HEADER STRUCTURAL PROTEIN, RNA BINDING PROTEIN 09-JAN-07 2OH6 TITLE THE CRYSTAL STRUCTURE OF RECOMBINANT CYPOVIRUS POLYHEDRA COMPND MOL_ID: 1; COMPND 2 MOLECULE: POLYHEDRIN; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: C-POLYHEDRIN; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BOMBYX MORI CYPOVIRUS 1; SOURCE 3 ORGANISM_TAXID: 110829; SOURCE 4 STRAIN: CPV1; SOURCE 5 GENE: POLYHEDRIN; SOURCE 6 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 7 EXPRESSION_SYSTEM_COMMON: FALL ARMYWORM; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 7108; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: SF21 (IPLB-SF21AE); SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: BACULOVIRUS KEYWDS BETA SANDWICH, INTRACELLULAR CRYSTAL, NUCLEOTIDE BINDING, STRUCTURAL KEYWDS 2 PROTEIN, RNA BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR F.COULIBALY,E.CHIU,K.IKEDA,S.GUTMANN,P.W.HAEBEL,C.SCHULZE-BRIESE, AUTHOR 2 H.MORI,P.METCALF REVDAT 6 13-NOV-24 2OH6 1 REMARK REVDAT 5 27-DEC-23 2OH6 1 REMARK REVDAT 4 20-OCT-21 2OH6 1 REMARK SEQADV LINK REVDAT 3 18-OCT-17 2OH6 1 REMARK REVDAT 2 24-FEB-09 2OH6 1 VERSN REVDAT 1 06-MAR-07 2OH6 0 JRNL AUTH F.COULIBALY,E.CHIU,K.IKEDA,S.GUTMANN,P.W.HAEBEL, JRNL AUTH 2 C.SCHULZE-BRIESE,H.MORI,P.METCALF JRNL TITL THE MOLECULAR ORGANIZATION OF CYPOVIRUS POLYHEDRA. JRNL REF NATURE V. 446 97 2007 JRNL REFN ISSN 0028-0836 JRNL PMID 17330045 JRNL DOI 10.1038/NATURE05628 REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 14.50 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.9 REMARK 3 NUMBER OF REFLECTIONS : 10471 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.135 REMARK 3 R VALUE (WORKING SET) : 0.129 REMARK 3 FREE R VALUE : 0.196 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 9.900 REMARK 3 FREE R VALUE TEST SET COUNT : 1037 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.10 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.15 REMARK 3 REFLECTION IN BIN (WORKING SET) : 680 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 97.99 REMARK 3 BIN R VALUE (WORKING SET) : 0.1660 REMARK 3 BIN FREE R VALUE SET COUNT : 53 REMARK 3 BIN FREE R VALUE : 0.2450 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2007 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 95 REMARK 3 SOLVENT ATOMS : 142 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 17.10 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 15.52 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.626 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.209 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.124 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.671 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.970 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.938 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2157 ; 0.012 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): 1412 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2946 ; 1.378 ; 1.983 REMARK 3 BOND ANGLES OTHERS (DEGREES): 3397 ; 0.837 ; 3.001 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 246 ; 6.575 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 113 ;38.142 ;23.805 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 327 ;13.003 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 14 ;19.331 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 297 ; 0.081 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2381 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 