350, 0.2M Lithium sulfate, 0.1M HEPES, pH 7.5, VAPOR DIFFUSION, HANGING DROP, temperature 295K' _exptl_crystal_grow.pdbx_pH_range . # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type SBC-3 _diffrn_detector.pdbx_collection_date 2006-06-10 _diffrn_detector.details mirrors # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'SI 111 CHANNEL' _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.97904 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'APS BEAMLINE 19-BM' _diffrn_source.pdbx_synchrotron_site APS _diffrn_source.pdbx_synchrotron_beamline 19-BM _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 0.97904 # _reflns.entry_id 2OFY _reflns.observed_criterion_sigma_F -3.0 _reflns.observed_criterion_sigma_I ? _reflns.d_resolution_high 1.7 _reflns.d_resolution_low 50.0 _reflns.number_all 18284 _reflns.number_obs 18279 _reflns.percent_possible_obs 99.7 _reflns.pdbx_Rmerge_I_obs 0.055 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 56 _reflns.B_iso_Wilson_estimate 30.8 _reflns.pdbx_redundancy 8.4 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 1.70 _reflns_shell.d_res_low 1.76 _reflns_shell.percent_possible_all 98.7 _reflns_shell.Rmerge_I_obs 0.407 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 2.8 _reflns_shell.pdbx_redundancy 6.0 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all 1770 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.entry_id 2OFY _refine.ls_number_reflns_obs 17299 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 0 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 40.93 _refine.ls_d_res_high 1.70 _refine.ls_percent_reflns_obs 99.70 _refine.ls_R_factor_obs 0.20528 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.20353 _refine.ls_R_factor_R_free 0.23864 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 5.1 _refine.ls_number_reflns_R_free 927 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.959 _refine.correlation_coeff_Fo_to_Fc_free 0.954 _refine.B_iso_mean 30.802 _refine.aniso_B[1][1] 1.36 _refine.aniso_B[2][2] 0.50 _refine.aniso_B[3][3] -1.86 _refine.aniso_B[1][2] 0.00 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details 'BABINET MODEL WITH MASK' _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.20 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS' _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct SAD _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R 0.127 _refine.pdbx_overall_ESU_R_Free 0.121 _refine.overall_SU_ML 0.091 _refine.overall_SU_B 5.256 _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_TLS_residual_ADP_flag 'LIKELY RESIDUAL' _refine.pdbx_diffrn_id 1 _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1208 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 241 _refine_hist.number_atoms_total 1449 _refine_hist.d_res_high 1.70 _refine_hist.d_res_low 40.93 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 0.018 0.022 ? 1245 'X-RAY DIFFRACTION' ? r_bond_other_d ? ? ? ? 'X-RAY DIFFRACTION' ? r_angle_refined_deg 1.740 1.986 ? 1690 'X-RAY DIFFRACTION' ? r_angle_other_deg ? ? ? ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 5.343 5.000 ? 166 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 29.711 21.600 ? 50 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 15.665 15.000 ? 214 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 16.259 15.000 ? 