HEADER HYDROLASE 16-JAN-07 2OK5 TITLE HUMAN COMPLEMENT FACTOR B COMPND MOL_ID: 1; COMPND 2 MOLECULE: COMPLEMENT FACTOR B; COMPND 3 CHAIN: A; COMPND 4 EC: 3.4.21.47; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: CFB, BF; SOURCE 6 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 7 EXPRESSION_SYSTEM_COMMON: HUMAN; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PABC KEYWDS PRO-ENZYME, SERINE PROTEASE DOMAIN, VON WILLEBRAND FACTOR-A DOMAIN, KEYWDS 2 CCP DOMAIN, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR F.J.MILDER,L.GOMES,A.SCHOUTEN,B.J.C.JANSSEN,E.G.HUIZINGA,R.A.ROMIJN, AUTHOR 2 W.HEMRIKA,A.ROOS,M.R.DAHA,P.GROS REVDAT 8 20-NOV-24 2OK5 1 REMARK REVDAT 7 30-AUG-23 2OK5 1 REMARK REVDAT 6 31-MAR-21 2OK5 1 SOURCE HETSYN REVDAT 5 29-JUL-20 2OK5 1 COMPND REMARK SEQADV HETNAM REVDAT 5 2 1 LINK SITE ATOM REVDAT 4 13-JUL-11 2OK5 1 VERSN REVDAT 3 24-FEB-09 2OK5 1 VERSN REVDAT 2 29-MAY-07 2OK5 1 JRNL REVDAT 1 27-FEB-07 2OK5 0 JRNL AUTH F.J.MILDER,L.GOMES,A.SCHOUTEN,B.J.JANSSEN,E.G.HUIZINGA, JRNL AUTH 2 R.A.ROMIJN,W.HEMRIKA,A.ROOS,M.R.DAHA,P.GROS JRNL TITL FACTOR B STRUCTURE PROVIDES INSIGHTS INTO ACTIVATION OF THE JRNL TITL 2 CENTRAL PROTEASE OF THE COMPLEMENT SYSTEM. JRNL REF NAT.STRUCT.MOL.BIOL. V. 14 224 2007 JRNL REFN ISSN 1545-9993 JRNL PMID 17310251 JRNL DOI 10.1038/NSMB1210 REMARK 2 REMARK 2 RESOLUTION. 2.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.3.0008 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 60.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 40409 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : NULL REMARK 3 R VALUE (WORKING SET) : 0.195 REMARK 3 FREE R VALUE : 0.241 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2147 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.30 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.36 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2953 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.90 REMARK 3 BIN R VALUE (WORKING SET) : 0.2360 REMARK 3 BIN FREE R VALUE SET COUNT : 165 REMARK 3 BIN FREE R VALUE : 0.3110 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5606 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 217 REMARK 3 SOLVENT ATOMS : 295 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 33.68 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.09000 REMARK 3 B22 (A**2) : 1.09000 REMARK 3 B33 (A**2) : -1.64000 REMARK 3 B12 (A**2) : 0.55000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.283 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.219 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.159 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 12.269 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.941 