HEADER OXIDOREDUCTASE, ELECTRON TRANSPORT 05-JAN-07 2OG6 TITLE CRYSTAL STRUCTURE OF ASPARAGINE OXYGENASE IN COMPLEX WITH FE(II) COMPND MOL_ID: 1; COMPND 2 MOLECULE: ASPARAGINE OXYGENASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: PUTATIVE OXYGENASE; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STREPTOMYCES COELICOLOR A3(2); SOURCE 3 ORGANISM_TAXID: 100226; SOURCE 4 STRAIN: DSMZ 40783; SOURCE 5 GENE: SCO3236 (ASNO); SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PQTEVMS01; SOURCE 11 OTHER_DETAILS: EXPRESSION PLASMID ENCODES FOR N-TERMINAL HIS-7-TAG SOURCE 12 FOR IMAC KEYWDS NONRIBOSOMAL PEPTIDE SYNTHESIS; NON-HEME IRON(II); ALPHA- KEYWDS 2 KETOGLUTARATE OXYGENASE; BETA-HYDROXYLATED AMINO ACID, KEYWDS 3 OXIDOREDUCTASE, ELECTRON TRANSPORT EXPDTA X-RAY DIFFRACTION AUTHOR L.-O.ESSEN,M.STRIEKER REVDAT 6 30-AUG-23 2OG6 1 REMARK SEQADV LINK REVDAT 5 18-OCT-17 2OG6 1 REMARK REVDAT 4 13-JUL-11 2OG6 1 VERSN REVDAT 3 24-FEB-09 2OG6 1 VERSN REVDAT 2 10-APR-07 2OG6 1 JRNL REVDAT 1 06-MAR-07 2OG6 0 JRNL AUTH M.STRIEKER,F.KOPP,C.MAHLERT,L.-O.ESSEN,M.A.MARAHIEL JRNL TITL MECHANISTIC AND STRUCTURAL BASIS OF STEREOSPECIFIC JRNL TITL 2 CBETA-HYDROXYLATION IN CALCIUM-DEPENDENT ANTIBIOTIC, A JRNL TITL 3 DAPTOMYCIN-TYPE LIPOPEPTIDE JRNL REF ACS CHEM.BIOL. V. 2 187 2007 JRNL REFN ISSN 1554-8929 JRNL PMID 17373765 JRNL DOI 10.1021/CB700012Y REMARK 2 REMARK 2 RESOLUTION. 1.92 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.92 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 3 NUMBER OF REFLECTIONS : 32988 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.170 REMARK 3 R VALUE (WORKING SET) : 0.169 REMARK 3 FREE R VALUE : 0.197 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 3.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1033 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.92 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.97 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2184 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 92.55 REMARK 3 BIN R VALUE (WORKING SET) : 0.2320 REMARK 3 BIN FREE R VALUE SET COUNT : 53 REMARK 3 BIN FREE R VALUE : 0.2520 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2477 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 3 REMARK 3 SOLVENT ATOMS : 241 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 30.60 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 34.05 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.35000 REMARK 3 B22 (A**2) : 0.35000 REMARK 3 B33 (A**2) : -0.52000 REMARK 3 B12 (A**2) : 0.17000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.118 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.111 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.076 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 5.701 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.965 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.953 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2538 ; 0.007 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 1738 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3473 ; 1.193 ; 1.969 REMARK 3 BOND ANGLES OTHERS (DEGREES): 4191 ; 0.897 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 324 ; 6.064 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 118 ;32.270 ;22.458 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 374 ;11.267 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 31 ;18.550 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 389 ; 0.064 