HEADER HYDROLASE 05-JAN-07 2OGI TITLE CRYSTAL STRUCTURE OF A PUTATIVE METAL DEPENDENT PHOSPHOHYDROLASE TITLE 2 (SAG1661) FROM STREPTOCOCCUS AGALACTIAE SEROGROUP V AT 1.85 A TITLE 3 RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: HYPOTHETICAL PROTEIN SAG1661; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: CONSERVED HYPOTHETICAL PROTEIN TIGR00488; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STREPTOCOCCUS AGALACTIAE SEROGROUP V; SOURCE 3 ORGANISM_TAXID: 216466; SOURCE 4 STRAIN: 2603 V/R; SOURCE 5 ATCC: BAA-611; SOURCE 6 GENE: NP_688652.1, SAG1661; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: SPEEDET KEYWDS STRUCTURAL GENOMICS, JOINT CENTER FOR STRUCTURAL GENOMICS, JCSG, KEYWDS 2 PROTEIN STRUCTURE INITIATIVE, PSI-2, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) REVDAT 6 25-JAN-23 2OGI 1 REMARK SEQADV LINK REVDAT 5 18-OCT-17 2OGI 1 REMARK REVDAT 4 13-JUL-11 2OGI 1 VERSN REVDAT 3 23-MAR-11 2OGI 1 HEADER TITLE KEYWDS REVDAT 2 24-FEB-09 2OGI 1 VERSN REVDAT 1 16-JAN-07 2OGI 0 JRNL AUTH JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) JRNL TITL CRYSTAL STRUCTURE OF CONSERVED HYPOTHETICAL PROTEIN JRNL TITL 2 TIGR00488 (NP_688652.1) FROM STREPTOCOCCUS AGALACTIAE 2603 JRNL TITL 3 AT 1.85 A RESOLUTION JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.85 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0005 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD WITH PHASES REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.85 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 40.55 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 37389 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.174 REMARK 3 R VALUE (WORKING SET) : 0.172 REMARK 3 FREE R VALUE : 0.229 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1865 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.85 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.90 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2588 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.69 REMARK 3 BIN R VALUE (WORKING SET) : 0.2660 REMARK 3 BIN FREE R VALUE SET COUNT : 132 REMARK 3 BIN FREE R VALUE : 0.3010 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3089 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 75 REMARK 3 SOLVENT ATOMS : 272 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 32.44 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 28.84 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.60000 REMARK 3 B22 (A**2) : -0.27000 REMARK 3 B33 (A**2) : -2.32000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -1.20000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.130 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.135 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.108 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 6.677 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.968 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.935 