HEADER FLUORESCENT PROTEIN 12-JAN-07 2OJK TITLE CRYSTAL STRUCTURE OF GREEN FLUORESCENT PROTEIN FROM ZOANTHUS SP AT 2.2 TITLE 2 A RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: GFP-LIKE FLUORESCENT CHROMOPROTEIN FP506; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: ZFP506; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ZOANTHUS SP.; SOURCE 3 ORGANISM_TAXID: 105402; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: JM109 (DE3); SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PQE30-ZGFP506 KEYWDS GREEN FLUORESCENT PROTEIN, ZOANTHUS SP, CHROMOPHORE STRUCTURE, KEYWDS 2 FLUORESCENT PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR N.V.PLETNEVA,S.V.PLETNEV,T.V.TIKHONOVA,V.Z.PLETNEV REVDAT 6 15-NOV-23 2OJK 1 LINK ATOM REVDAT 5 18-OCT-17 2OJK 1 REMARK REVDAT 4 13-JUL-11 2OJK 1 VERSN REVDAT 3 24-FEB-09 2OJK 1 VERSN REVDAT 2 02-OCT-07 2OJK 1 JRNL REVDAT 1 25-SEP-07 2OJK 0 JRNL AUTH N.PLETNEVA,V.PLETNEV,T.TIKHONOVA,A.A.PAKHOMOV,V.POPOV, JRNL AUTH 2 V.I.MARTYNOV,A.WLODAWER,Z.DAUTER,S.PLETNEV JRNL TITL REFINED CRYSTAL STRUCTURES OF RED AND GREEN FLUORESCENT JRNL TITL 2 PROTEINS FROM THE BUTTON POLYP ZOANTHUS. JRNL REF ACTA CRYSTALLOGR.,SECT.D V. 63 1082 2007 JRNL REFN ISSN 0907-4449 JRNL PMID 17881826 JRNL DOI 10.1107/S0907444907042461 REMARK 2 REMARK 2 RESOLUTION. 2.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 28.13 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.4 REMARK 3 NUMBER OF REFLECTIONS : 42583 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.184 REMARK 3 R VALUE (WORKING SET) : 0.182 REMARK 3 FREE R VALUE : 0.232 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.200 REMARK 3 FREE R VALUE TEST SET COUNT : 2197 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.20 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.26 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3011 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.2660 REMARK 3 BIN FREE R VALUE SET COUNT : 151 REMARK 3 BIN FREE R VALUE : 0.3240 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3618 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 253 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 42.09 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.11000 REMARK 3 B22 (A**2) : 0.11000 REMARK 3 B33 (A**2) : -0.16000 REMARK 3 B12 (A**2) : 0.05000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.163 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.162 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.116 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.584 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.966 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.943 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3739 ; 0.022 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5055 ; 1.869 ; 1.958 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 450 ; 7.151 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 168 ;36.283 ;24.286 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 641 ;15.169 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 16 ;20.243 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 516 ; 0.132 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2880 ; 0.009 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1587 ; 0.210 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 2444 ; 