454 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 416 ; 0.206 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 1477 ; 0.191 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1042 ; 0.188 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 1115 ; 0.084 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 130 ; 0.176 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): 1 ; 0.047 ; 0.200 REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 55 ; 0.168 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 190 ; 0.259 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 59 ; 0.183 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1591 ; 0.832 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 500 ; 0.152 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1982 ; 1.068 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1129 ; 1.858 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 964 ; 2.717 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 2OH6 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 26-JAN-07. REMARK 100 THE DEPOSITION ID IS D_1000041130. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 03-MAY-05 REMARK 200 TEMPERATURE (KELVIN) : 120 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 2 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X06SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97885 REMARK 200 MONOCHROMATOR : SAGITTALLY HORIZONTAL FOCUSSING REMARK 200 SI(111); MERIDIONALLY VERTICAL REMARK 200 FOCUSSING RH-COATED MIRROR REMARK 200 OPTICS : MD2 DIFFRACTOMETER REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MAR CCD 165 MM REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 10547 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.100 REMARK 200 RESOLUTION RANGE LOW (A) : 15.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.9 REMARK 200 DATA REDUNDANCY : 3.600 REMARK 200 R MERGE (I) : 0.13200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 8.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.17 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.2 REMARK 200 DATA REDUNDANCY IN SHELL : 2.60 REMARK 200 R MERGE FOR SHELL (I) : 0.43500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MIR REMARK 200 SOFTWARE USED: SHARP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): NULL REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): NULL REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: THE CRYSTALS USED TO DETERMINE THIS REMARK 280 STRUCTURE WERE DIRECTLY PURIFIED FROM CELLS, IN VIVO REMARK 280 CRYSTALLIZATION IN THE CYTOPLASM OF THE CELL, TEMPERATURE 300K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 3 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 Z,X,Y REMARK 290 6555 Z,-X,-Y REMARK 290 7555 -Z,-X,Y REMARK 290 8555 -Z,X,-Y REMARK 290 9555 Y,Z,X REMARK 290 10555 -Y,Z,-X REMARK 290 11555 Y,-Z,-X REMARK 290 12555 -Y,-Z,X REMARK 290 13555 X+1/2,Y+1/2,Z+1/2 REMARK 290 14555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 15555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 16555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 17555 Z+1/2,X+1/2,Y+1/2 REMARK 290 18555 Z+1/2,-X+1/2,-Y+1/2 REMARK 290 19555 -Z+1/2,-X+1/2,Y+1/2 REMARK 290 20555 -Z+1/2,X+1/2,-Y+1/2 REMARK 290 21555 Y+1/2,Z+1/2,X+1/2 REMARK 290 22555 -Y+1/2,Z+1/2,-X+1/2 REMARK 290 23555 Y+1/2,-Z+1/2,-X+1/2 REMARK 290 24555 -Y+1/2,-Z+1/2,X+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 