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3269 ; 0.018 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 2937 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4449 ; 1.653 ; 1.989 REMARK 3 BOND ANGLES OTHERS (DEGREES): 6823 ; 0.900 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 394 ; 5.734 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 151 ;34.084 ;24.172 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 556 ;15.105 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 18 ;19.576 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 489 ; 0.094 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3598 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 660 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 805 ; 0.222 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 2981 ; 0.178 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1635 ; 0.191 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 1858 ; 0.087 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 228 ; 0.191 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): 2 ; 0.049 ; 0.200 REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 12 ; 0.125 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 53 ; 0.227 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 20 ; 0.183 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2000 ; 2.051 ; 3.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 793 ; 0.632 ; 3.000 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3134 ; 3.026 ; 5.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1476 ; 5.180 ; 8.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1313 ; 7.054 ;11.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : 1 REMARK 3 REMARK 3 NCS GROUP NUMBER : 1 REMARK 3 CHAIN NAMES : A B REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 10 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 3 A 20 5 REMARK 3 1 B 3 B 20 5 REMARK 3 2 A 21 A 64 2 REMARK 3 2 B 21 B 64 2 REMARK 3 3 A 65 A 86 5 REMARK 3 3 B 65 B 86 5 REMARK 3 4 A 87 A 120 2 REMARK 3 4 B 87 B 120 2 REMARK 3 5 A 121 A 126 4 REMARK 3 5 B 121 B 126 4 REMARK 3 6 A 127 A 140 2 REMARK 3 6 B 127 B 140 2 REMARK 3 7 A 141 A 148 5 REMARK 3 7 B 141 B 148 5 REMARK 3 8 A 149 A 173 2 REMARK 3 8 B 149 B 173 2 REMARK 3 9 A 174 A 177 5 REMARK 3 9 B 174 B 177 5 REMARK 3 10 A 178 A 193 2 REMARK 3 10 B 178 B 193 2 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 TIGHT POSITIONAL 1 A (A): 779 ; 0.06 ; 0.05 REMARK 3 MEDIUM POSITIONAL 1 A (A): 1567 ; 0.32 ; 0.50 REMARK 3 LOOSE POSITIONAL 1 A (A): 497 ; 0.87 ; 5.00 REMARK 3 TIGHT THERMAL 1 A (A**2): 779 ; 0.35 ; 0.50 REMARK 3 MEDIUM THERMAL 1 A (A**2): 1567 ; 1.38 ; 2.00 REMARK 3 LOOSE THERMAL 1 A (A**2): 497 ; 3.71 ; 10.00 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 3 A 194 REMARK 3 ORIGIN FOR THE GROUP (A): -2.9525 15.4622 30.8096 REMARK 3 T TENSOR REMARK 3 T11: -0.1026 T22: -0.0056 REMARK 3 T33: -0.0464 T12: -0.0847 REMARK 3 T13: 0.0003 T23: 0.0058 REMARK 3 L TENSOR REMARK 3 L11: 1.5576 L22: 1.1212 REMARK 3 L33: 3.5290 L12: 0.0958 REMARK 3 L13: -0.2694 L23: 0.1764 REMARK 3 S TENSOR REMARK 3 S11: -0.0918 S12: 0.2876 S13: 0.0125 REMARK 3 S21: -0.0405 S22: 0.0748 S23: -0.0509 REMARK 3 S31: 0.3289 S32: -0.2702 S33: 0.0170 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 1 B 194 REMARK 3 ORIGIN FOR THE GROUP (A): -9.0142 28.1477 67.4550 REMARK 3 T TENSOR REMARK 3 T11: -0.0931 T22: -0.0581 REMARK 3 T33: -0.0420 T12: -0.0107 REMARK 3 T13: -0.0033 T23: 0.0212 REMARK 3 L TENSOR REMARK 3 L11: 1.3714 L22: 1.3548 REMARK 3 L33: 2.1476 L12: 0.1499 REMARK 3 L13: 0.3424 L23: 0.3721 REMARK 3 S TENSOR REMARK 3 S11: 0.0377 S12: -0.1629 S13: 0.0077 REMARK 3 S21: 0.0697 S22: -0.0071 S23: 0.1205 REMARK 3 S31: 0.0189 S32: -0.4038 S33: -0.0306 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: 1. HYDROGENS HAVE BEEN ADDED IN THE REMARK 3 RIDING POSITIONS. 2. ATOM RECORD CONTAINS RESIDUAL B FACTORS REMARK 3 ONLY. 3. A MET-INHIBITION PROTOCOL WAS USED FOR SELENOMETHIONINE REMARK 3 INCORPORATION DURING PROTEIN EXPRESSION. THE OCCUPANCY OF THE SE REMARK 3 ATOMS IN THE MSE RESIDUES WAS REDUCED TO 0.75 FOR THE REDUCED REMARK 3 SCATTERING POWER DUE TO PARTIAL S-MET INCORPORATION. 4. EACH REMARK 3 MONOMER CONTAINS TWO METALS WHICH ARE ASSIGNED AS FE. THE REMARK 3 ASSIGNMENT OF FE IONS IS SUPPORTED BY BOTH X-RAY FLUORESCENCE REMARK 3 EXCITATION SCAN AND ANOMALOUS DIFFERENCE FOURIER MAPS. 5. A REMARK 3 GUANOSINE 5'-DIPHOSPHATE (GDP) MOLECULE WAS MODELED IN CHAINS A REMARK 3 AND B NEAR THE DI-IRON SITE. THE ASSIGNMENT IS BASED ON THE REMARK 3 DENSITY, PFAM ANNOTATION AND SIMILAR STRUCTURES. 6. SOME BLOBS REMARK 3 OF ELECTRON DENSITY OUTSIDE PROTEIN REGION ARE NOT MODELED. REMARK 4 REMARK 4 2OGI COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 09-JAN-07. REMARK 100 THE DEPOSITION ID IS D_1000041106. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 17-DEC-06 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 6.00 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL11-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.91837, 0.97935, 0.97864 REMARK 200 MONOCHROMATOR : SINGLE CRYSTAL SI(111) BENT REMARK 200 (HORIZONTAL FOCUSING) REMARK 200 OPTICS : FLAT MIRROR (VERTICAL FOCUSING) REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 325 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 37403 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.850 REMARK 200 RESOLUTION RANGE LOW (A) : 40.555 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.07300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.1300 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.85 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.92 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.9 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.65800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SHELX, SHELXD, AUTOSHARP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.63 