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.914 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5956 ; 0.010 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 8059 ; 1.297 ; 1.991 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 706 ; 6.322 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 266 ;34.642 ;24.173 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 995 ;15.818 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 37 ;15.161 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 886 ; 0.087 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4389 ; 0.004 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 2377 ; 0.194 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 3970 ; 0.303 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 300 ; 0.151 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 31 ; 0.181 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 10 ; 0.121 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3632 ; 0.612 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 5701 ; 1.042 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2640 ; 1.579 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 2358 ; 2.535 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 10 A 76 REMARK 3 ORIGIN FOR THE GROUP (A): -52.3876 32.6703 24.3009 REMARK 3 T TENSOR REMARK 3 T11: -0.1111 T22: -0.0023 REMARK 3 T33: -0.1506 T12: -0.0239 REMARK 3 T13: 0.0024 T23: -0.0149 REMARK 3 L TENSOR REMARK 3 L11: 0.9488 L22: 4.9696 REMARK 3 L33: 5.3286 L12: -1.6274 REMARK 3 L13: -0.8796 L23: 2.4555 REMARK 3 S TENSOR REMARK 3 S11: -0.0627 S12: -0.1599 S13: -0.0785 REMARK 3 S21: 0.1438 S22: 0.1081 S23: 0.3243 REMARK 3 S31: -0.0280 S32: -0.1943 S33: -0.0455 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 77 A 201 REMARK 3 ORIGIN FOR THE GROUP (A): -62.5725 26.4864 -4.4831 REMARK 3 T TENSOR REMARK 3 T11: -0.0845 T22: -0.1188 REMARK 3 T33: -0.1582 T12: -0.0399 REMARK 3 T13: 0.0141 T23: -0.0242 REMARK 3 L TENSOR REMARK 3 L11: 1.1235 L22: 1.4440 REMARK 3 L33: 1.6664 L12: -0.2326 REMARK 3 L13: 0.9947 L23: -0.2858 REMARK 3 S TENSOR REMARK 3 S11: 0.0218 S12: -0.2501 S13: 0.0303 REMARK 3 S21: -0.0052 S22: -0.0485 S23: 0.1108 REMARK 3 S31: 0.0001 S32: -0.3456 S33: 0.0267 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 202 A 446 REMARK 3 ORIGIN FOR THE GROUP (A): -49.1794 52.8207 -2.6039 REMARK 3 T TENSOR REMARK 3 T11: -0.0240 T22: -0.1530 REMARK 3 T33: -0.0703 T12: -0.0278 REMARK 3 T13: -0.0222 T23: -0.0312 REMARK 3 L TENSOR REMARK 3 L11: 2.6289 L22: 2.4578 REMARK 3 L33: 1.4034 L12: -0.0450 REMARK 3 L13: -0.2638 L23: -0.1916 REMARK 3 S TENSOR REMARK 3 S11: -0.0005 S12: 0.0927 S13: 0.3305 REMARK 