6 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 6 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 7 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 9 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 9 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 9 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 10 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 10 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 10 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 12 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 12 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 12 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 13 1.000000 0.000000 0.000000 51.47750 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 51.47750 REMARK 290 SMTRY3 13 0.000000 0.000000 1.000000 51.47750 REMARK 290 SMTRY1 14 -1.000000 0.000000 0.000000 51.47750 REMARK 290 SMTRY2 14 0.000000 -1.000000 0.000000 51.47750 REMARK 290 SMTRY3 14 0.000000 0.000000 1.000000 51.47750 REMARK 290 SMTRY1 15 -1.000000 0.000000 0.000000 51.47750 REMARK 290 SMTRY2 15 0.000000 1.000000 0.000000 51.47750 REMARK 290 SMTRY3 15 0.000000 0.000000 -1.000000 51.47750 REMARK 290 SMTRY1 16 1.000000 0.000000 0.000000 51.47750 REMARK 290 SMTRY2 16 0.000000 -1.000000 0.000000 51.47750 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 51.47750 REMARK 290 SMTRY1 17 0.000000 0.000000 1.000000 51.47750 REMARK 290 SMTRY2 17 1.000000 0.000000 0.000000 51.47750 REMARK 290 SMTRY3 17 0.000000 1.000000 0.000000 51.47750 REMARK 290 SMTRY1 18 0.000000 0.000000 1.000000 51.47750 REMARK 290 SMTRY2 18 -1.000000 0.000000 0.000000 51.47750 REMARK 290 SMTRY3 18 0.000000 -1.000000 0.000000 51.47750 REMARK 290 SMTRY1 19 0.000000 0.000000 -1.000000 51.47750 REMARK 290 SMTRY2 19 -1.000000 0.000000 0.000000 51.47750 REMARK 290 SMTRY3 19 0.000000 1.000000 0.000000 51.47750 REMARK 290 SMTRY1 20 0.000000 0.000000 -1.000000 51.47750 REMARK 290 SMTRY2 20 1.000000 0.000000 0.000000 51.47750 REMARK 290 SMTRY3 20 0.000000 -1.000000 0.000000 51.47750 REMARK 290 SMTRY1 21 0.000000 1.000000 0.000000 51.47750 REMARK 290 SMTRY2 21 0.000000 0.000000 1.000000 51.47750 REMARK 290 SMTRY3 21 1.000000 0.000000 0.000000 51.47750 REMARK 290 SMTRY1 22 0.000000 -1.000000 0.000000 51.47750 REMARK 290 SMTRY2 22 0.000000 0.000000 1.000000 51.47750 REMARK 290 SMTRY3 22 -1.000000 0.000000 0.000000 51.47750 REMARK 290 SMTRY1 23 0.000000 1.000000 0.000000 51.47750 REMARK 290 SMTRY2 23 0.000000 0.000000 -1.000000 51.47750 REMARK 290 SMTRY3 23 -1.000000 0.000000 0.000000 51.47750 REMARK 290 SMTRY1 24 0.000000 -1.000000 0.000000 51.47750 REMARK 290 SMTRY2 24 0.000000 0.000000 -1.000000 51.47750 REMARK 290 SMTRY3 24 1.000000 0.000000 0.000000 51.47750 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE WHOLE MICRON-SIZED CRYSTALS, CALLED POLYHEDRA, ARE THE REMARK 300 BIOLOGICAL UNITS. POLYHEDRA CRYSTALLIZE IN THE CYTOPLASM OF CPV- REMARK 300 INFECTED INSECT CELLS AND PROTECT THE VIRUS PARTICLES. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DODECAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT2 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT1 3 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT3 3 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT1 4 -1.000000 0.000000 0.000000 102.95500 REMARK 350 BIOMT2 4 0.000000 -1.000000 0.000000 102.95500 REMARK 350 BIOMT3 4 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 5 0.000000 0.000000 -1.000000 102.95500 REMARK 350 BIOMT2 5 -1.000000 0.000000 0.000000 102.95500 REMARK 350 BIOMT3 5 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT1 6 0.000000 -1.000000 0.000000 102.95500 REMARK 350 BIOMT2 6 0.000000 0.000000 -1.000000 102.95500 REMARK 350 BIOMT3 6 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT1 7 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 7 0.000000 -1.000000 0.000000 102.95500 REMARK 350 BIOMT3 7 0.000000 0.000000 -1.000000 102.95500 REMARK 350 BIOMT1 8 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT2 8 -1.000000 0.000000 0.000000 102.95500 REMARK 350 BIOMT3 8 0.000000 -1.000000 0.000000 102.95500 REMARK 350 BIOMT1 9 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 9 0.000000 0.000000 -1.000000 102.95500 REMARK 350 BIOMT3 9 -1.000000 0.000000 0.000000 102.95500 REMARK 350 BIOMT1 10 -1.000000 0.000000 0.000000 102.95500 REMARK 350 BIOMT2 10 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 10 0.000000 0.000000 -1.000000 102.95500 REMARK 350 BIOMT1 11 0.000000 0.000000 -1.000000 102.95500 REMARK 350 BIOMT2 11 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 11 0.000000 -1.000000 0.000000 102.95500 REMARK 350 BIOMT1 12 0.000000 -1.000000 0.000000 102.95500 REMARK 350 BIOMT2 12 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT3 12 -1.000000 0.000000 0.000000 102.95500 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 323 O HOH A 324 2.01 REMARK 500 O HOH A 272 O HOH A 273 2.11 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 308 O HOH A 308 5555 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR A 57 -53.58 72.98 REMARK 500 SER A 131 46.51 72.91 REMARK 500 GLU A 135 -60.79 76.20 REMARK 500 LYS A 184 135.27 -38.88 REMARK 500 TYR A 224 -60.86 -127.61 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 250 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CTP A 254 O3G REMARK 620 2 CTP A 254 O1A 95.5 REMARK 620 3 CTP A 254 O1B 89.5 88.9 REMARK 620 4 HOH A 286 O 98.6 165.9 92.3 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 251 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ATP A 253 O1A REMARK 620 2 ATP A 253 O2G 89.8 REMARK 620 3 ATP A 253 O1B 90.2 92.7 REMARK 620 4 HOH A 327 O 76.8 99.0 162.4 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 249 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 250 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 251 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GTP A 252 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ATP A 253 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CTP A 254 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2OH5 RELATED DB: PDB REMARK 900 RELATED ID: 2OH7 RELATED DB: PDB DBREF 2OH6 A 2 248 UNP O10693 O10693_CPVBM 2 248 SEQADV 2OH6 ACE A 1 UNP O10693 MODIFIED RESIDUE SEQADV 2OH6 SER A 29 UNP O10693 ASN 29 ENGINEERED MUTATION SEQRES 1 A 248 ACE ALA ASP VAL ALA GLY THR SER ASN ARG ASP PHE ARG SEQRES 2 A 248 GLY ARG GLU GLN ARG LEU PHE ASN SER GLU GLN TYR ASN SEQRES 3 A 248 TYR ASN SER SER LEU ASN GLY GLU VAL SER VAL TRP VAL SEQRES 4 A 248 TYR ALA TYR TYR SER ASP GLY SER VAL LEU VAL ILE ASN SEQRES 5 A 248 LYS ASN SER GLN TYR LYS VAL GLY ILE SER GLU THR PHE SEQRES 6 A 248 LYS ALA LEU LYS GLU TYR ARG LYS GLY GLN HIS ASN ASP SEQRES 7 A 248 SER TYR ASP GLU TYR GLU VAL ASN GLN SER ILE TYR TYR SEQRES 8 A 248 PRO ASN GLY GLY ASP ALA ARG LYS PHE HIS SER ASN ALA SEQRES 9 A 248 LYS