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.44 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NANODROP, 1.0M LICL, 20.0% PEG-6000, REMARK 280 0.1M MES PH 6.0, VAPOR DIFFUSION,SITTING DROP, TEMPERATURE 277K, REMARK 280 VAPOR DIFFUSION, SITTING DROP, PH 6.00 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 26.26750 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 THIS ENTRY CONTAINS THE CRYSTALLOGRAPHIC ASYMMETRIC UNIT REMARK 300 WHICH CONSISTS OF 2 CHAIN(S). SEE REMARK 350 FOR REMARK 300 INFORMATION ON GENERATING THE BIOLOGICAL MOLECULE(S). REMARK 300 STATIC LIGHT SCATTERING WITH ANALYTICAL SIZE EXCLUSION REMARK 300 CHROMATOGRAPHY MEASUREMENTS INDICATE THAT THE DIMER REMARK 300 IS A BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE REMARK 300 IN SOLUTION. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3840 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 17110 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -119.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 0 REMARK 465 MSE A 1 REMARK 465 THR A 2 REMARK 465 GLY B 0 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASP A 10 OD1 OD2 REMARK 470 LYS A 25 CD CE NZ REMARK 470 ARG A 35 CZ NH1 NH2 REMARK 470 GLU A 42 OE1 OE2 REMARK 470 GLU A 49 CD OE1 OE2 REMARK 470 GLU A 68 CG CD OE1 OE2 REMARK 470 LYS A 106 CG CD CE NZ REMARK 470 GLN A 108 OE1 NE2 REMARK 470 LYS A 175 CE NZ REMARK 470 LYS B 4 CG CD CE NZ REMARK 470 LYS B 17 CD CE NZ REMARK 470 LYS B 106 CD CE NZ REMARK 470 GLN B 108 OE1 NE2 REMARK 470 GLN B 123 OE1 NE2 REMARK 470 ASP B 195 CA C O CB CG OD1 OD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O3' GDP A 400 O HOH A 515 2.09 REMARK 500 O HOH B 431 O HOH B 466 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN A 77 72.35 -156.62 REMARK 500 TRP A 85 -144.16 -100.37 REMARK 500 ALA A 104 31.27 -84.71 REMARK 500 ALA A 104 31.07 -84.71 REMARK 500 GLN A 123 73.00 32.02 REMARK 500 GLN A 123 72.92 -153.41 REMARK 500 GLN B 77 64.37 -153.89 REMARK 500 TRP B 85 -148.38 -94.82 REMARK 500 ALA B 104 40.89 -90.03 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FE A 301 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 29 NE2 REMARK 620 2 HIS A 58 NE2 99.8 REMARK 620 3 ASP A 59 OD2 95.8 86.5 REMARK 620 4 ASP A 135 OD1 81.1 86.4 171.6 REMARK 620 5 GDP A 400 O3B 84.6 175.3 91.6 95.8 REMARK 620 6 HOH A 406 O 162.2 94.1 96.0 88.9 81.8 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FE A 302 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 59 OD1 REMARK 620 2 HIS A 91 NE2 89.6 REMARK 620 3 HIS A 117 NE2 87.4 88.6 REMARK 620 4 GDP A 400 O1A 175.7 87.8 89.1 REMARK 620 5 GDP A 400 O2B 99.0 95.2 172.6 84.7 REMARK 620 6 HOH A 406 O 92.8 175.7 87.9 89.6 88.0 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FE B 301 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 29 NE2 REMARK 620 2 HIS B 58 NE2 99.9 REMARK 