17 'X-RAY DIFFRACTION' ? r_chiral_restr 0.126 0.200 ? 212 'X-RAY DIFFRACTION' ? r_gen_planes_refined 0.008 0.020 ? 913 'X-RAY DIFFRACTION' ? r_gen_planes_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbd_refined 0.252 0.200 ? 715 'X-RAY DIFFRACTION' ? r_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_refined 0.315 0.200 ? 901 'X-RAY DIFFRACTION' ? r_nbtor_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined 0.175 0.200 ? 177 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined 0.244 0.200 ? 69 'X-RAY DIFFRACTION' ? r_symmetry_vdw_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined 0.184 0.200 ? 29 'X-RAY DIFFRACTION' ? r_symmetry_hbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcbond_it 1.689 1.500 ? 831 'X-RAY DIFFRACTION' ? r_mcbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcangle_it 1.747 2.000 ? 1308 'X-RAY DIFFRACTION' ? r_scbond_it 3.447 3.000 ? 444 'X-RAY DIFFRACTION' ? r_scangle_it 4.541 4.500 ? 379 'X-RAY DIFFRACTION' ? r_rigid_bond_restr ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_free ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_bonded ? ? ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 1.70 _refine_ls_shell.d_res_low 1.745 _refine_ls_shell.number_reflns_R_work 1193 _refine_ls_shell.R_factor_R_work 0.303 _refine_ls_shell.percent_reflns_obs 96.58 _refine_ls_shell.R_factor_R_free 0.38 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 77 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _database_PDB_matrix.entry_id 2OFY _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _struct.entry_id 2OFY _struct.title 'Crystal structure of putative XRE-family transcriptional regulator from Rhodococcus sp.' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2OFY _struct_keywords.pdbx_keywords TRANSCRIPTION _struct_keywords.text ;TRANSCRIPTION REGULATOR, XRE-FAMILY, STRUCTURAL GENOMICS, PSI, PROTEIN STRUCTURE INITIATIVE, MIDWEST CENTER FOR STRUCTURAL GENOMICS, MCSG, TRANSCRIPTION ; # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 2 ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code Q0S9B8_RHOSR _struct_ref.pdbx_db_accession Q0S9B8 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;MVRVPLTAEELERGQRLGELLRSARGDMSMVTVAFDAGISVETLRKIETGRIATPAFFTIAAVARVLDLSLDDVAAVVTF GPVSTS ; _struct_ref.pdbx_align_begin 1 _struct_ref.pdbx_db_isoform ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 2OFY A 1 ? 86 ? Q0S9B8 1 ? 86 ? 1 86 2 1 2OFY B 1 ? 86 ? Q0S9B8 1 ? 86 ? 1 86 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 2OFY MSE A 1 ? UNP Q0S9B8 MET 1 'modified residue' 1 1 1 2OFY MSE A 28 ? UNP Q0S9B8 MET 28 'modified residue' 28 2 1 2OFY MSE A 30 ? UNP Q0S9B8 MET 30 'modified residue' 30 3 2 2OFY MSE B 1 ? UNP Q0S9B8 MET 1 'modified residue' 1 4 2 2OFY MSE B 28 ? UNP Q0S9B8 MET 28 'modified residue' 28 5 2 2OFY MSE B 30 ? UNP Q0S9B8 MET 30 'modified residue' 30 6 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 1720 ? 1 MORE -15 ? 1 'SSA (A^2)' 9180 ? # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _struct_biol.id 1 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 THR A 7 ? GLY A 26 ? THR A 7 GLY A 26 1 ? 20 HELX_P HELX_P2 2 SER A 29 ? GLY A 38 ? SER A 29 GLY A 38 1 ? 10 HELX_P HELX_P3 3 SER A 40 ? THR A 49 ? SER A 40 THR A 49 1 ? 