PRO ARG ALA ILE GLN ILE ILE PHE SER PRO SER VAL SEQRES 10 A 248 ASN VAL ARG THR ILE LYS MET ALA LYS GLY ASN ALA VAL SEQRES 11 A 248 SER VAL PRO ASP GLU TYR LEU GLN ARG SER HIS PRO TRP SEQRES 12 A 248 GLU ALA THR GLY ILE LYS TYR ARG LYS ILE LYS ARG ASP SEQRES 13 A 248 GLY GLU ILE VAL GLY TYR SER HIS TYR PHE GLU LEU PRO SEQRES 14 A 248 HIS GLU TYR ASN SER ILE SER LEU ALA VAL SER GLY VAL SEQRES 15 A 248 HIS LYS ASN PRO SER SER TYR ASN VAL GLY SER ALA HIS SEQRES 16 A 248 ASN VAL MET ASP VAL PHE GLN SER CYS ASP LEU ALA LEU SEQRES 17 A 248 ARG PHE CYS ASN ARG TYR TRP ALA GLU LEU GLU LEU VAL SEQRES 18 A 248 ASN HIS TYR ILE SER PRO ASN ALA TYR PRO TYR LEU ASP SEQRES 19 A 248 ILE ASN ASN HIS SER TYR GLY VAL ALA LEU SER ASN ARG SEQRES 20 A 248 GLN HET ACE A 1 3 HET CL A 249 1 HET MG A 250 1 HET MG A 251 1 HET GTP A 252 32 HET ATP A 253 31 HET CTP A 254 29 HETNAM ACE ACETYL GROUP HETNAM CL CHLORIDE ION HETNAM MG MAGNESIUM ION HETNAM GTP GUANOSINE-5'-TRIPHOSPHATE HETNAM ATP ADENOSINE-5'-TRIPHOSPHATE HETNAM CTP CYTIDINE-5'-TRIPHOSPHATE FORMUL 1 ACE C2 H4 O FORMUL 2 CL CL 1- FORMUL 3 MG 2(MG 2+) FORMUL 5 GTP C10 H16 N5 O14 P3 FORMUL 6 ATP C10 H16 N5 O13 P3 FORMUL 7 CTP C9 H16 N3 O14 P3 FORMUL 8 HOH *142(H2 O) HELIX 1 1 ASP A 11 SER A 30 1 20 HELIX 2 2 THR A 64 LYS A 69 1 6 HELIX 3 3 ASP A 78 TYR A 91 1 14 HELIX 4 4 ASN A 118 ILE A 122 5 5 HELIX 5 5 TYR A 136 SER A 140 5 5 HELIX 6 6 THR A 146 TYR A 150 5 5 HELIX 7 7 ASN A 196 ALA A 207 1 12 HELIX 8 8 ALA A 216 TYR A 224 1 9 SHEET 1 A 6 ARG A 151 ARG A 155 0 SHEET 2 A 6 GLU A 158 GLU A 167 -1 O GLY A 161 N ILE A 153 SHEET 3 A 6 ALA A 108 PHE A 113 -1 N ILE A 111 O HIS A 164 SHEET 4 A 6 VAL A 35 TYR A 42 -1 N TYR A 40 O GLN A 110 SHEET 5 A 6 VAL A 48 SER A 55 -1 O SER A 55 N VAL A 35 SHEET 6 A 6 LEU A 208 TYR A 214 -1 O PHE A 210 N ASN A 52 SHEET 1 B 3 LYS A 58 GLU A 63 0 SHEET 2 B 3 SER A 176 VAL A 182 -1 O LEU A 177 N GLU A 63 SHEET 3 B 3 LYS A 123 GLY A 127 -1 N ALA A 125 O ALA A 178 SHEET 1 C 2 TYR A 232 LEU A 233 0 SHEET 2 C 2 SER A 239 TYR A 240 -1 O TYR A 240 N TYR A 232 LINK C ACE A 1 N ALA A 2 1555 1555 1.32 LINK MG MG A 250 O3G CTP A 254 1555 1555 2.07 LINK MG MG A 250 O1A CTP A 254 1555 1555 2.18 LINK MG MG A 250 O1B CTP A 254 1555 1555 2.16 LINK MG MG A 250 O HOH A 286 1555 1555 2.37 LINK MG MG A 251 O1A ATP A 253 1555 1555 2.10 LINK MG MG A 251 O2G ATP A 253 1555 1555 1.94 LINK MG MG A 251 O1B ATP A 253 1555 1555 2.05 LINK MG MG A 251 O HOH A 327 1555 1555 2.19 SITE 1 AC1 3 ALA A 2 LEU A 31 HOH A 379 SITE 1 AC2 2 CTP A 254 HOH A 286 SITE 1 AC3 2 ATP A 253 HOH A 327 SITE 1 AC4 10 ASN A 9 ARG A 10 ARG A 18 ASP A 156 SITE 2 AC4 10 HIS A 170 TYR A 172 ASN A 173 LYS A 184 SITE 3 AC4 10 ATP A 253 HOH A 326 SITE 1 AC5 15 LYS A 152 LYS A 154 ARG A 155 ASP A 156 SITE 2 AC5 15 GLY A 157 ILE A 159 LYS A 184 MG A 251 SITE 3 AC5 15 GTP A 252 HOH A 268 HOH A 269 HOH A 315 SITE 4 AC5 15 HOH A 326 HOH A 327 HOH A 395 SITE 1 AC6 12 HIS A 76 ASN A 77 ASP A 78 SER A 79 SITE 2 AC6 12 TYR A 80 ASP A 81 ASP A 96 ARG A 98 SITE 3 AC6 12 MG A 250 HOH A 287 HOH A 288 HOH A 367 CRYST1 102.955 102.955 102.955 90.00 90.00 90.00 I 2 3 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009713 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009713 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009713 0.00000 HETATM 1 C ACE A 1 67.971 -10.885 9.240 1.00 22.08 C HETATM 2 O ACE A 1 67.431 -11.069 8.148 1.00 22.42 O HETATM 3 CH3 ACE A 1 69.196 -11.653 9.638 1.00 22.34 C