3 S21: -0.1089 S22: -0.0239 S23: 0.0508 REMARK 3 S31: -0.2275 S32: -0.0202 S33: 0.0244 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 447 A 742 REMARK 3 ORIGIN FOR THE GROUP (A): -24.0214 20.3570 6.3645 REMARK 3 T TENSOR REMARK 3 T11: -0.1461 T22: -0.0976 REMARK 3 T33: -0.1288 T12: -0.0831 REMARK 3 T13: 0.0372 T23: -0.0284 REMARK 3 L TENSOR REMARK 3 L11: 2.1022 L22: 1.5344 REMARK 3 L33: 2.3097 L12: -0.3781 REMARK 3 L13: 0.5202 L23: -0.3217 REMARK 3 S TENSOR REMARK 3 S11: -0.0192 S12: -0.1159 S13: -0.2296 REMARK 3 S21: -0.0487 S22: 0.0102 S23: 0.0057 REMARK 3 S31: 0.1870 S32: -0.1060 S33: 0.0090 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 2OK5 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 17-JAN-07. REMARK 100 THE DEPOSITION ID IS D_1000041236. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 25-FEB-06 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID14-4 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9395 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : CCP4 (SCALA) REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 42556 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.300 REMARK 200 RESOLUTION RANGE LOW (A) : 60.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 4.100 REMARK 200 R MERGE (I) : 0.10800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.42 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 4.10 REMARK 200 R MERGE FOR SHELL (I) : 0.56100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 1DLE AND 1Q0P WERE USED FOR MOLECULAR REPLACEMENT REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 55.98 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.79 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 12% PEG 1500, 0.02 M MALIC ACID, 0.04 REMARK 280 M MES, 0.04 M TRIS, PH 6.5, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+2/3 REMARK 290 6555 -X,-X+Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 50.37200 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 100.74400 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 100.74400 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 50.37200 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -9 REMARK 465 SER A -8 REMARK 465 HIS A -7 REMARK 465 HIS A -6 REMARK 465 HIS A -5 REMARK 465 HIS A -4 REMARK 465 HIS A -3 REMARK 465 HIS A -2 REMARK 465 GLY A -1 REMARK 465 SER A 0 REMARK 465 THR A 1 REMARK 465 PRO A 2 REMARK 465 TRP A 3 REMARK 465 SER A 4 REMARK 465 LEU A 5 REMARK 465 ALA A 6 REMARK 465 ARG A 7 REMARK 465 PRO A 8 REMARK 465 GLU A 218 REMARK 465 GLY A 219 REMARK 465 VAL A 220 REMARK 465 ASP A 221 REMARK 465 ALA A 222 REMARK 465 GLU A 223 REMARK 465 ASP A 224 REMARK 465 GLY A 225 REMARK 