0.309 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 273 ; 0.153 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 59 ; 0.193 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 27 ; 0.141 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2339 ; 1.211 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3651 ; 2.018 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1651 ; 3.071 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1404 ; 4.784 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2OJK COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 24-JAN-07. REMARK 100 THE DEPOSITION ID IS D_1000041215. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 22-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.00 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO, HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 44300 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.200 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 10.40 REMARK 200 R MERGE (I) : 0.09500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.28 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 7.80 REMARK 200 R MERGE FOR SHELL (I) : 0.74100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 68.72 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.93 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M BIS-TRIS PROPANE, 1.8M TRI REMARK 280 -AMMONIUM CITRATE, PH 7.0, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 62 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z REMARK 290 5555 Y,-X+Y,Z+2/3 REMARK 290 6555 X-Y,X,Z+1/3 REMARK 290 7555 Y,X,-Z+2/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+1/3 REMARK 290 10555 -Y,-X,-Z+2/3 REMARK 290 11555 -X+Y,Y,-Z REMARK 290 12555 X,X-Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 180.60600 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 90.30300 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 180.60600 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 90.30300 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 180.60600 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 90.30300 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 180.60600 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 90.30300 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: BIOLOGICAL ASSEMBLY IS A TETRAMER REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA,PQS REMARK 350 TOTAL BURIED SURFACE AREA: 7700 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 34640 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -24.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 -102.53600 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 3 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT1 4 -1.000000 0.000000 0.000000 -102.53600 REMARK 350 BIOMT2 4 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 8030 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 34770 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -37.