HEADER HYDROLASE 16-JAN-07 2OKB TITLE HIGH RESOLUTION CRYSTAL STRUCTURES OF VACCINIA VIRUS DUTPASE COMPND MOL_ID: 1; COMPND 2 MOLECULE: DEOXYURIDINE 5'-TRIPHOSPHATE NUCLEOTIDOHYDROLASE; COMPND 3 CHAIN: A, B, C; COMPND 4 SYNONYM: DUTPASE, DUTP PYROPHOSPHATASE; COMPND 5 EC: 3.6.1.23; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: VACCINIA VIRUS; SOURCE 3 ORGANISM_TAXID: 10245; SOURCE 4 GENE: DUT; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)PLYSS; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET15B KEYWDS FOLD, JELLY-ROLL, SUPERFAMILY, DUTPASE-LIKE, FORMS TIGHT TRIMER KEYWDS 2 THROUGH AN ADDITIONAL BETA-SHEET IN EACH SUBUNIT, SUBUNIT BETA- KEYWDS 3 SHEETS ARE ORTHOGONALLY PACKED AROUND THE THREE-FOLD AXIS, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR N.SCHORMANN,D.CHATTOPADHYAY REVDAT 5 30-AUG-23 2OKB 1 REMARK REVDAT 4 20-OCT-21 2OKB 1 REMARK SEQADV REVDAT 3 13-JUL-11 2OKB 1 VERSN REVDAT 2 24-FEB-09 2OKB 1 VERSN REVDAT 1 01-MAY-07 2OKB 0 JRNL AUTH A.SAMAL,N.SCHORMANN,W.J.COOK,L.J.DELUCAS,D.CHATTOPADHYAY JRNL TITL STRUCTURES OF VACCINIA VIRUS DUTPASE AND ITS NUCLEOTIDE JRNL TITL 2 COMPLEXES. JRNL REF ACTA CRYSTALLOGR.,SECT.D V. 63 571 2007 JRNL REFN ISSN 0907-4449 JRNL PMID 17452782 JRNL DOI 10.1107/S0907444907007871 REMARK 2 REMARK 2 RESOLUTION. 2.15 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.3.0011 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.15 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 18.13 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.4 REMARK 3 NUMBER OF REFLECTIONS : 19126 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.212 REMARK 3 R VALUE (WORKING SET) : 0.210 REMARK 3 FREE R VALUE : 0.257 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1034 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.15 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.21 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1277 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 90.60 REMARK 3 BIN R VALUE (WORKING SET) : 0.2240 REMARK 3 BIN FREE R VALUE SET COUNT : 73 REMARK 3 BIN FREE R VALUE : 0.2910 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2643 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 29 REMARK 3 SOLVENT ATOMS : 236 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 27.00 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 30.84 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.03000 REMARK 3 B22 (A**2) : 0.03000 REMARK 3 B33 (A**2) : -0.04000 REMARK 3 B12 (A**2) : 0.01000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.290 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.221 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.144 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 9.681 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.932 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.893 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2740 ; 0.007 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3701 ; 0.902 ; 1.988 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 340 ; 5.671 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 122 ;27.801 ;23.115 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 462 ;11.892 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 24 ;13.583 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 389 ; 0.058 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2103 ; 0.002 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1126 ; 0.161 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1826 ; 0.309 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 247 ; 0.101 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 31 ; 0.146 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 14 ; 0.116 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1746 ; 0.310 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2728 ; 0.548 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1143 ; 0.697 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 973 ; 1.101 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 11 A 123 REMARK 3 ORIGIN FOR THE GROUP (A): 16.4290 66.8090 16.3600 REMARK 3 T TENSOR REMARK 3 T11: -0.1269 T22: -0.1400 REMARK 3 T33: -0.0280 T12: -0.0212 REMARK 3 T13: 0.0435 T23: -0.0153 REMARK 3 L TENSOR REMARK 3 L11: 2.9326 L22: 1.8220 REMARK 3 L33: 2.0167 L12: -0.5245 REMARK 3 L13: 0.0127 L23: -0.0169 REMARK 3 S TENSOR REMARK 3 S11: 0.0612 S12: 0.0253 S13: -0.0865 REMARK 3 S21: 0.2484 S22: 0.0401 S23: -0.1929 REMARK 3 S31: -0.2692 S32: 0.0442 S33: 0.0966 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 11 B 123 REMARK 3 ORIGIN FOR THE GROUP (A): 28.2340 80.9290 29.7470 REMARK 3 T TENSOR REMARK 3 T11: -0.1124 T22: -0.1355 REMARK 3 T33: 0.1278 T12: -0.0498 REMARK 3 T13: 0.0322 T23: -0.0627 REMARK 3 L TENSOR REMARK 3 L11: 1.8348 L22: 4.2736 REMARK 3 L33: 4.1605 L12: -0.5817 REMARK 3 L13: -0.7357 L23: 2.0740 REMARK 3 S TENSOR REMARK 3 S11: 0.0345 S12: 0.1260 S13: -0.1606 REMARK 3 S21: -0.0202 S22: 0.1766 S23: -0.5764 REMARK 3 S31: -0.1446 S32: -0.3513 S33: 0.3633 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 11 C 123 REMARK 3 ORIGIN FOR THE GROUP (A): 25.8570 58.9590 35.6350 REMARK 3 T TENSOR REMARK 3 T11: -0.1195 T22: -0.1185 REMARK 3 T33: 0.0369 T12: -0.0043 REMARK 3 T13: -0.0379 T23: -0.0164 REMARK 3 L TENSOR REMARK 3 L11: 3.9119 L22: 3.4421 REMARK 3 L33: 2.6105 L12: 0.0417 REMARK 3 L13: -0.1608 L23: -0.5304 REMARK 3 S TENSOR REMARK 3 S11: -0.0142 S12: -0.0031 S13: 0.0172 REMARK 3 S21: -0.2489 S22: -0.1744 S23: -0.4230 REMARK 3 S31: 0.1542 S32: 0.1487 S33: 0.2438 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 2OKB COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 19-JAN-07. REMARK 100 THE DEPOSITION ID IS D_1000041242. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 05-JUN-05 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 4.20 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU RU200 REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : GRAPHITE REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS IV REMARK 200 INTENSITY-INTEGRATION SOFTWARE : D*TREK REMARK 200 DATA SCALING SOFTWARE : D*TREK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 20238 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.150 REMARK 200 RESOLUTION RANGE LOW (A) : 49.700 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.6 REMARK 200 DATA REDUNDANCY : 6.200 REMARK 200 R MERGE (I) : 0.03300 REMARK 200 R SYM (I) : 0.03300 REMARK 200 FOR THE DATA SET : 29.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.15 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.23 REMARK 200 COMPLETENESS FOR SHELL (%) : 92.1 REMARK 200 DATA REDUNDANCY IN SHELL : 2.60 REMARK 200 R MERGE FOR SHELL (I) : 0.14400 REMARK 200 R SYM FOR SHELL (I) : 0.14400 REMARK 200 FOR SHELL : 6.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 1Q5U REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 41.05 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.09 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 12% PEG1000, 0.1M LITHIUM SULFATE, REMARK 280 0.1M PHOSPHATE/CITRATE BUFFER, PH 4.2, VAPOR DIFFUSION, HANGING REMARK 280 DROP, TEMPERATURE 298K, PH 4.20 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 63 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/2 REMARK 290 6555 X-Y,X,Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 29.64500 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 29.64500 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 29.64500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE ASYMMETRIC UNIT CONTAINS A HOMO-TRIMER WITH MONOMERS REMARK 300 RELATED BY NON-CRYSTALLOGRAPHIC SYMMETRY. THIS HOMO-TRIMER REMARK 300 CONSTITUTES THE BIOLOGICAL ASSEMBLY. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6860 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 14770 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -55.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: NONAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 24070 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 40840 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -194.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 52.63000 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 91.15783 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 -52.63000 REMARK 350 BIOMT2 3 -0.866025 -0.500000 0.000000 91.15783 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLU A 124 REMARK 465 LEU A 125 REMARK 465 GLU A 126 REMARK 465 GLU A 127 REMARK 465 VAL A 128 REMARK 465 GLN A 129 REMARK 465 SER A 130 REMARK 465 LEU A 131 REMARK 465 ASP A 132 REMARK 465 SER A 133 REMARK 465 THR A 134 REMARK 465 ASN A 135 REMARK 465 ARG A 136 REMARK 465 GLY A 137 REMARK 465 ASP A 138 REMARK 465 GLN A 139 REMARK 465 GLY A 140 REMARK 465 PHE A 141 REMARK 465 GLY A 142 REMARK 465 SER A 143 REMARK 465 THR A 144 REMARK 465 GLY A 145 REMARK 465 LEU A 146 REMARK 465 ARG A 147 REMARK 465 GLU B 124 REMARK 465 LEU B 125 REMARK 465 GLU B 126 REMARK 465 GLU B 127 REMARK 465 VAL B 128 REMARK 465 GLN B 129 REMARK 465 SER B 130 REMARK 465 LEU B 131 REMARK 465 ASP B 132 REMARK 465 SER B 133 REMARK 465 THR B 134 REMARK 465 ASN B 135 REMARK 465 ARG B 136 REMARK 465 GLY B 137 REMARK 465 ASP B 138 REMARK 465 GLN B 139 REMARK 465 GLY B 140 REMARK 465 PHE B 141 REMARK 465 GLY B 142 REMARK 465 SER B 143 REMARK 465 THR B 144 REMARK 465 GLY B 145 REMARK 465 LEU B 146 REMARK 465 ARG B 147 REMARK 465 GLU C 124 REMARK 465 LEU C 125 REMARK 465 GLU C 126 REMARK 465 GLU C 127 REMARK 465 VAL C 128 REMARK 465 GLN C 129 REMARK 465 SER C 130 REMARK 465 LEU C 131 REMARK 465 ASP C 132 REMARK 465 SER C 133 REMARK 465 THR C 134 REMARK 465 ASN C 135 REMARK 465 ARG C 136 REMARK 465 GLY C 137 REMARK 465 ASP C 138 REMARK 465 GLN C 139 REMARK 465 GLY C 140 REMARK 465 PHE C 141 REMARK 465 GLY C 142 REMARK 465 SER C 143 REMARK 465 THR C 144 REMARK 465 GLY C 145 REMARK 465 LEU C 146 REMARK 465 ARG C 147 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 85 -159.80 -141.63 REMARK 500 PRO B 27 -8.35 -59.83 REMARK 500 ASP B 85 -157.79 -134.37 REMARK 500 GLN C 25 -86.04 -65.05 REMARK 500 ASP C 85 -157.93 -136.37 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 1201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 1202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 C 1203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL B 1401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 1402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 1301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 1302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 1303 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1Q5U RELATED DB: PDB REMARK 900 HUMAN DUTPASE REMARK 900 RELATED ID: 2OKD RELATED DB: PDB REMARK 900 HIGH RESOLUTION CRYSTAL STRUCTURES OF VACCINIA VIRUS DUTPASE REMARK 900 RELATED ID: 2OKE RELATED DB: PDB REMARK 900 HIGH RESOLUTION CRYSTAL STRUCTURES OF VACCINIA VIRUS DUTPASE REMARK 900 RELATED ID: 2OL0 RELATED DB: PDB REMARK 900 HIGH RESOLUTION CRYSTAL STRUCTURES OF VACCINIA VIRUS DUTPASE REMARK 900 RELATED ID: 2OL1 RELATED DB: PDB REMARK 900 HIGH RESOLUTION CRYSTAL STRUCTURES OF VACCINIA VIRUS DUTPASE DBREF 2OKB A 12 147 GB 29692147 AAO89320 12 147 DBREF 2OKB B 12 147 GB 29692147 AAO89320 12 147 DBREF 2OKB C 12 147 GB 29692147 AAO89320 12 147 SEQADV 2OKB MET A 11 UNP 29692147 INITIATING METHIONINE SEQADV 