465 HIS A 226 REMARK 465 GLY A 227 REMARK 465 PRO A 228 REMARK 465 GLY A 229 REMARK 465 GLU A 230 REMARK 465 GLN A 231 REMARK 465 GLN A 232 REMARK 465 ASP A 321 REMARK 465 HIS A 322 REMARK 465 LYS A 323 REMARK 465 LEU A 324 REMARK 465 LYS A 325 REMARK 465 SER A 326 REMARK 465 PRO A 344 REMARK 465 ASP A 345 REMARK 465 ASP A 346 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN A 65 44.19 74.79 REMARK 500 SER A 99 2.14 85.34 REMARK 500 ASP A 254 -104.78 -120.16 REMARK 500 LYS A 281 75.76 -119.60 REMARK 500 ALA A 290 -106.72 -144.21 REMARK 500 ASN A 392 68.56 -158.11 REMARK 500 THR A 463 -166.00 -104.60 REMARK 500 LYS A 539 -6.28 85.86 REMARK 500 GLU A 612 45.61 70.72 REMARK 500 LYS A 613 -18.85 77.70 REMARK 500 VAL A 699 20.44 -144.91 REMARK 500 GLN A 703 -76.39 -40.42 REMARK 500 LYS A 704 31.98 -98.61 REMARK 500 ARG A 705 -38.94 -143.24 REMARK 500 GLN A 706 125.28 79.16 REMARK 500 LYS A 707 96.65 97.53 REMARK 500 LEU A 739 -154.80 -92.34 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 LYS A 431 ASP A 432 -143.47 REMARK 500 ASN A 537 GLY A 538 147.04 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2I6Q RELATED DB: PDB REMARK 900 COMPLEMENT COMPONENT C2A DBREF 2OK5 A 1 739 UNP P00751 CFAB_HUMAN 26 764 SEQADV 2OK5 GLY A -9 UNP P00751 CLONING ARTIFACT SEQADV 2OK5 SER A -8 UNP P00751 CLONING ARTIFACT SEQADV 2OK5 HIS A -7 UNP P00751 EXPRESSION TAG SEQADV 2OK5 HIS A -6 UNP P00751 EXPRESSION TAG SEQADV 2OK5 HIS A -5 UNP P00751 EXPRESSION TAG SEQADV 2OK5 HIS A -4 UNP P00751 EXPRESSION TAG SEQADV 2OK5 HIS A -3 UNP P00751 EXPRESSION TAG SEQADV 2OK5 HIS A -2 UNP P00751 EXPRESSION TAG SEQADV 2OK5 GLY A -1 UNP P00751 CLONING ARTIFACT SEQADV 2OK5 SER A 0 UNP P00751 CLONING ARTIFACT SEQADV 2OK5 ALA A 740 UNP P00751 CLONING ARTIFACT SEQADV 2OK5 ALA A 741 UNP P00751 CLONING ARTIFACT SEQADV 2OK5 ALA A 742 UNP P00751 CLONING ARTIFACT SEQRES 1 A 752 GLY SER HIS HIS HIS HIS HIS HIS GLY SER THR PRO TRP SEQRES 2 A 752 SER LEU ALA ARG PRO GLN GLY SER CYS SER LEU GLU GLY SEQRES 3 A 752 VAL GLU ILE LYS GLY GLY SER PHE ARG LEU LEU GLN GLU SEQRES 4 A 752 GLY GLN ALA LEU GLU TYR VAL CYS PRO SER GLY PHE TYR SEQRES 5 A 752 PRO TYR PRO VAL GLN THR ARG THR CYS ARG SER THR GLY SEQRES 6 A 752 SER TRP SER THR LEU LYS THR GLN ASP GLN LYS THR VAL SEQRES 7 A 752 ARG LYS ALA GLU CYS ARG ALA ILE HIS CYS PRO ARG PRO SEQRES 8 A 752 HIS ASP PHE GLU ASN GLY GLU TYR TRP PRO ARG SER PRO SEQRES 9 A 752 TYR TYR ASN VAL SER ASP GLU ILE SER PHE HIS CYS TYR SEQRES 10 A 752 ASP GLY TYR THR LEU ARG GLY SER ALA ASN ARG THR CYS SEQRES 11 A 752 GLN VAL ASN GLY ARG TRP SER GLY GLN THR ALA ILE CYS SEQRES 12 A 752 ASP ASN GLY ALA GLY TYR CYS SER ASN PRO GLY ILE PRO SEQRES 13 A 752 ILE GLY THR