620 3 ASP B 59 OD2 101.5 79.0 REMARK 620 4 ASP B 135 OD1 80.5 92.3 171.2 REMARK 620 5 GDP B 400 O3B 85.8 172.8 95.7 92.9 REMARK 620 6 HOH B 413 O 159.0 97.3 93.4 87.1 78.0 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FE B 302 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 59 OD1 REMARK 620 2 HIS B 91 NE2 82.4 REMARK 620 3 HIS B 117 NE2 91.4 90.0 REMARK 620 4 GDP B 400 O1A 174.2 91.9 89.1 REMARK 620 5 GDP B 400 O2B 97.7 92.9 170.7 82.0 REMARK 620 6 HOH B 413 O 94.9 175.1 94.1 90.8 83.4 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FE A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FE A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FE B 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FE B 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 305 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GDP A 400 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GDP B 400 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MES B 401 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 370306 RELATED DB: TARGETDB REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE CONSTRUCT WAS EXPRESSED WITH A PURIFICATION TAG REMARK 999 MGSDKIHHHHHHENLYFQG. THE TAG WAS REMOVED WITH TEV REMARK 999 PROTEASE LEAVING ONLY A GLYCINE, FOLLOWED BY THE REMARK 999 TARGET SEQUENCE. DBREF 2OGI A 1 195 UNP Q8DY32 Q8DY32_STRA5 1 195 DBREF 2OGI B 1 195 UNP Q8DY32 Q8DY32_STRA5 1 195 SEQADV 2OGI GLY A 0 UNP Q8DY32 EXPRESSION TAG SEQADV 2OGI MSE A 1 UNP Q8DY32 MET 1 MODIFIED RESIDUE SEQADV 2OGI MSE A 21 UNP Q8DY32 MET 21 MODIFIED RESIDUE SEQADV 2OGI MSE A 22 UNP Q8DY32 MET 22 MODIFIED RESIDUE SEQADV 2OGI MSE A 124 UNP Q8DY32 MET 124 MODIFIED RESIDUE SEQADV 2OGI GLY B 0 UNP Q8DY32 EXPRESSION TAG SEQADV 2OGI MSE B 1 UNP Q8DY32 MET 1 MODIFIED RESIDUE SEQADV 2OGI MSE B 21 UNP Q8DY32 MET 21 MODIFIED RESIDUE SEQADV 2OGI MSE B 22 UNP Q8DY32 MET 22 MODIFIED RESIDUE SEQADV 2OGI MSE B 124 UNP Q8DY32 MET 124 MODIFIED RESIDUE SEQRES 1 A 196 GLY MSE THR TYR LYS ASP TYR THR GLY LEU ASP ARG THR SEQRES 2 A 196 GLU LEU LEU SER LYS VAL ARG HIS MSE MSE SER ASP LYS SEQRES 3 A 196 ARG PHE ASN HIS VAL LEU GLY VAL GLU ARG ALA ALA ILE SEQRES 4 A 196 GLU LEU ALA GLU ARG TYR GLY TYR ASP LYS GLU LYS ALA SEQRES 5 A 196 GLY LEU ALA ALA LEU LEU HIS ASP TYR ALA LYS GLU LEU SEQRES 6 A 196 SER ASP ASP GLU PHE LEU ARG LEU ILE ASP LYS TYR GLN SEQRES 7 A 196 PRO ASP PRO ASP LEU LYS LYS TRP GLY ASN ASN ILE TRP SEQRES 8 A 196 HIS GLY LEU VAL GLY ILE TYR LYS ILE GLN GLU ASP LEU SEQRES 9 A 196 ALA ILE LYS ASP GLN ASP ILE LEU ALA ALA ILE ALA LYS SEQRES 10 A 196 HIS THR VAL GLY SER ALA GLN MSE SER THR LEU ASP LYS SEQRES 11 A 196 ILE VAL TYR VAL ALA ASP TYR ILE GLU HIS ASN ARG ASP SEQRES 12 A 196 PHE PRO GLY VAL GLU GLU ALA ARG GLU LEU ALA LYS VAL SEQRES 13 A 196 ASP LEU ASN LYS ALA VAL ALA TYR GLU THR ALA ARG THR SEQRES 14 A 196 VAL ALA PHE LEU ALA SER LYS ALA GLN PRO ILE TYR PRO SEQRES 15 A 196 LYS THR ILE GLU THR TYR ASN