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2894 ; 0.003 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 531 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 535 ; 0.207 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 1899 ; 0.200 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1239 ; 0.166 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 1326 ; 0.083 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 216 ; 0.155 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 18 ; 0.164 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 68 ; 0.310 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 25 ; 0.102 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2078 ; 0.811 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 643 ; 0.101 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2612 ; 0.887 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1034 ; 1.352 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 861 ; 2.084 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 10 A 332 REMARK 3 ORIGIN FOR THE GROUP (A): -5.3549 62.2181 -12.8026 REMARK 3 T TENSOR REMARK 3 T11: -0.0622 T22: -0.0572 REMARK 3 T33: -0.0995 T12: -0.0081 REMARK 3 T13: 0.0093 T23: 0.0124 REMARK 3 L TENSOR REMARK 3 L11: 0.5214 L22: 2.0236 REMARK 3 L33: 0.6459 L12: 0.1376 REMARK 3 L13: -0.0139 L23: -0.1943 REMARK 3 S TENSOR REMARK 3 S11: 0.0272 S12: -0.0304 S13: -0.0513 REMARK 3 S21: -0.0345 S22: -0.1008 S23: -0.0650 REMARK 3 S31: 0.0790 S32: 0.0282 S33: 0.0736 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 2OG6 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 15-JAN-07. REMARK 100 THE DEPOSITION ID IS D_1000041094. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : OTHER REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : NULL REMARK 200 DETECTOR MANUFACTURER : NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : CCP4 (SCALA) REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 33610 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.6 REMARK 200 DATA REDUNDANCY : 7.740 REMARK 200 R MERGE (I) : 0.07000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 38.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.93 REMARK 200 COMPLETENESS FOR SHELL (%) : 78.8 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.41600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 1DRY REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 55.06 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.74 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 2.5 M SODIUM ACETATE, 0.1 M HEPES, PH REMARK 280 4.6, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+2/3 REMARK 290 6555 -X,-X+Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 29.93033 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 59.86067 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 59.86067 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 29.93033 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -23 REMARK 465 LYS A -22 REMARK 465 HIS A -21 REMARK 465 HIS A -20 REMARK 465 HIS A -19 REMARK 465 HIS A -18 REMARK 465 HIS A -17 REMARK 465 HIS A -16 REMARK 465 HIS A -15 REMARK 465 SER A -14 REMARK 465 ASP A -13 REMARK 465 TYR A -12 REMARK 465 ASP A -11 REMARK 465 ILE A -10 REMARK 465 PRO A -9 REMARK 465 THR A -8 REMARK 465 THR A -7 REMARK 465 GLU A -6 REMARK 465 ASN A -5 REMARK 465 LEU A -4 REMARK 465 TYR A -3 REMARK 465 PHE A -2 REMARK 465 GLN A -1 REMARK 465 GLY A 0 REMARK 465 SER A 1 REMARK 465 ALA A 2 REMARK 465 ALA A 3 REMARK 465 ASN A 4 REMARK 465 ALA A 5 REMARK 465 ALA A 6 REMARK 465 GLY A 7 REMARK 465 PRO A 8 REMARK 465 ALA A 9 REMARK 465 ALA A 333 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 MET A 86 CG SD CE REMARK 480 GLU A 222 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 9011 O HOH A 9239 1.97 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO A 330 C - N - CA ANGL. DEV. = 14.