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 0.866025 0.000000 0.00000 REMARK 350 BIOMT2 2 0.866025 0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 -90.30300 REMARK 350 BIOMT1 3 0.500000 -0.866025 0.000000 -51.26800 REMARK 350 BIOMT2 3 -0.866025 -0.500000 0.000000 -88.79878 REMARK 350 BIOMT3 3 0.000000 0.000000 -1.000000 -90.30300 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 -51.26800 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 -88.79878 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 350 BIOMT2 3 0.866025 0.500000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 -1.000000 -90.30300 REMARK 350 BIOMT1 4 0.500000 -0.866025 0.000000 -51.26800 REMARK 350 BIOMT2 4 -0.866025 -0.500000 0.000000 -88.79878 REMARK 350 BIOMT3 4 0.000000 0.000000 -1.000000 -90.30300 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH B 301 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ALA A 2 REMARK 465 GLN A 3 REMARK 465 MET B 1 REMARK 465 ALA B 2 REMARK 465 GLN B 3 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG B 70 NE - CZ - NH2 ANGL. DEV. = -3.4 DEGREES REMARK 500 ARG B 176 NE - CZ - NH1 ANGL. DEV. = 3.6 DEGREES REMARK 500 ARG B 176 NE - CZ - NH2 ANGL. DEV. = -3.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 5 102.37 -50.49 REMARK 500 ASP A 23 53.29 39.62 REMARK 500 ASN A 130 33.75 70.65 REMARK 500 ASP A 143 50.98 -150.47 REMARK 500 ASN A 144 156.44 76.23 REMARK 500 ASP A 211 -161.23 -125.94 REMARK 500 ASP B 143 53.69 -145.78 REMARK 500 ASN B 144 161.74 74.34 REMARK 500 ARG B 209 37.82 -142.42 REMARK 500 ASP B 211 -150.40 -130.28 REMARK 500 REMARK 500 REMARK: NULL DBREF 2OJK A 1 231 UNP Q9U6Y5 GFPL1_ZOASP 1 231 DBREF 2OJK B 1 231 UNP Q9U6Y5 GFPL1_ZOASP 1 231 SEQADV 2OJK NYG A 66 UNP Q9U6Y5 ASN 66 CHROMOPHORE SEQADV 2OJK NYG A 66 UNP Q9U6Y5 TYR 67 CHROMOPHORE SEQADV 2OJK NYG A 66 UNP Q9U6Y5 GLY 68 CHROMOPHORE SEQADV 2OJK NYG B 66 UNP Q9U6Y5 ASN 66 CHROMOPHORE SEQADV 2OJK NYG B 66 UNP Q9U6Y5 TYR 67 CHROMOPHORE SEQADV 2OJK NYG B 66 UNP Q9U6Y5 GLY 68 CHROMOPHORE SEQRES 1 A 229 MET ALA GLN SER LYS HIS GLY LEU THR LYS GLU MET THR SEQRES 2 A 229 MET LYS TYR ARG MET GLU GLY CYS VAL ASP GLY HIS LYS SEQRES 3 A 229 PHE VAL ILE THR GLY GLU GLY ILE GLY TYR PRO PHE LYS SEQRES 4 A 229 GLY LYS GLN ALA ILE ASN LEU CYS VAL VAL GLU GLY GLY SEQRES 5 A 229 PRO LEU PRO PHE ALA GLU ASP ILE LEU SER ALA ALA PHE SEQRES 6 A 229 NYG ASN ARG VAL PHE THR GLU TYR PRO GLN ASP ILE VAL SEQRES 7 A 229 ASP TYR PHE LYS ASN SER CYS PRO ALA GLY TYR THR TRP SEQRES 8 A 229 ASP ARG SER PHE LEU PHE GLU ASP GLY ALA VAL CYS ILE SEQRES 9 A 229 CYS ASN ALA ASP ILE THR VAL SER VAL GLU GLU ASN CYS SEQRES 10 A 229 MET TYR HIS GLU SER LYS PHE TYR GLY VAL ASN PHE PRO SEQRES 11 A 229 ALA ASP GLY PRO VAL MET LYS LYS MET THR ASP ASN TRP SEQRES 12 A 229 GLU PRO SER CYS GLU LYS ILE ILE PRO VAL PRO LYS GLN SEQRES 13 A 229 GLY ILE LEU LYS GLY ASP VAL SER MET TYR LEU LEU LEU SEQRES 14 A 229 LYS ASP GLY GLY ARG LEU ARG CYS GLN PHE ASP THR VAL SEQRES 15 A 229 TYR LYS ALA LYS SER VAL PRO ARG LYS MET PRO ASP TRP SEQRES 16 A 229 HIS PHE ILE GLN HIS LYS LEU THR ARG GLU ASP ARG SER SEQRES 17 A 229 ASP ALA LYS ASN GLN LYS TRP HIS LEU THR GLU HIS ALA SEQRES 18 A 229 ILE ALA SER GLY SER ALA LEU PRO SEQRES 1 B 229 MET ALA GLN SER LYS HIS GLY LEU THR LYS GLU MET THR SEQRES 2 B 229 MET LYS TYR ARG MET GLU GLY CYS VAL ASP GLY HIS LYS SEQRES 3 B 229 PHE VAL ILE THR GLY GLU GLY ILE GLY TYR PRO PHE LYS SEQRES 4 B 229 GLY LYS GLN ALA ILE ASN LEU CYS VAL VAL GLU GLY GLY SEQRES 5 B 229 PRO LEU PRO PHE ALA GLU ASP ILE LEU SER ALA ALA PHE SEQRES 6 B 229 NYG ASN ARG VAL PHE THR GLU TYR PRO GLN ASP ILE VAL SEQRES 7 B 229 ASP TYR PHE LYS ASN SER CYS PRO ALA GLY TYR THR TRP SEQRES 8 B 229 ASP