ARG LYS VAL GLY SER GLN TYR ARG LEU GLU SEQRES 14 A 752 ASP SER VAL THR TYR HIS CYS SER ARG GLY LEU THR LEU SEQRES 15 A 752 ARG GLY SER GLN ARG ARG THR CYS GLN GLU GLY GLY SER SEQRES 16 A 752 TRP SER GLY THR GLU PRO SER CYS GLN ASP SER PHE MET SEQRES 17 A 752 TYR ASP THR PRO GLN GLU VAL ALA GLU ALA PHE LEU SER SEQRES 18 A 752 SER LEU THR GLU THR ILE GLU GLY VAL ASP ALA GLU ASP SEQRES 19 A 752 GLY HIS GLY PRO GLY GLU GLN GLN LYS ARG LYS ILE VAL SEQRES 20 A 752 LEU ASP PRO SER GLY SER MET ASN ILE TYR LEU VAL LEU SEQRES 21 A 752 ASP GLY SER ASP SER ILE GLY ALA SER ASN PHE THR GLY SEQRES 22 A 752 ALA LYS LYS CYS LEU VAL ASN LEU ILE GLU LYS VAL ALA SEQRES 23 A 752 SER TYR GLY VAL LYS PRO ARG TYR GLY LEU VAL THR TYR SEQRES 24 A 752 ALA THR TYR PRO LYS ILE TRP VAL LYS VAL SER GLU ALA SEQRES 25 A 752 ASP SER SER ASN ALA ASP TRP VAL THR LYS GLN LEU ASN SEQRES 26 A 752 GLU ILE ASN TYR GLU ASP HIS LYS LEU LYS SER GLY THR SEQRES 27 A 752 ASN THR LYS LYS ALA LEU GLN ALA VAL TYR SER MET MET SEQRES 28 A 752 SER TRP PRO ASP ASP VAL PRO PRO GLU GLY TRP ASN ARG SEQRES 29 A 752 THR ARG HIS VAL ILE ILE LEU MET THR ASP GLY LEU HIS SEQRES 30 A 752 ASN MET GLY GLY ASP PRO ILE THR VAL ILE ASP GLU ILE SEQRES 31 A 752 ARG ASP LEU LEU TYR ILE GLY LYS ASP ARG LYS ASN PRO SEQRES 32 A 752 ARG GLU ASP TYR LEU ASP VAL TYR VAL PHE GLY VAL GLY SEQRES 33 A 752 PRO LEU VAL ASN GLN VAL ASN ILE ASN ALA LEU ALA SER SEQRES 34 A 752 LYS LYS ASP ASN GLU GLN HIS VAL PHE LYS VAL LYS ASP SEQRES 35 A 752 MET GLU ASN LEU GLU ASP VAL PHE TYR GLN MET ILE ASP SEQRES 36 A 752 GLU SER GLN SER LEU SER LEU CYS GLY MET VAL TRP GLU SEQRES 37 A 752 HIS ARG LYS GLY THR ASP TYR HIS LYS GLN PRO TRP GLN SEQRES 38 A 752 ALA LYS ILE SER VAL ILE ARG PRO SER LYS GLY HIS GLU SEQRES 39 A 752 SER CYS MET GLY ALA VAL VAL SER GLU TYR PHE VAL LEU SEQRES 40 A 752 THR ALA ALA HIS CYS PHE THR VAL ASP ASP LYS GLU HIS SEQRES 41 A 752 SER ILE LYS VAL SER VAL GLY GLY GLU LYS ARG ASP LEU SEQRES 42 A 752 GLU ILE GLU VAL VAL LEU PHE HIS PRO ASN TYR ASN ILE SEQRES 43 A 752 ASN GLY LYS LYS GLU ALA GLY ILE PRO GLU PHE TYR ASP SEQRES 44 A 752 TYR ASP VAL ALA LEU ILE LYS LEU LYS ASN LYS LEU LYS SEQRES 45 A 752 TYR GLY GLN THR ILE ARG PRO ILE CYS LEU PRO CYS THR SEQRES 46 A 752 GLU GLY THR THR ARG ALA LEU ARG LEU PRO PRO THR THR SEQRES 47 A 752 THR CYS GLN GLN GLN LYS GLU GLU LEU LEU PRO ALA GLN SEQRES 48 A 752 ASP ILE LYS ALA LEU PHE VAL SER GLU GLU GLU LYS LYS SEQRES 49 A 752 LEU THR ARG LYS GLU VAL TYR ILE LYS ASN GLY ASP LYS SEQRES 50 A 752 LYS GLY SER CYS GLU ARG ASP ALA GLN TYR ALA PRO GLY SEQRES 51 A 752 TYR ASP LYS VAL LYS ASP ILE SER GLU VAL VAL THR PRO SEQRES 52 A 752 ARG PHE LEU CYS THR GLY GLY VAL SER PRO TYR ALA ASP