HEADER HYDROLASE 10-JAN-07 2OHC TITLE STRUCTURAL AND MUTATIONAL ANALYSIS OF TRNA-INTRON SPLICING TITLE 2 ENDONUCLEASE FROM THERMOPLASMA ACIDOPHILUM DSM1728 COMPND MOL_ID: 1; COMPND 2 MOLECULE: TRNA-SPLICING ENDONUCLEASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: TRNA-INTRON SPLICING ENDONUCLEASE, TRNA-INTRON ENDONUCLEASE; COMPND 5 EC: 3.1.27.9; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: THERMOPLASMA ACIDOPHILUM; SOURCE 3 ORGANISM_TAXID: 273075; SOURCE 4 STRAIN: DSM 1728; SOURCE 5 GENE: ENDA; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL 21 DE3; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET28A KEYWDS TRNA, INTRON, SPLICING, ENDONUCLEASE, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR Y.K.KIM,K.MIZUTANI,K.H.RHEE,W.H.LEE,S.Y.PARK,K.Y.HWANG REVDAT 5 03-APR-24 2OHC 1 REMARK REVDAT 4 27-DEC-23 2OHC 1 SEQADV REVDAT 3 13-JUL-11 2OHC 1 VERSN REVDAT 2 24-FEB-09 2OHC 1 VERSN REVDAT 1 27-NOV-07 2OHC 0 JRNL AUTH Y.K.KIM,K.MIZUTANI,K.H.RHEE,K.H.NAM,W.H.LEE,E.H.LEE,E.E.KIM, JRNL AUTH 2 S.Y.PARK,K.Y.HWANG JRNL TITL STRUCTURAL AND MUTATIONAL ANALYSIS OF TRNA INTRON-SPLICING JRNL TITL 2 ENDONUCLEASE FROM THERMOPLASMA ACIDOPHILUM DSM 1728: JRNL TITL 3 CATALYTIC MECHANISM OF TRNA INTRON-SPLICING ENDONUCLEASES JRNL REF J.BACTERIOL. V. 189 8339 2007 JRNL REFN ISSN 0021-9193 JRNL PMID 17827289 JRNL DOI 10.1128/JB.00713-07 REMARK 2 REMARK 2 RESOLUTION. 2.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.99 REMARK 3 DATA CUTOFF (SIGMA(F)) : 2.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 207206.040 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 90.9 REMARK 3 NUMBER OF REFLECTIONS : 25421 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.224 REMARK 3 FREE R VALUE : 0.285 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1282 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.008 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.50 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.66 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 76.40 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 3268 REMARK 3 BIN R VALUE (WORKING SET) : 0.2710 REMARK 3 BIN FREE R VALUE : 0.3220 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 5.20 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 178 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.024 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4686 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 312 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 26.50 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 45.10 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 4.76000 REMARK 3 B22 (A**2) : 4.76000 REMARK 3 B33 (A**2) : -9.52000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.31 REMARK 3 ESD FROM SIGMAA (A) : 0.29 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.41 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.37 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.009 REMARK 3 BOND ANGLES (DEGREES) : 1.400 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 24.00 REMARK 3 IMPROPER ANGLES (DEGREES) : 0.830 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.35 REMARK 3 BSOL : 40.03 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : DNA-RNA_REP.PARAM REMARK 3 PARAMETER FILE 3 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 4 : ION.PARAM REMARK 3 PARAMETER FILE 5 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : DNA-RNA.TOP REMARK 3 TOPOLOGY FILE 3 : WATER.TOP REMARK 3 TOPOLOGY FILE 4 : ION.TOP REMARK 3 TOPOLOGY FILE 5 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2OHC COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 17-JAN-07. REMARK 100 THE DEPOSITION ID IS D_1000041136. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 06-JUL-06 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PAL/PLS REMARK 200 BEAMLINE : 4A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.00000 REMARK 200 MONOCHROMATOR : WIGGLER REMARK 200 OPTICS : WIGGLER REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 49839 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.500 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.2 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.06200 REMARK 200 FOR THE DATA SET : 26.2500 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.54 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.34000 REMARK 200 FOR SHELL : 3.690 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: CNS REMARK 200 STARTING MODEL: MONOCLINIC FORM REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 56.45 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.82 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 2.9M NACL, 0.1M CITRIC ACID, PH 5.6, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 229.95500 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 28.58500 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 28.58500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 344.93250 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 28.58500 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 28.58500 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 114.97750 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 28.58500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 28.58500 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 344.93250 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 28.58500 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 28.58500 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 114.97750 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 229.95500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA,PQS REMARK 350 TOTAL BURIED SURFACE AREA: 3840 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 26840 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -18.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET B 1 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O PHE A 64 O VAL A 67 1.59 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OD1 ASN B 20 NH1 ARG B 232 8662 1.79 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 VAL B 243 CB VAL B 243 CG2 -0.137 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 MET B 244 CG - SD - CE ANGL. DEV. = -10.7 DEGREES REMARK 500 GLU B 247 N - CA - C ANGL. DEV. = -26.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 8 22.03 -141.64 REMARK 500 ASP A 34 -3.33 73.70 REMARK 500 ASN A 80 12.88 -61.39 REMARK 500 ASP A 88 121.99 -175.83 REMARK 500 GLU A 131 7.71 -64.92 REMARK 500 PHE A 144 71.71 53.18 REMARK 500 TRP A 173 -35.99 -32.32 REMARK 500 PHE A 179 89.02 -155.53 REMARK 500 HIS A 197 -5.44 -59.12 REMARK 500 SER A 200 -173.38 -172.66 REMARK 500 GLN A 235 -29.65 -38.55 REMARK 500 GLU A 246 -34.01 -34.20 REMARK 500 ASN A 275 30.35 70.82 REMARK 500 SER B 8 6.32 83.96 REMARK 500 LYS B 27 43.42 39.07 REMARK 500 ASN B 56 -155.93 -78.82 REMARK 500 SER B 57 -1.51 -149.15 