10 HELX_P HELX_P4 4 ALA A 56 ? LEU A 67 ? ALA A 56 LEU A 67 1 ? 12 HELX_P HELX_P5 5 SER A 70 ? ALA A 76 ? SER A 70 ALA A 76 1 ? 7 HELX_P HELX_P6 6 THR B 7 ? GLY B 26 ? THR B 7 GLY B 26 1 ? 20 HELX_P HELX_P7 7 SER B 29 ? GLY B 38 ? SER B 29 GLY B 38 1 ? 10 HELX_P HELX_P8 8 SER B 40 ? THR B 49 ? SER B 40 THR B 49 1 ? 10 HELX_P HELX_P9 9 ALA B 56 ? ASP B 68 ? ALA B 56 ASP B 68 1 ? 13 HELX_P HELX_P10 10 SER B 70 ? GLY B 81 ? SER B 70 GLY B 81 1 ? 12 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A ASP 27 C ? ? ? 1_555 A MSE 28 N ? ? A ASP 27 A MSE 28 1_555 ? ? ? ? ? ? ? 1.325 ? ? covale2 covale both ? A MSE 28 C ? ? ? 1_555 A SER 29 N ? ? A MSE 28 A SER 29 1_555 ? ? ? ? ? ? ? 1.331 ? ? covale3 covale both ? A SER 29 C ? ? ? 1_555 A MSE 30 N ? ? A SER 29 A MSE 30 1_555 ? ? ? ? ? ? ? 1.330 ? ? covale4 covale both ? A MSE 30 C ? ? ? 1_555 A VAL 31 N ? ? A MSE 30 A VAL 31 1_555 ? ? ? ? ? ? ? 1.331 ? ? covale5 covale both ? B ASP 27 C ? ? ? 1_555 B MSE 28 N ? ? B ASP 27 B MSE 28 1_555 ? ? ? ? ? ? ? 1.334 ? ? covale6 covale both ? B MSE 28 C ? ? ? 1_555 B SER 29 N ? ? B MSE 28 B SER 29 1_555 ? ? ? ? ? ? ? 1.328 ? ? covale7 covale both ? B SER 29 C ? ? ? 1_555 B MSE 30 N ? ? B SER 29 B MSE 30 1_555 ? ? ? ? ? ? ? 1.327 ? ? covale8 covale both ? B MSE 30 C ? ? ? 1_555 B VAL 31 N ? ? B MSE 30 B VAL 31 1_555 ? ? ? ? ? ? ? 1.321 ? ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _pdbx_modification_feature.ordinal _pdbx_modification_feature.label_comp_id _pdbx_modification_feature.label_asym_id _pdbx_modification_feature.label_seq_id _pdbx_modification_feature.label_alt_id _pdbx_modification_feature.modified_residue_label_comp_id _pdbx_modification_feature.modified_residue_label_asym_id _pdbx_modification_feature.modified_residue_label_seq_id _pdbx_modification_feature.modified_residue_label_alt_id _pdbx_modification_feature.auth_comp_id _pdbx_modification_feature.auth_asym_id _pdbx_modification_feature.auth_seq_id _pdbx_modification_feature.PDB_ins_code _pdbx_modification_feature.symmetry _pdbx_modification_feature.modified_residue_auth_comp_id _pdbx_modification_feature.modified_residue_auth_asym_id _pdbx_modification_feature.modified_residue_auth_seq_id _pdbx_modification_feature.modified_residue_PDB_ins_code _pdbx_modification_feature.modified_residue_symmetry _pdbx_modification_feature.comp_id_linking_atom _pdbx_modification_feature.modified_residue_id_linking_atom _pdbx_modification_feature.modified_residue_id _pdbx_modification_feature.ref_pcm_id _pdbx_modification_feature.ref_comp_id _pdbx_modification_feature.type _pdbx_modification_feature.category 1 MSE A 28 ? . . . . MSE A 28 ? 1_555 . . . . . . . MET 1 MSE Selenomethionine 'Named protein modification' 2 MSE A 30 ? . . . . MSE A 30 ? 1_555 . . . . . . . MET 1 MSE Selenomethionine 'Named protein modification' 3 MSE B 28 ? . . . . MSE B 28 ? 1_555 . . . . . . . MET 1 MSE Selenomethionine 'Named protein modification' 4 MSE B 30 ? . . . . MSE B 30 ? 