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 39 -39.00 -37.78 REMARK 500 GLN A 217 143.82 -174.93 REMARK 500 SER A 219 171.75 130.20 REMARK 500 PRO A 221 99.97 -37.53 REMARK 500 ALA A 329 148.45 58.16 REMARK 500 PRO A 330 -105.11 1.10 REMARK 500 GLN A 331 -152.69 84.57 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 PRO A 330 GLN A 331 -145.43 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FE2 A5001 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 155 NE2 REMARK 620 2 GLU A 157 OE1 96.8 REMARK 620 3 HIS A 287 NE2 88.5 86.7 REMARK 620 4 HOH A9072 O 87.8 173.1 98.5 REMARK 620 5 HOH A9084 O 169.0 92.2 85.6 83.9 REMARK 620 6 HOH A9091 O 88.9 87.4 173.2 87.6 98.0 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FE2 A 5001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 7001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 9001 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2OG5 RELATED DB: PDB REMARK 900 APO FORM OF ASPARAGINE OXYGENASE REMARK 900 RELATED ID: 2OG7 RELATED DB: PDB REMARK 900 ASPARAGINE OXYGENASE WITH FE(II), 2S,3S-3-HYDROXYASPARAGINE AND REMARK 900 SUCCINATE DBREF 2OG6 A -23 333 UNP Q9Z4Z5 Q9Z4Z5_STRCO 1 333 SEQADV 2OG6 LYS A -22 UNP Q9Z4Z5 EXPRESSION TAG SEQADV 2OG6 HIS A -21 UNP Q9Z4Z5 EXPRESSION TAG SEQADV 2OG6 HIS A -20 UNP Q9Z4Z5 EXPRESSION TAG SEQADV 2OG6 HIS A -19 UNP Q9Z4Z5 EXPRESSION TAG SEQADV 2OG6 HIS A -18 UNP Q9Z4Z5 EXPRESSION TAG SEQADV 2OG6 HIS A -17 UNP Q9Z4Z5 EXPRESSION TAG SEQADV 2OG6 HIS A -16 UNP Q9Z4Z5 EXPRESSION TAG SEQADV 2OG6 HIS A -15 UNP Q9Z4Z5 EXPRESSION TAG SEQADV 2OG6 SER A -14 UNP Q9Z4Z5 CLONING ARTIFACT SEQADV 2OG6 ASP A -13 UNP Q9Z4Z5 CLONING ARTIFACT SEQADV 2OG6 TYR A -12 UNP Q9Z4Z5 CLONING ARTIFACT SEQADV 2OG6 ASP A -11 UNP Q9Z4Z5 CLONING ARTIFACT SEQADV 2OG6 ILE A -10 UNP Q9Z4Z5 CLONING ARTIFACT SEQADV 2OG6 PRO A -9 UNP Q9Z4Z5 CLONING ARTIFACT SEQADV 2OG6 THR A -8 UNP Q9Z4Z5 CLONING ARTIFACT SEQADV 2OG6 THR A -7 UNP Q9Z4Z5 CLONING ARTIFACT SEQADV 2OG6 GLU A -6 UNP Q9Z4Z5 CLONING ARTIFACT SEQADV 2OG6 ASN A -5 UNP Q9Z4Z5 CLONING ARTIFACT SEQADV 2OG6 LEU A -4 UNP Q9Z4Z5 CLONING ARTIFACT SEQADV 2OG6 TYR A -3 UNP Q9Z4Z5 CLONING ARTIFACT SEQADV 2OG6 PHE A -2 UNP Q9Z4Z5 CLONING ARTIFACT SEQADV 2OG6 GLN A -1 UNP Q9Z4Z5 CLONING ARTIFACT SEQADV 2OG6 GLY A 0 UNP Q9Z4Z5 CLONING ARTIFACT SEQADV 2OG6 SER A 1 UNP Q9Z4Z5 CLONING ARTIFACT SEQRES 1 A 357 MET LYS HIS HIS HIS HIS HIS HIS HIS SER ASP TYR ASP SEQRES 2 A 357 ILE PRO THR THR GLU ASN LEU TYR PHE GLN GLY SER ALA SEQRES 3 A 357 ALA ASN ALA ALA GLY PRO ALA SER ARG TYR ASP VAL THR SEQRES 4 A 357 LEU ASP GLN SER ASP ALA GLU LEU VAL GLU GLU ILE ALA SEQRES 5 A 357 TRP LYS LEU ALA THR GLN ALA THR GLY ARG PRO ASP ASP SEQRES 6 A 357 ALA GLU TRP VAL GLU ALA ALA ARG ASN ALA TRP HIS ALA SEQRES 7 A 357 TRP PRO ALA THR LEU ARG ARG ASP LEU ALA GLY PHE ARG SEQRES 8 A 357 ARG ASP SER GLY PRO ASP GLY ALA ILE VAL LEU ARG GLY SEQRES 9 A 357 LEU PRO VAL ASP SER MET GLY LEU PRO PRO THR PRO ARG SEQRES 10 A 357 VAL ASN GLY SER VAL GLN ARG GLU ALA SER LEU GLY ALA SEQRES 11 A 357 ALA VAL LEU LEU MET THR ALA CYS GLY LEU GLY ASP