REMARK 500 ASP B 88 -153.26 -77.61 REMARK 500 SER B 89 83.85 -62.26 REMARK 500 GLU B 131 0.09 -67.05 REMARK 500 GLU B 172 127.51 -35.84 REMARK 500 ASN B 196 57.17 -107.26 REMARK 500 ASP B 233 68.36 -162.22 REMARK 500 PRO B 245 -164.02 -76.31 REMARK 500 GLU B 247 33.26 -152.94 REMARK 500 ASP B 287 40.71 -100.32 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 THR A 66 VAL A 67 142.00 REMARK 500 GLU B 246 GLU B 247 -77.30 REMARK 500 GLU B 247 GLU B 248 -148.43 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 TYR A 72 0.06 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2OHE RELATED DB: PDB DBREF 2OHC A 1 289 UNP Q9HIY5 ENDA_THEAC 1 289 DBREF 2OHC B 1 289 UNP Q9HIY5 ENDA_THEAC 1 289 SEQADV 2OHC GLY A 146 UNP Q9HIY5 ALA 146 CONFLICT SEQADV 2OHC GLY B 146 UNP Q9HIY5 ALA 146 CONFLICT SEQRES 1 A 289 MET GLU GLN GLY ILE CYS GLY SER HIS VAL PHE PHE ILE SEQRES 2 A 289 GLU ASP GLY LYS SER LYS ASN TYR ILE ILE GLY LYS TYR SEQRES 3 A 289 LYS ILE GLY TYR LEU SER GLY ASP ASN LEU ILE LEU ASP SEQRES 4 A 289 PRO TYR GLU CYS LEU TYR LEU TYR PHE LYS GLY ARG ILE SEQRES 5 A 289 SER PHE GLN ASN SER ASP SER PHE ARG ASP LEU PHE ASP SEQRES 6 A 289 THR VAL THR PHE ASP ARG TYR VAL ALA TYR GLU ILE LEU SEQRES 7 A 289 LYS ASN LYS GLY TYR ARG VAL LYS GLU ASP SER GLY LEU SEQRES 8 A 289 ILE TYR PHE ARG LYS GLY THR GLU LYS PRO LEU SER LEU SEQRES 9 A 289 ARG VAL MET ARG GLU TYR ASP ARG ILE GLN PHE SER ASP SEQRES 10 A 289 LEU VAL GLU ASN PRO VAL ASP TYR TYR PHE THR VAL ASP SEQRES 11 A 289 GLU GLU GLY ASP PRO THR VAL TYR SER SER GLN GLU ILE SEQRES 12 A 289 PHE PRO GLY GLY ARG ASN LEU VAL SER PRO VAL SER ALA SEQRES 13 A 289 PRO VAL VAL ARG MET GLY GLY ARG SER PHE GLY ALA GLY SEQRES 14 A 289 ASP LEU GLU TRP TRP ILE GLY THR ALA PHE HIS GLY PHE SEQRES 15 A 289 ARG LEU LEU THR GLU ASN GLU ALA ASN TYR ILE SER GLY SEQRES 16 A 289 ASN HIS SER ALA SER GLN VAL ASP MET VAL TYR SER ASP SEQRES 17 A 289 LEU VAL GLY ARG GLY CYS ILE VAL LYS THR GLY PHE LYS SEQRES 18 A 289 TYR GLY ALA ASN PHE ARG VAL TYR LEU GLY ARG ASP SER SEQRES 19 A 289 GLN HIS ALA GLU TYR LEU VAL SER VAL MET PRO GLU GLU SEQRES 20 A 289 GLU ARG TRP TYR SER ILE SER ARG GLY VAL ARG VAL ALA SEQRES 21 A 289 SER SER VAL ARG LYS THR MET ILE TYR ALA SER ILE TYR SEQRES 22 A 289 LYS ASN GLU VAL ARG TYR VAL ALA LEU LYS ARG VAL LYS SEQRES 23 A 289 ASP ILE ILE SEQRES 1 B 289 MET GLU GLN GLY ILE CYS GLY SER HIS VAL PHE PHE ILE SEQRES 2 B 289 GLU ASP GLY LYS SER LYS ASN TYR ILE ILE GLY LYS TYR SEQRES 3 B 289 LYS ILE GLY TYR LEU SER GLY ASP ASN LEU ILE LEU ASP SEQRES 4 B 289 PRO TYR GLU CYS LEU TYR LEU TYR PHE LYS GLY ARG ILE SEQRES 5 B 289 SER PHE GLN ASN SER ASP SER PHE ARG ASP LEU PHE ASP SEQRES 6 B 289 THR VAL THR PHE ASP ARG TYR VAL ALA TYR GLU ILE LEU SEQRES 7 B 289 LYS ASN LYS GLY TYR ARG VAL LYS GLU ASP SER GLY LEU SEQRES 8 B 289 ILE TYR PHE ARG LYS GLY THR GLU LYS PRO LEU SER LEU SEQRES 9 B 289 ARG VAL MET ARG GLU TYR ASP ARG ILE GLN PHE SER ASP SEQRES 10 B 289 LEU VAL GLU ASN PRO VAL ASP TYR TYR PHE THR VAL ASP SEQRES 11 B 289 GLU GLU GLY ASP PRO THR VAL TYR SER SER GLN GLU ILE SEQRES 12 B 289 PHE PRO GLY GLY ARG ASN LEU VAL SER PRO VAL SER ALA SEQRES 13 B 289 PRO VAL VAL ARG MET GLY GLY ARG SER PHE GLY ALA GLY SEQRES 14 B 289 ASP LEU GLU TRP TRP ILE GLY THR ALA PHE HIS GLY PHE SEQRES 15 B 289 ARG LEU LEU THR GLU ASN GLU ALA ASN TYR ILE SER GLY SEQRES 16 B 289 ASN HIS SER ALA SER GLN VAL ASP MET VAL TYR SER ASP SEQRES 17 B 289 LEU VAL GLY ARG GLY CYS ILE VAL LYS THR