ALA TYR ILE PRO TYR LEU SEQRES 16 A 196 ASP SEQRES 1 B 196 GLY MSE THR TYR LYS ASP TYR THR GLY LEU ASP ARG THR SEQRES 2 B 196 GLU LEU LEU SER LYS VAL ARG HIS MSE MSE SER ASP LYS SEQRES 3 B 196 ARG PHE ASN HIS VAL LEU GLY VAL GLU ARG ALA ALA ILE SEQRES 4 B 196 GLU LEU ALA GLU ARG TYR GLY TYR ASP LYS GLU LYS ALA SEQRES 5 B 196 GLY LEU ALA ALA LEU LEU HIS ASP TYR ALA LYS GLU LEU SEQRES 6 B 196 SER ASP ASP GLU PHE LEU ARG LEU ILE ASP LYS TYR GLN SEQRES 7 B 196 PRO ASP PRO ASP LEU LYS LYS TRP GLY ASN ASN ILE TRP SEQRES 8 B 196 HIS GLY LEU VAL GLY ILE TYR LYS ILE GLN GLU ASP LEU SEQRES 9 B 196 ALA ILE LYS ASP GLN ASP ILE LEU ALA ALA ILE ALA LYS SEQRES 10 B 196 HIS THR VAL GLY SER ALA GLN MSE SER THR LEU ASP LYS SEQRES 11 B 196 ILE VAL TYR VAL ALA ASP TYR ILE GLU HIS ASN ARG ASP SEQRES 12 B 196 PHE PRO GLY VAL GLU GLU ALA ARG GLU LEU ALA LYS VAL SEQRES 13 B 196 ASP LEU ASN LYS ALA VAL ALA TYR GLU THR ALA ARG THR SEQRES 14 B 196 VAL ALA PHE LEU ALA SER LYS ALA GLN PRO ILE TYR PRO SEQRES 15 B 196 LYS THR ILE GLU THR TYR ASN ALA TYR ILE PRO TYR LEU SEQRES 16 B 196 ASP MODRES 2OGI MSE A 21 MET SELENOMETHIONINE MODRES 2OGI MSE A 22 MET SELENOMETHIONINE MODRES 2OGI MSE A 124 MET SELENOMETHIONINE MODRES 2OGI MSE B 1 MET SELENOMETHIONINE MODRES 2OGI MSE B 21 MET SELENOMETHIONINE MODRES 2OGI MSE B 22 MET SELENOMETHIONINE MODRES 2OGI MSE B 124 MET SELENOMETHIONINE HET MSE A 21 8 HET MSE A 22 8 HET MSE A 124 8 HET MSE B 1 8 HET MSE B 21 8 HET MSE B 22 8 HET MSE B 124 8 HET FE A 301 1 HET FE A 302 1 HET CL A 303 1 HET CL A 304 1 HET CL A 305 1 HET GDP A 400 28 HET FE B 301 1 HET FE B 302 1 HET GDP B 400 28 HET MES B 401 12 HETNAM MSE SELENOMETHIONINE HETNAM FE FE (III) ION HETNAM CL CHLORIDE ION HETNAM GDP GUANOSINE-5'-DIPHOSPHATE HETNAM MES 2-(N-MORPHOLINO)-ETHANESULFONIC ACID FORMUL 1 MSE 7(C5 H11 N O2 SE) FORMUL 3 FE 4(FE 3+) FORMUL 5 CL 3(CL 1-) FORMUL 8 GDP 2(C10 H15 N5 O11 P2) FORMUL 12 MES C6 H13 N O4 S FORMUL 13 HOH *272(H2 O) HELIX 1 1 TYR A 3 GLY A 8 1 6 HELIX 2 2 ASP A 10 HIS A 20 1 11 HELIX 3 3 SER A 23 GLY A 45 1 23 HELIX 4 4 ASP A 47 HIS A 58 1 12 HELIX 5 5 SER A 65 GLN A 77 1 13 HELIX 6 6 PRO A 80 TRP A 85 5 6 HELIX 7 7 GLY A 86 VAL A 94 1 9 HELIX 8 8 VAL A 94 LEU A 103 1 10 HELIX 9 9 ASP A 107 LYS A 116 1 10 HELIX 10 10 SER A 125 GLU A 138 1 14 HELIX 11 11 GLY A 145 LYS A 154 1 10 HELIX 12 12 ASP A 156 LYS A 175 1 20 HELIX 13 13 TYR A 180 ILE A 191 1 12 HELIX 14 14 PRO A 192 ASP A 195 5 4 HELIX 15 15 THR B 2 GLY B 8 1 7 HELIX 16 16 ASP B 10 MSE B 21 1 12 HELIX 17 17 SER B 23 TYR B 44 1 22 HELIX 18 18 ASP B 47 HIS B 58 1 12 HELIX 19 19 SER B 65 GLN B 77 1 13 HELIX 20 20 ASP B 81 TRP B 85 5 5 HELIX 21 21 GLY B 86 VAL B 94 1 9 HELIX 22 22 VAL B 94 LEU B 103 1 10 HELIX 23 23 ASP B 107 LYS B 116 1 10 HELIX 24 24 SER B 125 GLU B 138 1 14 HELIX 25 25 GLY B 145 LYS B 154 1 10 HELIX 26 26 ASP B 156 LYS B 175 1 20 HELIX 27 27 TYR B 180 ILE B 191 1 12 HELIX 28 28 PRO B 192 LEU B 194 5 3 LINK C HIS A 20 N