PRO SEQRES 12 A 357 GLY ALA PHE LEU PRO GLU LYS ASN GLY ALA LEU VAL GLN SEQRES 13 A 357 ASP VAL VAL PRO VAL PRO GLY MET GLU GLU PHE GLN GLY SEQRES 14 A 357 ASN ALA GLY SER THR LEU LEU THR PHE HIS ASN GLU ASN SEQRES 15 A 357 ALA PHE HIS GLU HIS ARG PRO ASP PHE VAL MET LEU LEU SEQRES 16 A 357 CYS LEU ARG ALA ASP PRO THR GLY ARG ALA GLY LEU ARG SEQRES 17 A 357 THR ALA CYS VAL ARG ARG VAL LEU PRO LEU LEU SER ASP SEQRES 18 A 357 SER THR VAL ASP ALA LEU TRP ALA PRO GLU PHE ARG THR SEQRES 19 A 357 ALA PRO PRO PRO SER PHE GLN LEU SER GLY PRO GLU GLU SEQRES 20 A 357 ALA PRO ALA PRO VAL LEU LEU GLY ASP ARG SER ASP PRO SEQRES 21 A 357 ASP LEU ARG VAL ASP LEU ALA ALA THR GLU PRO VAL THR SEQRES 22 A 357 GLU ARG ALA ALA GLU ALA LEU ARG GLU LEU GLN ALA HIS SEQRES 23 A 357 PHE ASP ALA THR ALA VAL THR HIS ARG LEU LEU PRO GLY SEQRES 24 A 357 GLU LEU ALA ILE VAL ASP ASN ARG VAL THR VAL HIS GLY SEQRES 25 A 357 ARG THR GLU PHE THR PRO ARG TYR ASP GLY THR ASP ARG SEQRES 26 A 357 TRP LEU GLN ARG THR PHE VAL LEU THR ASP LEU ARG ARG SEQRES 27 A 357 SER ARG ALA MET ARG PRO ALA ASP GLY TYR VAL LEU GLY SEQRES 28 A 357 ALA ALA PRO GLN PRO ALA HET FE2 A5001 1 HET CL A7001 1 HET CL A9001 1 HETNAM FE2 FE (II) ION HETNAM CL CHLORIDE ION FORMUL 2 FE2 FE 2+ FORMUL 3 CL 2(CL 1-) FORMUL 5 HOH *241(H2 O) HELIX 1 1 ASP A 17 ALA A 35 1 19 HELIX 2 2 ASP A 41 HIS A 53 1 13 HELIX 3 3 PRO A 56 ASP A 69 1 14 HELIX 4 4 SER A 103 GLY A 117 1 15 HELIX 5 5 GLU A 125 ALA A 129 5 5 HELIX 6 6 VAL A 188 LEU A 192 1 5 HELIX 7 7 PRO A 193 LEU A 195 5 3 HELIX 8 8 SER A 196 ALA A 205 1 10 HELIX 9 9 PRO A 213 GLN A 217 5 5 HELIX 10 10 THR A 249 ALA A 267 1 19 HELIX 11 11 ASP A 311 GLY A 323 5 13 SHEET 1 A 6 ASP A 13 THR A 15 0 SHEET 2 A 6 ALA A 75 ARG A 79 1 O VAL A 77 N VAL A 14 SHEET 3 A 6 GLU A 276 ASP A 281 -1 O LEU A 277 N LEU A 78 SHEET 4 A 6 PHE A 167 ARG A 174 -1 N VAL A 168 O VAL A 280 SHEET 5 A 6 TRP A 302 LEU A 309 -1 O GLN A 304 N LEU A 171 SHEET 6 A 6 GLN A 132 VAL A 134 -1 N VAL A 134 O LEU A 303 SHEET 1 B 7 ASP A 13 THR A 15 0 SHEET 2 B 7 ALA A 75 ARG A 79 1 O VAL A 77 N VAL A 14 SHEET 3 B 7 GLU A 276 ASP A 281 -1 O LEU A 277 N LEU A 78 SHEET 4 B 7 PHE A 167 ARG A 174 -1 N VAL A 168 O VAL A 280 SHEET 5 B 7 TRP A 302 LEU A 309 -1 O GLN A 304 N LEU A 171 SHEET 6 B 7 ASP A 118 PHE A 122 -1 N ASP A 118 O LEU A 309 SHEET 7 B 7 VAL A 325 LEU A 326 1 O LEU A 326 N ALA A 121 SHEET 1 C 4 LEU A 152 HIS A 155 0 SHEET 2 C 4 THR A 285 ARG A 289 -1 O HIS A 287 N HIS A 155 SHEET 3 C 4 LEU A 183 CYS A 187 -1 N ALA A 186 O VAL A 286 SHEET 4 C 4 VAL A 268 HIS A 270 -1 O HIS A 270 N LEU A 183 SHEET 1 D 2 PHE A 208 ARG A 209 0 SHEET 2 D 2 GLU A 246 PRO A 247 -1 O GLU A 246 N ARG A 209 SHEET 1 E 2 LEU A 229 GLY A 231 0 SHEET 2 E 2 PRO A 236 LEU A 238 -1 O ASP A 237 N LEU A 230 LINK NE2 HIS A 155 FE FE2 A5001 1555 1555 2.38 LINK OE1 GLU A 157 FE FE2 A5001 1555 1555 2.08 LINK NE2 HIS A 287 FE FE2 A5001 1555 1555 2.07 LINK FE FE2 A5001 O HOH A9072 1555 1555 2.18 LINK FE FE2 A5001 O HOH A9084 1555 1555 2.55 LINK FE FE2 A5001 O HOH A9091 1555 1555 2.19 CISPEP 1 ALA A 329 PRO A 330 0 18.95 SITE 1 AC1 6 HIS A 155 GLU A 157 HIS A 287 HOH A9072 SITE 2 AC1 6 HOH A9084 HOH A9091 SITE 1 AC2 3 HIS A 270 LEU A 272 ARG A 301 SITE 1 AC3 4 ARG A 67 GLY A 115 LEU A 116 HOH A9077 CRYST1 90.733 90.733 89.791 90.00 90.00 120.00 P 31 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011021 0.006363 0.000000 0.00000 SCALE2 0.000000 0.012726 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011137 0.00000