SEQRES 53 A 752 PRO ASN THR CYS ARG GLY ASP SER GLY GLY PRO LEU ILE SEQRES 54 A 752 VAL HIS LYS ARG SER ARG PHE ILE GLN VAL GLY VAL ILE SEQRES 55 A 752 SER TRP GLY VAL VAL ASP VAL CYS LYS ASN GLN LYS ARG SEQRES 56 A 752 GLN LYS GLN VAL PRO ALA HIS ALA ARG ASP PHE HIS ILE SEQRES 57 A 752 ASN LEU PHE GLN VAL LEU PRO TRP LEU LYS GLU LYS LEU SEQRES 58 A 752 GLN ASP GLU ASP LEU GLY PHE LEU ALA ALA ALA MODRES 2OK5 ASN A 97 ASN GLYCOSYLATION SITE MODRES 2OK5 ASN A 117 ASN GLYCOSYLATION SITE MODRES 2OK5 ASN A 260 ASN GLYCOSYLATION SITE MODRES 2OK5 ASN A 353 ASN GLYCOSYLATION SITE HET NAG B 1 14 HET NAG B 2 14 HET BMA B 3 11 HET MAN B 4 11 HET MAN B 5 11 HET MAN B 6 11 HET MAN B 7 11 HET NAG C 1 14 HET NAG C 2 14 HET NAG A1260 14 HET NAG A1353 14 HET GOL A1354 6 HET GOL A1355 6 HET GOL A1356 6 HET GOL A1357 6 HET GOL A1358 6 HET GOL A1359 6 HET GOL A1360 6 HET GOL A1361 6 HET GOL A1362 6 HET GOL A1363 6 HET GOL A1364 6 HET GOL A1365 6 HET GOL A1366 6 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM BMA BETA-D-MANNOPYRANOSE HETNAM MAN ALPHA-D-MANNOPYRANOSE HETNAM GOL GLYCEROL HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE HETSYN BMA BETA-D-MANNOSE; D-MANNOSE; MANNOSE HETSYN MAN ALPHA-D-MANNOSE; D-MANNOSE; MANNOSE HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 NAG 6(C8 H15 N O6) FORMUL 2 BMA C6 H12 O6 FORMUL 2 MAN 4(C6 H12 O6) FORMUL 6 GOL 13(C3 H8 O3) FORMUL 19 HOH *295(H2 O) HELIX 1 1 GLN A 28 GLY A 30 5 3 HELIX 2 2 THR A 201 THR A 214 1 14 HELIX 3 3 GLY A 257 SER A 277 1 21 HELIX 4 4 ASN A 306 GLU A 316 1 11 HELIX 5 5 ASN A 329 SER A 342 1 14 HELIX 6 6 GLY A 351 ASN A 353 5 3 HELIX 7 7 PRO A 373 LEU A 384 1 12 HELIX 8 8 ARG A 394 ASP A 396 5 3 HELIX 9 9 ASN A 410 ALA A 418 1 9 HELIX 10 10 ASP A 432 GLU A 446 1 15 HELIX 11 11 THR A 463 GLN A 468 1 6 HELIX 12 12 ALA A 499 PHE A 503 5 5 HELIX 13 13 LYS A 508 HIS A 510 5 3 HELIX 14 14 THR A 575 LEU A 582 1 8 HELIX 15 15 THR A 589 LEU A 598 1 10 HELIX 16 16 LYS A 627 ASP A 634 1 8 HELIX 17 17 ALA A 635 ALA A 638 5 4 HELIX 18 18 ASP A 646 VAL A 650 5 5 HELIX 19 19 CYS A 670 SER A 674 5 5 HELIX 20 20 VAL A 699 GLN A 703 5 5 HELIX 21 21 VAL A 723 LEU A 731 1 9 SHEET 1 A 3 SER A 23 LEU A 27 0 SHEET 2 A 3 ALA A 32 VAL A 36 -1 O VAL A 36 N SER A 23 SHEET 3 A 3 THR A 48 THR A 50 -1 O ARG A 49 N LEU A 33 SHEET 1 B 2 PHE A 41 TYR A 44 0 SHEET 2 B 2 GLU A 72 ALA A 75 -1 O GLU A 72 N TYR A 44 SHEET 1 C 2 HIS A 77 CYS A 78 0 SHEET 2 C 2 TYR A 96 ASN A 97 -1 O TYR A 96 N CYS A 78 SHEET 1 D 3 GLY A 87 TRP A 90 0 SHEET 2 D 3 GLU A 101 CYS A 106 -1 O HIS A 105 N GLU A 88 SHEET 3 D 3 ASN A 117 THR A 119 -1 O ARG A 118 N ILE A 102 SHEET 1 E 2 THR A 111 ARG A 113 0 SHEET 2 E 2 ILE A 132 ASP A 134 -1 O