1_555 . . . . . . . MET 1 MSE Selenomethionine 'Named protein modification' # loop_ _struct_mon_prot_cis.pdbx_id _struct_mon_prot_cis.label_comp_id _struct_mon_prot_cis.label_seq_id _struct_mon_prot_cis.label_asym_id _struct_mon_prot_cis.label_alt_id _struct_mon_prot_cis.pdbx_PDB_ins_code _struct_mon_prot_cis.auth_comp_id _struct_mon_prot_cis.auth_seq_id _struct_mon_prot_cis.auth_asym_id _struct_mon_prot_cis.pdbx_label_comp_id_2 _struct_mon_prot_cis.pdbx_label_seq_id_2 _struct_mon_prot_cis.pdbx_label_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_ins_code_2 _struct_mon_prot_cis.pdbx_auth_comp_id_2 _struct_mon_prot_cis.pdbx_auth_seq_id_2 _struct_mon_prot_cis.pdbx_auth_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_model_num _struct_mon_prot_cis.pdbx_omega_angle 1 VAL 83 A . ? VAL 83 A SER 84 A ? SER 84 A 1 21.07 2 VAL 83 B . ? VAL 83 B SER 84 B ? SER 84 B 1 6.10 # _pdbx_entry_details.entry_id 2OFY _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? _pdbx_entry_details.has_ligand_of_interest ? _pdbx_entry_details.has_protein_modification Y # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 OE2 A GLU 19 ? A O A HOH 177 ? ? 2.12 2 1 O B HOH 141 ? ? O B HOH 196 ? ? 2.15 # _pdbx_validate_symm_contact.id 1 _pdbx_validate_symm_contact.PDB_model_num 1 _pdbx_validate_symm_contact.auth_atom_id_1 CG2 _pdbx_validate_symm_contact.auth_asym_id_1 A _pdbx_validate_symm_contact.auth_comp_id_1 THR _pdbx_validate_symm_contact.auth_seq_id_1 79 _pdbx_validate_symm_contact.PDB_ins_code_1 ? _pdbx_validate_symm_contact.label_alt_id_1 ? _pdbx_validate_symm_contact.site_symmetry_1 1_555 _pdbx_validate_symm_contact.auth_atom_id_2 O _pdbx_validate_symm_contact.auth_asym_id_2 B _pdbx_validate_symm_contact.auth_comp_id_2 HOH _pdbx_validate_symm_contact.auth_seq_id_2 155 _pdbx_validate_symm_contact.PDB_ins_code_2 ? _pdbx_validate_symm_contact.label_alt_id_2 ? _pdbx_validate_symm_contact.site_symmetry_2 4_555 _pdbx_validate_symm_contact.dist 2.19 # _pdbx_validate_peptide_omega.id 1 _pdbx_validate_peptide_omega.PDB_model_num 1 _pdbx_validate_peptide_omega.auth_comp_id_1 PRO _pdbx_validate_peptide_omega.auth_asym_id_1 A _pdbx_validate_peptide_omega.auth_seq_id_1 82 _pdbx_validate_peptide_omega.PDB_ins_code_1 ? _pdbx_validate_peptide_omega.label_alt_id_1 ? _pdbx_validate_peptide_omega.auth_comp_id_2 VAL _pdbx_validate_peptide_omega.auth_asym_id_2 A _pdbx_validate_peptide_omega.auth_seq_id_2 83 _pdbx_validate_peptide_omega.PDB_ins_code_2 ? _pdbx_validate_peptide_omega.label_alt_id_2 ? _pdbx_validate_peptide_omega.omega -149.61 # _pdbx_SG_project.id 1 _pdbx_SG_project.project_name 'PSI, Protein Structure Initiative' _pdbx_SG_project.full_name_of_center 'Midwest Center for Structural Genomics' _pdbx_SG_project.initial_of_center MCSG # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A MSE 28 A MSE 28 ? MET SELENOMETHIONINE 2 A MSE 30 A MSE 30 ? MET SELENOMETHIONINE 3 B MSE 28 B MSE 28 ? MET SELENOMETHIONINE 4 B MSE 30 B MSE 30 ? MET SELENOMETHIONINE # loop_ _pdbx_refine_tls.id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][2] _pdbx_refine_tls.S[3][3] _pdbx_refine_tls.pdbx_refine_id 1 ? refined 21.1330 10.1937 12.4298 0.0340 0.0419 0.0253 -0.0271 -0.0136 0.0763 11.8834 5.1460 4.1384 4.3788 0.1201 0.2176 -0.3670 0.4659 -0.1534 -0.2525 0.5721 0.1224 0.4977 -0.3695 -0.2050 'X-RAY DIFFRACTION' 2 ? refined 27.6051 23.3422 22.4451 0.0624 0.1668 0.0959 0.0871 -0.0205 -0.0758 3.9230 4.6712 3.8100 -0.1091 2.6384 1.7290 -0.1903 -0.7107 0.0910 0.4441 0.2196 -0.0906 0.0186 0.1626 -0.0293 'X-RAY DIFFRACTION' 3 ? refined 21.5655 19.7744 14.3492 -0.0148 0.0059 0.0327 0.0363 0.0041 0.0057 5.3782 3.6917 4.0767 0.2707 1.0128 -0.4122 -0.2661 -0.3284 -0.1966 -0.0051 0.3130 