ARG SER PHE LEU PHE GLU ASP GLY ALA VAL CYS ILE SEQRES 9 B 229 CYS ASN ALA ASP ILE THR VAL SER VAL GLU GLU ASN CYS SEQRES 10 B 229 MET TYR HIS GLU SER LYS PHE TYR GLY VAL ASN PHE PRO SEQRES 11 B 229 ALA ASP GLY PRO VAL MET LYS LYS MET THR ASP ASN TRP SEQRES 12 B 229 GLU PRO SER CYS GLU LYS ILE ILE PRO VAL PRO LYS GLN SEQRES 13 B 229 GLY ILE LEU LYS GLY ASP VAL SER MET TYR LEU LEU LEU SEQRES 14 B 229 LYS ASP GLY GLY ARG LEU ARG CYS GLN PHE ASP THR VAL SEQRES 15 B 229 TYR LYS ALA LYS SER VAL PRO ARG LYS MET PRO ASP TRP SEQRES 16 B 229 HIS PHE ILE GLN HIS LYS LEU THR ARG GLU ASP ARG SER SEQRES 17 B 229 ASP ALA LYS ASN GLN LYS TRP HIS LEU THR GLU HIS ALA SEQRES 18 B 229 ILE ALA SER GLY SER ALA LEU PRO MODRES 2OJK NYG A 66 ASN MODRES 2OJK NYG A 66 TYR MODRES 2OJK NYG A 66 GLY MODRES 2OJK NYG B 66 ASN MODRES 2OJK NYG B 66 TYR MODRES 2OJK NYG B 66 GLY HET NYG A 66 23 HET NYG B 66 23 HETNAM NYG [(4Z)-2-[(1S)-1,3-DIAMINO-3-OXOPROPYL]-4-(4- HETNAM 2 NYG HYDROXYBENZYLIDENE)-5-OXO-4,5-DIHYDRO-1H-IMIDAZOL-1- HETNAM 3 NYG YL]ACETIC ACID HETSYN NYG CHROMOPHORE (ASN-TYR-GLY) FORMUL 1 NYG 2(C15 H16 N4 O5) FORMUL 3 HOH *253(H2 O) HELIX 1 1 SER A 4 LEU A 8 5 5 HELIX 2 2 ALA A 57 SER A 62 5 6 HELIX 3 3 PHE A 83 CYS A 87 5 5 HELIX 4 4 GLY A 135 LYS A 140 1 6 HELIX 5 5 SER B 4 LEU B 8 5 5 HELIX 6 6 ALA B 57 SER B 62 5 6 HELIX 7 7 ASP B 81 SER B 86 1 6 SHEET 1 A13 THR A 142 TRP A 145 0 SHEET 2 A13 LEU A 161 LEU A 171 -1 O LEU A 170 N ASP A 143 SHEET 3 A13 ARG A 176 ALA A 187 -1 O CYS A 179 N MET A 167 SHEET 4 A13 TYR A 91 PHE A 99 -1 N THR A 92 O LYS A 186 SHEET 5 A13 VAL A 104 SER A 114 -1 O CYS A 107 N ARG A 95 SHEET 6 A13 CYS A 119 VAL A 129 -1 O TYR A 121 N THR A 112 SHEET 7 A13 MET A 12 VAL A 22 1 N THR A 13 O MET A 120 SHEET 8 A13 HIS A 25 TYR A 36 -1 O ILE A 29 N MET A 18 SHEET 9 A13 LYS A 41 GLU A 50 -1 O LYS A 41 N TYR A 36 SHEET 10 A13 LYS A 216 SER A 226 -1 O LEU A 219 N ILE A 44 SHEET 11 A13 HIS A 198 ASP A 208 -1 N PHE A 199 O SER A 226 SHEET 12 A13 SER A 148 PRO A 154 -1 N ILE A 152 O HIS A 198 SHEET 13 A13 LEU A 161 LEU A 171 -1 O LYS A 162 N ILE A 153 SHEET 1 B13 THR B 142 TRP B 145 0 SHEET 2 B13 LEU B 161 LEU B 171 -1 O LEU B 170 N ASP B 143 SHEET 3 B13 ARG B 176 ALA B 187 -1 O PHE B 181 N VAL B 165 SHEET 4 B13 TYR B 91 PHE B 99 -1 N THR B 92 O LYS B 186 SHEET 5 B13 VAL B 104 SER B 114 -1 O CYS B 107 N ARG B 95 SHEET 6 B13 CYS B 119 VAL B 129 -1 O TYR B 127 N ILE B 106 SHEET 7 B13 MET B 12 VAL B 22 1 N THR B 13 O MET B 120 SHEET 8 B13 HIS B 25 TYR B 36 -1 O ILE B 29 N MET B 18 SHEET 9 B13 LYS B 41 GLU B 50 -1 O CYS B 47 N THR B 30 SHEET 10 B13 LYS B 216 SER B 226 -1 O TRP B 217 N LEU B 46 SHEET 11 B13 HIS B 198 ASP B 208 -1 N PHE B 199 O SER B 226 SHEET 12 B13 SER B 148 PRO B 154 -1 N GLU B 150 O ILE B 200 SHEET 13 B13 LEU B 161 LEU B 171 -1 O LYS B 162 N ILE B 153 LINK C PHE A 65 N1 NYG A 66 1555 1555 1.33 LINK C3 NYG A 66 N ASN A 69 1555 1555 1.33 LINK C PHE B 65 N1 NYG B 66 1555 1555 1.33 LINK C3 NYG B 66 N ASN B 69 1555 1555 1.34 CISPEP 1 GLY A 52 PRO A 53 0 -4.43 CISPEP 2 CYS A 87 PRO A 88 0 4.36 CISPEP 3 GLY B 52 PRO B 53 0 -1.98 CISPEP 4 CYS B 87 PRO B 88 0 3.53 CRYST1 102.536 102.536 270.909 90.00 90.00 120.00 P 62 2 2 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009753 0.005631 0.000000 0.00000 SCALE2 0.000000 0.011261 0.000000 0.00000 SCALE3 0.000000 0.000000 0.003691 0.00000