MSE A 21 1555 1555 1.32 LINK C MSE A 21 N MSE A 22 1555 1555 1.34 LINK C MSE A 22 N SER A 23 1555 1555 1.34 LINK C AGLN A 123 N MSE A 124 1555 1555 1.33 LINK C BGLN A 123 N MSE A 124 1555 1555 1.33 LINK C MSE A 124 N SER A 125 1555 1555 1.33 LINK C MSE B 1 N THR B 2 1555 1555 1.34 LINK C HIS B 20 N MSE B 21 1555 1555 1.33 LINK C MSE B 21 N MSE B 22 1555 1555 1.33 LINK C MSE B 22 N SER B 23 1555 1555 1.32 LINK C GLN B 123 N MSE B 124 1555 1555 1.32 LINK C MSE B 124 N SER B 125 1555 1555 1.33 LINK NE2 HIS A 29 FE FE A 301 1555 1555 2.23 LINK NE2 HIS A 58 FE FE A 301 1555 1555 2.29 LINK OD2 ASP A 59 FE FE A 301 1555 1555 2.18 LINK OD1 ASP A 59 FE FE A 302 1555 1555 2.17 LINK NE2 HIS A 91 FE FE A 302 1555 1555 2.24 LINK NE2 HIS A 117 FE FE A 302 1555 1555 2.16 LINK OD1 ASP A 135 FE FE A 301 1555 1555 2.16 LINK FE FE A 301 O3B GDP A 400 1555 1555 2.25 LINK FE FE A 301 O HOH A 406 1555 1555 1.96 LINK FE FE A 302 O1A GDP A 400 1555 1555 2.28 LINK FE FE A 302 O2B GDP A 400 1555 1555 2.20 LINK FE FE A 302 O HOH A 406 1555 1555 2.03 LINK NE2 HIS B 29 FE FE B 301 1555 1555 2.22 LINK NE2 HIS B 58 FE FE B 301 1555 1555 2.29 LINK OD2 ASP B 59 FE FE B 301 1555 1555 2.16 LINK OD1 ASP B 59 FE FE B 302 1555 1555 2.17 LINK NE2 HIS B 91 FE FE B 302 1555 1555 2.17 LINK NE2 HIS B 117 FE FE B 302 1555 1555 2.27 LINK OD1 ASP B 135 FE FE B 301 1555 1555 2.22 LINK FE FE B 301 O3B GDP B 400 1555 1555 2.33 LINK FE FE B 301 O HOH B 413 1555 1555 1.89 LINK FE FE B 302 O1A GDP B 400 1555 1555 2.12 LINK FE FE B 302 O2B GDP B 400 1555 1555 2.18 LINK FE FE B 302 O HOH B 413 1555 1555 2.13 SITE 1 AC1 7 HIS A 29 HIS A 58 ASP A 59 ASP A 135 SITE 2 AC1 7 FE A 302 GDP A 400 HOH A 406 SITE 1 AC2 6 ASP A 59 HIS A 91 HIS A 117 FE A 301 SITE 2 AC2 6 GDP A 400 HOH A 406 SITE 1 AC3 7 HIS B 29 HIS B 58 ASP B 59 ASP B 135 SITE 2 AC3 7 FE B 302 GDP B 400 HOH B 413 SITE 1 AC4 6 ASP B 59 HIS B 91 HIS B 117 FE B 301 SITE 2 AC4 6 GDP B 400 HOH B 413 SITE 1 AC5 3 GLY A 145 VAL A 146 GLU A 147 SITE 1 AC6 3 ARG A 35 HIS A 139 HOH A 445 SITE 1 AC7 22 HIS A 29 ASP A 59 LYS A 62 ASN A 88 SITE 2 AC7 22 HIS A 91 HIS A 117 THR A 118 ASP A 135 SITE 3 AC7 22 ARG A 141 LEU A 172 PRO A 178 ILE A 179 SITE 4 AC7 22 TYR A 180 THR A 183 FE A 301 FE A 302 SITE 5 AC7 22 HOH A 406 HOH A 412 HOH A 414 HOH A 444 SITE 6 AC7 22 HOH A 462 HOH A 515 SITE 1 AC8 25 HIS B 29 ASP B 59 LYS B 62 ASN B 88 SITE 2 AC8 25 HIS B 91 HIS B 117 THR B 118 ASP B 135 SITE 3 AC8 25 ARG B 141 THR B 168 LEU B 172 PRO B 178 SITE 4 AC8 25 TYR B 180 THR B 183 FE B 301 FE B 302 SITE 5 AC8 25 HOH B 413 HOH B 421 HOH B 422 HOH B 442 SITE 6 AC8 25 HOH B 465 HOH B 467 HOH B 494 HOH B 506 SITE 7 AC8 25 HOH B 523 SITE 1 AC9 6 THR B 2 TYR B 3 ARG B 11 ILE B 38 SITE 2 AC9 6 LYS B 48 GLU B 49 CRYST1 65.841 52.535 70.022 90.00 114.29 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015190 0.000000 0.006850 0.00000 SCALE2 0.000000 0.019040 0.000000 0.00000 SCALE3 0.000000 0.000000 0.015670 0.00000