0.2200 -0.0579 -0.3606 -0.0469 'X-RAY DIFFRACTION' 4 ? refined 33.1500 25.6351 12.5909 -0.0071 0.0337 0.0800 -0.0420 -0.0055 -0.0724 20.5536 14.2100 18.4082 -4.1501 -6.1608 5.5599 -0.2935 -0.5037 0.5318 -0.2870 0.4571 -0.3613 -0.7626 1.1322 -0.1636 'X-RAY DIFFRACTION' 5 ? refined 26.4803 12.5559 1.7203 0.0484 -0.0771 -0.0274 -0.0435 -0.1140 -0.0295 9.4455 5.0175 5.3567 -2.4016 -0.7717 -4.6338 0.0793 0.5217 -0.8651 -1.3337 0.6401 0.5873 0.9295 -0.0654 -0.7194 'X-RAY DIFFRACTION' 6 ? refined 15.4811 34.2576 5.0009 0.1417 -0.3152 0.0743 0.0246 -0.0521 -0.1179 21.7461 24.7229 53.0832 -9.8211 -20.6638 27.6661 -0.7092 -0.8410 1.5942 2.0981 -0.2343 0.4488 0.9211 -0.9312 0.9436 'X-RAY DIFFRACTION' 7 ? refined 15.9433 19.6610 -9.3880 0.1263 0.1265 0.0366 -0.1523 -0.0038 0.0043 1.8909 11.2486 0.8052 4.3594 0.7928 1.0748 0.1451 0.8743 0.1793 -0.2452 -0.2335 0.0884 -0.0492 -0.3934 0.0885 'X-RAY DIFFRACTION' 8 ? refined 9.3295 23.8472 -2.1450 0.0300 0.0691 0.0593 -0.0462 -0.0427 0.0398 6.1278 14.6548 6.5559 1.1693 -3.1218 1.8786 -0.1718 0.3991 0.4572 -0.5104 0.1985 0.5589 -0.0209 -0.8394 -0.0267 'X-RAY DIFFRACTION' 9 ? refined 22.8076 22.0786 0.3762 0.0598 -0.0258 0.0276 -0.0714 -0.0262 0.0207 3.8119 3.3662 8.8963 1.5747 0.8577 0.0126 -0.3155 0.3299 0.1821 -0.2359 0.2890 -0.0803 -0.3126 0.1256 0.0265 'X-RAY DIFFRACTION' 10 ? refined 25.4008 36.6321 0.0545 -0.0012 -0.1423 0.1449 0.0597 -0.0954 -0.0252 34.9127 43.2700 195.8622 18.7132 -15.9710 -47.3651 0.5118 0.7823 0.7543 0.1281 0.4117 0.8303 0.0521 2.9189 -0.9236 'X-RAY DIFFRACTION' # loop_ _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.selection _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.selection_details 1 1 A 3 A 3 A 23 A 23 ? 'X-RAY DIFFRACTION' ? 2 2 A 24 A 24 A 46 A 46 ? 'X-RAY DIFFRACTION' ? 3 3 A 47 A 47 A 64 A 64 ? 'X-RAY DIFFRACTION' ? 4 4 A 65 A 65 A 69 A 69 ? 'X-RAY DIFFRACTION' ? 5 5 A 70 A 70 A 84 A 84 ? 'X-RAY DIFFRACTION' ? 6 6 B 5 B 5 B 19 B 19 ? 'X-RAY DIFFRACTION' ? 7 7 B 20 B 20 B 39 B 39 ? 'X-RAY DIFFRACTION' ? 8 8 B 40 B 40 B 52 B 52 ? 'X-RAY DIFFRACTION' ? 9 9 B 53 B 53 B 77 B 77 ? 'X-RAY DIFFRACTION' ? 10 10 B 78 B 78 B 84 B 84 ? 'X-RAY DIFFRACTION' ? # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A MSE 1 ? A MSE 1 2 1 Y 1 A VAL 2 ? A VAL 2 3 1 Y 1 A THR 85 ? A THR 85 4 1 Y 1 A SER 86 ? A SER 86 5 1 Y 1 B MSE 1 ? B MSE 1 6 1 Y 1 B VAL 2 ? B VAL 2 7 1 Y 1 B ARG 3 ? B ARG 3 8 1 Y 1 B VAL 4 ? B VAL 4 9 1 Y 1 B THR 85 ? B THR 85 10 1 Y 1 B SER 86 ? B SER 86 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASP N N N N 41 ASP CA C N S 42 ASP C C N N 43 ASP O O N N 44 ASP CB C N N 45 ASP CG C N N 46 ASP OD1 O N N 47 ASP OD2 O N N 48 ASP OXT O N N 49 ASP H H N N 50 ASP H2 H N N 51 ASP HA H N N 52 ASP HB2 H N N 53 ASP HB3 H N N 54 ASP HD2 H N N 55 ASP HXT H N N 56 GLN N N N N 57 GLN CA C N S 58 GLN C C N N 59 GLN O O N N 60 GLN CB C N N 61 GLN CG C N N 62 GLN CD C N N 63 GLN OE1 O N N 64 GLN NE2 N N N 65 GLN OXT O N N 66 GLN H H N N 67 GLN H2 H N N 68 GLN HA H N N 69 GLN HB2 H N N 70 GLN HB3 H N N 71 GLN HG2 H N N 72 GLN HG3 H N N 73 GLN HE21 H N N 74 GLN HE22 H N N 75 GLN HXT H N N 76 GLU N N N N 77 GLU CA C N S 78 GLU C C N N 79 GLU O O N N 80 GLU CB C N N 81 GLU CG C N N 82 GLU CD C N N 83 GLU OE1 O N N 84 GLU OE2 O N N 85 GLU OXT O N N 86 GLU H H N N 87 GLU H2 H N N 88 GLU HA H