ASP A 134 N THR A 111 SHEET 1 F 3 ARG A 150 VAL A 152 0 SHEET 2 F 3 SER A 161 HIS A 165 -1 O THR A 163 N VAL A 152 SHEET 3 F 3 ARG A 177 THR A 179 -1 O ARG A 178 N VAL A 162 SHEET 1 G 2 THR A 171 ARG A 173 0 SHEET 2 G 2 SER A 192 GLN A 194 -1 O GLN A 194 N THR A 171 SHEET 1 H 6 PRO A 293 VAL A 297 0 SHEET 2 H 6 ARG A 283 TYR A 289 -1 N THR A 288 O LYS A 294 SHEET 3 H 6 SER A 243 ASP A 251 1 N LEU A 250 O VAL A 287 SHEET 4 H 6 THR A 355 THR A 363 1 O ILE A 360 N TYR A 247 SHEET 5 H 6 LEU A 398 VAL A 405 1 O TYR A 401 N ILE A 359 SHEET 6 H 6 VAL A 427 VAL A 430 1 O PHE A 428 N GLY A 404 SHEET 1 I 6 ILE A 512 VAL A 516 0 SHEET 2 I 6 GLN A 471 VAL A 476 -1 N SER A 475 O LYS A 513 SHEET 3 I 6 GLU A 484 VAL A 490 -1 O CYS A 486 N ILE A 474 SHEET 4 I 6 PHE A 495 THR A 498 -1 O LEU A 497 N ALA A 489 SHEET 5 I 6 ALA A 553 LEU A 557 -1 O ILE A 555 N VAL A 496 SHEET 6 I 6 ILE A 525 PHE A 530 -1 N GLU A 526 O LYS A 556 SHEET 1 J 6 LYS A 614 LYS A 623 0 SHEET 2 J 6 ASP A 602 GLU A 611 -1 N ALA A 605 O VAL A 620 SHEET 3 J 6 PRO A 677 LYS A 682 -1 O ILE A 679 N LEU A 606 SHEET 4 J 6 ARG A 685 GLY A 695 -1 O ILE A 687 N VAL A 680 SHEET 5 J 6 ARG A 714 ASN A 719 -1 O PHE A 716 N TRP A 694 SHEET 6 J 6 PHE A 655 GLY A 659 -1 N LEU A 656 O HIS A 717 SSBOND 1 CYS A 12 CYS A 51 1555 1555 2.06 SSBOND 2 CYS A 37 CYS A 73 1555 1555 2.05 SSBOND 3 CYS A 78 CYS A 120 1555 1555 2.05 SSBOND 4 CYS A 106 CYS A 133 1555 1555 2.08 SSBOND 5 CYS A 140 CYS A 180 1555 1555 2.04 SSBOND 6 CYS A 166 CYS A 193 1555 1555 2.07 SSBOND 7 CYS A 453 CYS A 571 1555 1555 2.09 SSBOND 8 CYS A 486 CYS A 502 1555 1555 2.06 SSBOND 9 CYS A 574 CYS A 590 1555 1555 2.01 SSBOND 10 CYS A 631 CYS A 657 1555 1555 2.04 SSBOND 11 CYS A 670 CYS A 700 1555 1555 2.04 LINK ND2 ASN A 97 C1 NAG B 1 1555 1555 1.44 LINK ND2 ASN A 117 C1 NAG C 1 1555 1555 1.45 LINK ND2 ASN A 260 C1 NAG A1260 1555 1555 1.44 LINK ND2 ASN A 353 C1 NAG A1353 1555 1555 1.45 LINK O4 NAG B 1 C1 NAG B 2 1555 1555 1.43 LINK O4 NAG B 2 C1 BMA B 3 1555 1555 1.45 LINK O6 BMA B 3 C1 MAN B 4 1555 1555 1.43 LINK O3 BMA B 3 C1 MAN B 7 1555 1555 1.45 LINK O3 MAN B 4 C1 MAN B 5 1555 1555 1.44 LINK O6 MAN B 4 C1 MAN B 6 1555 1555 1.44 LINK O4 NAG C 1 C1 NAG C 2 1555 1555 1.46 CISPEP 1 TYR A 44 PRO A 45 0 -2.45 CISPEP 2 TRP A 90 PRO A 91 0 -7.19 CISPEP 3 TYR A 319 GLU A 320 0 4.50 CISPEP 4 GLY A 538 LYS A 539 0 -9.45 CISPEP 5 SER A 662 PRO A 663 0 3.95 CISPEP 6 GLN A 706 LYS A 707 0 6.51 CISPEP 7 LYS A 707 GLN A 708 0 -15.48 CRYST1 104.031 104.031 151.116 90.00 90.00 120.00 P 31 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009613 0.005550 0.000000 0.00000 SCALE2 0.000000 0.011100 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006617 0.00000