GLY PHE LYS SEQRES 18 B 289 TYR GLY ALA ASN PHE ARG VAL TYR LEU GLY ARG ASP SER SEQRES 19 B 289 GLN HIS ALA GLU TYR LEU VAL SER VAL MET PRO GLU GLU SEQRES 20 B 289 GLU ARG TRP TYR SER ILE SER ARG GLY VAL ARG VAL ALA SEQRES 21 B 289 SER SER VAL ARG LYS THR MET ILE TYR ALA SER ILE TYR SEQRES 22 B 289 LYS ASN GLU VAL ARG TYR VAL ALA LEU LYS ARG VAL LYS SEQRES 23 B 289 ASP ILE ILE FORMUL 3 HOH *312(H2 O) HELIX 1 1 SER A 18 LYS A 27 1 10 HELIX 2 2 ASP A 39 LYS A 49 1 11 HELIX 3 3 ASP A 58 VAL A 67 1 10 HELIX 4 4 THR A 68 ASN A 80 1 13 HELIX 5 5 GLN A 114 GLU A 120 1 7 HELIX 6 6 THR A 186 SER A 194 1 9 HELIX 7 7 SER A 200 ARG A 212 1 13 HELIX 8 8 PHE A 220 GLY A 223 5 4 HELIX 9 9 TRP A 250 VAL A 263 1 14 HELIX 10 10 SER B 18 LYS B 27 1 10 HELIX 11 11 ASP B 39 PHE B 48 1 10 HELIX 12 12 ASP B 58 VAL B 67 1 10 HELIX 13 13 THR B 68 GLY B 82 1 15 HELIX 14 14 GLN B 114 ASN B 121 1 8 HELIX 15 15 THR B 186 SER B 194 1 9 HELIX 16 16 SER B 200 ARG B 212 1 13 HELIX 17 17 PHE B 220 GLY B 223 5 4 HELIX 18 18 ARG B 249 VAL B 263 1 15 SHEET 1 A 5 TYR A 30 SER A 32 0 SHEET 2 A 5 ASN A 35 ILE A 37 -1 O ILE A 37 N TYR A 30 SHEET 3 A 5 GLN A 3 CYS A 6 1 N GLN A 3 O LEU A 36 SHEET 4 A 5 HIS A 9 ILE A 13 -1 O HIS A 9 N CYS A 6 SHEET 5 A 5 ILE A 52 PHE A 54 -1 O SER A 53 N PHE A 12 SHEET 1 B10 ARG A 84 ASP A 88 0 SHEET 2 B10 LEU A 91 ARG A 95 -1 O LEU A 91 N ASP A 88 SHEET 3 B10 LEU A 102 VAL A 106 -1 O LEU A 104 N ILE A 92 SHEET 4 B10 TYR A 125 VAL A 129 1 O PHE A 127 N ARG A 105 SHEET 5 B10 PRO A 135 GLU A 142 -1 O THR A 136 N THR A 128 SHEET 6 B10 GLU A 276 ARG A 284 -1 O ALA A 281 N GLN A 141 SHEET 7 B10 THR A 266 TYR A 273 -1 N TYR A 269 O VAL A 280 SHEET 8 B10 TYR A 239 VAL A 243 1 N LEU A 240 O ILE A 268 SHEET 9 B10 PHE A 226 TYR A 229 -1 N PHE A 226 O VAL A 241 SHEET 10 B10 ILE A 215 THR A 218 -1 N LYS A 217 O ARG A 227 SHEET 1 C 2 ARG A 112 ILE A 113 0 SHEET 2 C 2 GLU A 248 ARG A 249 -1 O GLU A 248 N ILE A 113 SHEET 1 D 4 VAL A 159 MET A 161 0 SHEET 2 D 4 ARG A 164 ALA A 168 -1 O PHE A 166 N VAL A 159 SHEET 3 D 4 PHE A 182 LEU A 185 -1 O LEU A 185 N SER A 165 SHEET 4 D 4 THR A 177 PHE A 179 -1 N THR A 177 O LEU A 184 SHEET 1 E 5 TYR B 30 LEU B 31 0 SHEET 2 E 5 LEU B 36 ILE B 37 -1 O ILE B 37 N TYR B 30 SHEET 3 E 5 GLY B 4 CYS B 6 1 N ILE B 5 O LEU B 36 SHEET 4 E 5 HIS B 9 ILE B 13 -1 O HIS B 9 N CYS B 6 SHEET 5 E 5 ILE B 52 PHE B 54 -1 O SER B 53 N PHE B 12 SHEET 1 F10 ARG B 84 GLU B 87 0 SHEET 2 F10 LEU B 91 ARG B 95 -1 O TYR B 93 N LYS B 86 SHEET 3 F10 LEU B 102 VAL B 106 -1 O LEU B 104 N ILE B 92 SHEET 4 F10 TYR B 125 VAL B 129 1 O PHE B 127 N ARG B 105 SHEET 5 F10 PRO B 135 ILE B 143 -1 O THR B 136 N THR B 128 SHEET 6 F10 GLU B 276 VAL B 285 -1 O VAL B 285 N VAL B 137 SHEET 7 F10 THR B 266 TYR B 273 -1 N TYR B 273 O GLU B 276 SHEET 8 F10 TYR B 239 VAL B 243 1 N LEU B 240 O ILE B 268 SHEET 9 F10 PHE B 226 TYR B 229 -1 N PHE B 226 O VAL B 241 SHEET 10 F10 ILE B 215 THR B 218 -1 N LYS B 217 O ARG B 227 SHEET 1 G 4 VAL B 159 MET B 161 0 SHEET 2 G 4 ARG B 164 GLY B 167 -1 O PHE B 166 N VAL B 159 SHEET 3 G 4 PHE B 182 LEU B 185 -1 O LEU B 185 N SER B 165 SHEET 4 G 4 THR B 177 PHE B 179 -1 N THR B 177 O LEU B 184 SSBOND 1 CYS A 6 CYS A 43 1555 1555 2.03 SSBOND 2 CYS B 6 CYS B 43 1555 1555 2.04 CRYST1 57.170 57.170 459.910 90.00 90.00 90.00 P 43 21 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017492 0.000000 0.000000 0.00000 SCALE2 0.000000 0.017492 0.000000 0.00000 SCALE3 0.000000 0.000000 0.002174 0.00000