N N 89 GLU HB2 H N N 90 GLU HB3 H N N 91 GLU HG2 H N N 92 GLU HG3 H N N 93 GLU HE2 H N N 94 GLU HXT H N N 95 GLY N N N N 96 GLY CA C N N 97 GLY C C N N 98 GLY O O N N 99 GLY OXT O N N 100 GLY H H N N 101 GLY H2 H N N 102 GLY HA2 H N N 103 GLY HA3 H N N 104 GLY HXT H N N 105 HOH O O N N 106 HOH H1 H N N 107 HOH H2 H N N 108 ILE N N N N 109 ILE CA C N S 110 ILE C C N N 111 ILE O O N N 112 ILE CB C N S 113 ILE CG1 C N N 114 ILE CG2 C N N 115 ILE CD1 C N N 116 ILE OXT O N N 117 ILE H H N N 118 ILE H2 H N N 119 ILE HA H N N 120 ILE HB H N N 121 ILE HG12 H N N 122 ILE HG13 H N N 123 ILE HG21 H N N 124 ILE HG22 H N N 125 ILE HG23 H N N 126 ILE HD11 H N N 127 ILE HD12 H N N 128 ILE HD13 H N N 129 ILE HXT H N N 130 LEU N N N N 131 LEU CA C N S 132 LEU C C N N 133 LEU O O N N 134 LEU CB C N N 135 LEU CG C N N 136 LEU CD1 C N N 137 LEU CD2 C N N 138 LEU OXT O N N 139 LEU H H N N 140 LEU H2 H N N 141 LEU HA H N N 142 LEU HB2 H N N 143 LEU HB3 H N N 144 LEU HG H N N 145 LEU HD11 H N N 146 LEU HD12 H N N 147 LEU HD13 H N N 148 LEU HD21 H N N 149 LEU HD22 H N N 150 LEU HD23 H N N 151 LEU HXT H N N 152 LYS N N N N 153 LYS CA C N S 154 LYS C C N N 155 LYS O O N N 156 LYS CB C N N 157 LYS CG C N N 158 LYS CD C N N 159 LYS CE C N N 160 LYS NZ N N N 161 LYS OXT O N N 162 LYS H H N N 163 LYS H2 H N N 164 LYS HA H N N 165 LYS HB2 H N N 166 LYS HB3 H N N 167 LYS HG2 H N N 168 LYS HG3 H N N 169 LYS HD2 H N N 170 LYS HD3 H N N 171 LYS HE2 H N N 172 LYS HE3 H N N 173 LYS HZ1 H N N 174 LYS HZ2 H N N 175 LYS HZ3 H N N 176 LYS HXT H N N 177 MET N N N N 178 MET CA C N S 179 MET C C N N 180 MET O O N N 181 MET CB C N N 182 MET CG C N N 183 MET SD S N N 184 MET CE C N N 185 MET OXT O N N 186 MET H H N N 187 MET H2 H N N 188 MET HA H N N 189 MET HB2 H N N 190 MET HB3 H N N 191 MET HG2 H N N 192 MET HG3 H N N 193 MET HE1 H N N 194 MET HE2 H N N 195 MET HE3 H N N 196 MET HXT H N N 197 MSE N N N N 198 MSE CA C N S 199 MSE C C N N 200 MSE O O N N 201 MSE OXT O N N 202 MSE CB C N N 203 MSE CG C N N 204 MSE SE SE N N 205 MSE CE C N N 206 MSE H H N N 207 MSE H2 H N N 208 MSE HA H N N 209 MSE HXT H N N 210 MSE HB2 H N N 211 MSE HB3 H N N 212 MSE HG2 H N N 213 MSE HG3 H N N 214 MSE HE1 H N N 215 MSE HE2 H N N 216 MSE HE3 H N N 217 PHE N N N N 218 PHE CA C N S 219 PHE C C N N 220 PHE O O N N 221 PHE CB C N N 222 PHE CG C Y N 223 PHE CD1 C Y N 224 PHE CD2 C Y N 225 PHE CE1 C Y N 226 PHE CE2 C Y N 227 PHE CZ C Y N 228 PHE OXT O N N 229 PHE H H N N 230 PHE H2 H N N 231 PHE HA H N N 232 PHE HB2 H N N 233 PHE HB3 H N N 234 PHE HD1 H N N 235 PHE HD2 H N N 236 PHE HE1 H N N 237 PHE HE2 H N N 238 PHE HZ H N N 239 PHE HXT H N N 240 PRO N N N N 241 PRO CA C N S 242 PRO C C N N 243 PRO O O N N 244 PRO CB C N N 245 PRO CG C N N 246 PRO CD C N N 247 PRO OXT O N N 248 PRO H H N N 249 PRO HA H N N 250 PRO HB2 H N N 251 PRO HB3 H N N 252 PRO HG2 H N N 253 PRO HG3 H N N 254 PRO HD2 H N N 255 PRO HD3 H N N 256 PRO HXT H N N 257 SER N N N N 258 SER CA C N S 259 SER C C N N 260 SER O O N N 261 SER CB C N N 262 SER OG O N N 263 SER OXT O N N 264 SER H H N N 265 SER H2 H N N 266 SER HA H N N 267 SER HB2 H N N 268 SER HB3 H N N 269 SER HG H N N 270 SER HXT H N N 271 THR N N N N 272 THR CA C N S 273 THR C C N N 274 THR O O N N 275 THR CB C N R 276 THR OG1 O N N 277 THR CG2 C N N 278 THR OXT O N N 279 THR H H N N 280 THR H2 H N N 281 THR HA H N N 282 THR HB H N N 283 THR HG1 H N N 284 THR HG21 H N N 285 THR HG22 H N N 286 THR HG23 H N N 287 THR HXT H N N 288 VAL N N N N 289 VAL CA C N S 290 VAL C C N N 291 VAL O O N N 292 VAL CB C N N 293 VAL CG1 C N N 294 VAL CG2 C N N 295 VAL OXT O N N 296 VAL H H N N 297 VAL H2 H N N 298 VAL HA H N N 299 VAL HB H N N 300 VAL HG11 H N N 301 VAL HG12 H N N 302 VAL HG13 H N N 303 VAL HG21 H N N 304 VAL HG22 H N N 305 VAL HG23 H N N 306 VAL HXT H N N 307 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASP N CA sing N N 39 ASP N H sing N N 40 ASP N H2 sing N N 41 ASP CA C sing N N 42 ASP CA CB sing N N 43 ASP CA HA sing N N 44 ASP C O doub N N 45 ASP C OXT sing N N 46 ASP CB CG sing N N 47 ASP CB HB2 sing N N 48 ASP CB HB3 sing N N 49 ASP CG OD1 doub N N 50 ASP CG OD2 sing N N 51 ASP OD2 HD2 sing N N 52 ASP OXT HXT sing N N 53 GLN N CA sing N N 54 GLN N H sing N N 55 GLN N H2 sing N N 56 GLN CA C sing N N 57 GLN CA CB sing N N 58 GLN CA HA sing N N 59 GLN C O doub N N 60 GLN C OXT sing N N 61 GLN CB CG sing N N 62 GLN CB HB2 sing N N 63 GLN CB HB3 sing N N 64 GLN CG CD sing N N 65 GLN CG HG2 sing N N 66 GLN CG HG3 sing N N 67 GLN CD OE1 doub N N 68 GLN CD NE2 sing N N 69 GLN NE2 HE21 sing N N 70 GLN NE2 HE22 sing N N 71 GLN OXT HXT sing N N 72 GLU N CA sing N N 73 GLU N H sing N N 74 GLU N H2 sing N N 75 GLU CA C sing N N 76 GLU CA CB sing N N 77 GLU CA HA sing N N 78 GLU C O doub N N 79 GLU C OXT sing N N 80 GLU CB CG sing N N 81 GLU CB HB2 sing N N 82 GLU CB HB3 sing N N 83 GLU CG CD sing N N 84 GLU CG HG2 sing N N 85 GLU CG HG3 sing N N 86 GLU CD OE1 doub N N 87 GLU CD OE2 sing N N 88 GLU OE2 HE2 sing N N 89 GLU OXT HXT sing N N 90 GLY N CA sing N N 91 GLY N H sing N N 92 GLY N H2 sing N N 93 GLY CA C sing N N 94 GLY CA HA2 sing N N 95 GLY CA HA3 sing N N 96 GLY C O doub N N 97 GLY C OXT sing N N 98 GLY OXT HXT sing N N 99 HOH O H1 sing N N 100 HOH O H2 sing N N 101 ILE N CA sing N N 102 ILE N H sing N N 103 ILE N H2 sing N N 104 ILE CA C sing N N 105 ILE CA CB sing N N 106 ILE CA HA sing N N 107 ILE C O doub N N 108 ILE C OXT sing N N 109 ILE CB CG1 sing N N 110 ILE CB CG2 sing N N 111 ILE CB HB sing N N 112 ILE CG1 CD1 sing N N 113 ILE CG1 HG12 sing N N 114 ILE CG1 HG13 sing N N 115 ILE CG2 HG21 sing N N 116 ILE CG2 HG22 sing N N 117 ILE CG2 HG23 sing N N 118 ILE CD1 HD11 sing N N 119 ILE CD1 HD12 sing N N 120 ILE CD1 HD13 sing N N 121 ILE OXT HXT sing N N 122 LEU N CA sing N N 123 LEU N H sing N N 124 LEU N H2 sing N N 125 LEU CA C sing N N 126 LEU CA CB sing N N 127 LEU CA HA sing N N 128 LEU C O doub N N 129 LEU C OXT sing N N 130 LEU CB CG sing N N 131 LEU CB HB2 sing N N 132 LEU CB HB3 sing N N 133 LEU CG CD1 sing N N 134 LEU CG CD2 sing N N 135 LEU CG HG sing N N 136 LEU CD1 HD11 sing N N 137 LEU CD1 HD12 sing N N 138 LEU CD1 HD13 sing N N 139 LEU CD2 HD21 sing N N 140 LEU CD2 HD22 sing N N 141 LEU CD2 HD23 sing N N 142 LEU OXT HXT sing N N 143 LYS N CA sing N N 144 LYS N H sing N N 145 LYS N H2 sing N N 146 LYS CA C sing N N 147 LYS CA CB sing N N 148 LYS CA HA sing N N 149 LYS C O doub N N 150 LYS C OXT sing N N 151 LYS CB CG sing N N 152 LYS CB HB2 sing N N 153 LYS CB HB3 sing N N 154 LYS CG CD sing N N 155 LYS CG HG2 sing N N 156 LYS CG HG3 sing N N 157 LYS CD CE sing N N 158 LYS CD HD2 sing N N 159 LYS CD HD3 sing N N 160 LYS CE NZ sing N N 161 LYS CE HE2 sing N N 162 LYS CE HE3 sing N N 163 LYS NZ HZ1 sing N N 164 LYS NZ HZ2 sing N N 165 LYS NZ HZ3 sing N N 166 LYS OXT HXT sing N N 167 MET N CA sing N N 168 MET N H sing N N 169 MET N H2 sing N N 170 MET CA C sing N N 171 MET CA CB sing N N 172 MET CA HA sing N N 173 MET C O doub N N 174 MET C OXT sing N N 175 MET CB CG sing N N 176 MET CB HB2 sing N N 177 MET CB HB3 sing N N 178 MET CG SD sing N N 179 MET CG HG2 sing N N 180 MET CG HG3 sing N N 181 MET SD CE sing N N 182 MET CE HE1 sing N N 183 MET CE HE2 sing N N 184 MET CE HE3 sing N N 185 MET OXT HXT sing N N 186 MSE N CA sing N N 187 MSE N H sing N N 188 MSE N H2 sing N N 189 MSE CA C sing N N 190 MSE CA CB sing N N 191 MSE CA HA sing N N 192 MSE C O doub N N 193 MSE C OXT sing N N 194 MSE OXT HXT sing N N 195 MSE CB CG sing N N 196 MSE CB HB2 sing N N 197 MSE CB HB3 sing N N 198 MSE CG SE sing N N 199 MSE CG HG2 sing N N 200 MSE CG HG3 sing N N 201 MSE SE CE sing N N 202 MSE CE HE1 sing N N 203 MSE CE HE2 sing N N 204 MSE CE HE3 sing N N 205 PHE N CA sing N N 206 PHE N H sing N N 207 PHE N H2 sing N N 208 PHE CA C sing N N 209 PHE CA CB sing N N 210 PHE CA HA sing N N 211 PHE C O doub N N 212 PHE C OXT sing N N 213 PHE CB CG sing N N 214 PHE CB HB2 sing N N 215 PHE CB HB3 sing N N 216 PHE CG CD1 doub Y N 217 PHE CG CD2 sing Y N 218 PHE CD1 CE1 sing Y N 219 PHE CD1 HD1 sing N N 220 PHE CD2 CE2 doub Y N 221 PHE CD2 HD2 sing N N 222 PHE CE1 CZ doub Y N 223 PHE CE1 HE1 sing N N 224 PHE CE2 CZ sing Y N 225 PHE CE2 HE2 sing N N 226 PHE CZ HZ sing N N 227 PHE OXT HXT sing N N 228 PRO N CA sing N N 229 PRO N CD sing N N 230 PRO N H sing N N 231 PRO CA C sing N N 232 PRO CA CB sing N N 233 PRO CA HA sing N N 234 PRO C O doub N N 235 PRO C OXT sing N N 236 PRO CB CG sing N N 237 PRO CB HB2 sing N N 238 PRO CB HB3 sing N N 239 PRO CG CD sing N N 240 PRO CG HG2 sing N N 241 PRO CG HG3 sing N N 242 PRO CD HD2 sing N N 243 PRO CD HD3 sing N N 244 PRO OXT HXT sing N N 245 SER N CA sing N N 246 SER N H sing N N 247 SER N H2 sing N N 248 SER CA C sing N N 249 SER CA CB sing N N 250 SER CA HA sing N N 251 SER C O doub N N 252 SER C OXT sing N N 253 SER CB OG sing N N 254 SER CB HB2 sing N N 255 SER CB HB3 sing N N 256 SER OG HG sing N N 257 SER OXT HXT sing N N 258 THR N CA sing N N 259 THR N H sing N N 260 THR N H2 sing N N 261 THR CA C sing N N 262 THR CA CB sing N N 263 THR CA HA sing N N 264 THR C O doub N N 265 THR C OXT sing N N 266 THR CB OG1 sing N N 267 THR CB CG2 sing N N 268 THR CB HB sing N N 269 THR OG1 HG1 sing N N 270 THR CG2 HG21 sing N N 271 THR CG2 HG22 sing N N 272 THR CG2 HG23 sing N N 273 THR OXT HXT sing N N 274 VAL N CA sing N N 275 VAL N H sing N N 276 VAL N H2 sing N N 277 VAL CA C sing N N 278 VAL CA CB sing N N 279 VAL CA HA sing N N 280 VAL C O doub N N 281 VAL C OXT sing N N 282 VAL CB CG1 sing N N 283 VAL CB CG2 sing N N 284 VAL CB HB sing N N 285 VAL CG1 HG11 sing N N 286 VAL CG1 HG12 sing N N 287 VAL CG1 HG13 sing N N 288 VAL CG2 HG21 sing N N 289 VAL CG2 HG22 sing N N 290 VAL CG2 HG23 sing N N 291 VAL OXT HXT sing N N 292 # _atom_sites.entry_id 2OFY _atom_sites.fract_transf_matrix[1][1] 0.023507 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.021705 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.012219 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O SE # loop_