2OKB GLY A 28 UNP 29692147 PHE 28 ENGINEERED MUTATION SEQADV 2OKB MET B 11 UNP 29692147 INITIATING METHIONINE SEQADV 2OKB GLY B 28 UNP 29692147 PHE 28 ENGINEERED MUTATION SEQADV 2OKB MET C 11 UNP 29692147 INITIATING METHIONINE SEQADV 2OKB GLY C 28 UNP 29692147 PHE 28 ENGINEERED MUTATION SEQRES 1 A 137 MET PHE VAL LYS GLU THR ASN ARG ALA LYS SER PRO THR SEQRES 2 A 137 ARG GLN SER PRO GLY ALA ALA GLY TYR ASP LEU TYR SER SEQRES 3 A 137 ALA TYR ASP TYR THR ILE PRO PRO GLY GLU ARG GLN LEU SEQRES 4 A 137 ILE LYS THR ASP ILE SER MET SER MET PRO LYS PHE CYS SEQRES 5 A 137 TYR GLY ARG ILE ALA PRO ARG SER GLY LEU SER LEU LYS SEQRES 6 A 137 GLY ILE ASP ILE GLY GLY GLY VAL ILE ASP GLU ASP TYR SEQRES 7 A 137 ARG GLY ASN ILE GLY VAL ILE LEU ILE ASN ASN GLY LYS SEQRES 8 A 137 CYS THR PHE ASN VAL ASN THR GLY ASP ARG ILE ALA GLN SEQRES 9 A 137 LEU ILE TYR GLN ARG ILE TYR TYR PRO GLU LEU GLU GLU SEQRES 10 A 137 VAL GLN SER LEU ASP SER THR ASN ARG GLY ASP GLN GLY SEQRES 11 A 137 PHE GLY SER THR GLY LEU ARG SEQRES 1 B 137 MET PHE VAL LYS GLU THR ASN ARG ALA LYS SER PRO THR SEQRES 2 B 137 ARG GLN SER PRO GLY ALA ALA GLY TYR ASP LEU TYR SER SEQRES 3 B 137 ALA TYR ASP TYR THR ILE PRO PRO GLY GLU ARG GLN LEU SEQRES 4 B 137 ILE LYS THR ASP ILE SER MET SER MET PRO LYS PHE CYS SEQRES 5 B 137 TYR GLY ARG ILE ALA PRO ARG SER GLY LEU SER LEU LYS SEQRES 6 B 137 GLY ILE ASP ILE GLY GLY GLY VAL ILE ASP GLU ASP TYR SEQRES 7 B 137 ARG GLY ASN ILE GLY VAL ILE LEU ILE ASN ASN GLY LYS SEQRES 8 B 137 CYS THR PHE ASN VAL ASN THR GLY ASP ARG ILE ALA GLN SEQRES 9 B 137 LEU ILE TYR GLN ARG ILE TYR TYR PRO GLU LEU GLU GLU SEQRES 10 B 137 VAL GLN SER LEU ASP SER THR ASN ARG GLY ASP GLN GLY SEQRES 11 B 137 PHE GLY SER THR GLY LEU ARG SEQRES 1 C 137 MET PHE VAL LYS GLU THR ASN ARG ALA LYS SER PRO THR SEQRES 2 C 137 ARG GLN SER PRO GLY ALA ALA GLY TYR ASP LEU TYR SER SEQRES 3 C 137 ALA TYR ASP TYR THR ILE PRO PRO GLY GLU ARG GLN LEU SEQRES 4 C 137 ILE LYS THR ASP ILE SER MET SER MET PRO LYS PHE CYS SEQRES 5 C 137 TYR GLY ARG ILE ALA PRO ARG SER GLY LEU SER LEU LYS SEQRES 6 C 137 GLY ILE ASP ILE GLY GLY GLY VAL ILE ASP GLU ASP TYR SEQRES 7 C 137 ARG GLY ASN ILE GLY VAL ILE LEU ILE ASN ASN GLY LYS SEQRES 8 C 137 CYS THR PHE ASN VAL ASN THR GLY ASP ARG ILE ALA GLN SEQRES 9 C 137 LEU ILE TYR GLN ARG ILE TYR TYR PRO GLU LEU GLU GLU SEQRES 10 C 137 VAL GLN SER LEU ASP SER THR ASN ARG GLY ASP GLN GLY SEQRES 11 C 137 PHE GLY SER THR GLY LEU ARG HET SO4 A1201 5 HET CL A1402 1 HET EDO A1302 4 HET SO4 B1202 5 HET CL B1401 1 HET EDO B1301 4 HET EDO B1303 4 HET SO4 C1203 5 HETNAM SO4 SULFATE ION HETNAM CL CHLORIDE ION HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 4 SO4 3(O4 S 2-) FORMUL 5 CL 2(CL 1-) FORMUL 6 EDO 3(C2 H6 O2) FORMUL 12 HOH *236(H2 O) HELIX 1 1 ARG A 69 LEU A 74 1 6 HELIX 2 2 ARG B 69 LEU B 74 1 6 HELIX 3 3 ARG C 69 LEU C 74 1 6 SHEET 1 A 4 PHE A 12 LYS A 14 0 SHEET 2 A 4 GLU A 46 SER A 57 -1 O SER A 55 N VAL A 13 SHEET 3 A 4 ARG A 89 ASN A 98 -1 O VAL A 94 N ILE A 50 SHEET 4 A 4 ILE A 77 GLY A 80 -1 N ASP A 78 O ILE A 97 SHEET 1 B 4 TYR A 32 TYR A 35 0 SHEET 2 B 4 ARG A 111 ARG A 119 -1 O LEU A 115 N TYR A 32 SHEET 3 B 4 CYS A 62 ALA A 67 -1 N ALA A 67 O GLN A 114 SHEET 4 B 4 VAL A 83 ILE A 84 -1 O ILE A 84 N GLY A 64 SHEET 1 C 2 TYR A 40 ILE A 42 0 SHEET 2 C 2 PHE A 104 VAL A 106 -1 O VAL A 106 N TYR A 40 SHEET 1 D 4 PHE B 12 LYS B 14 0 SHEET 2 D 4 ARG B 47 SER B 57 -1 O SER B 55 N VAL B 13 SHEET 3 D 4 ARG B 89 ASN B 98 -1 O VAL B 94 N ILE B 50 SHEET 4 D 4 ILE B 77 GLY B 80 -1 N ASP B 78 O ILE B 97 SHEET 1 E 4 TYR B 32 TYR B 35 0 SHEET 2 E 4 ARG B 111 ARG B 119 -1 O ALA B 113 N LEU B 34 SHEET 3 E 4 CYS B 62 ALA B 67 -1 N ALA B 67 O GLN B 114 SHEET 4 E 4 VAL B 83 ILE B 84 -1 O ILE B 84 N GLY B 64 SHEET 1 F 2 TYR B 40 ILE B 42 0 SHEET 2 F 2 PHE B 104 VAL B 106 -1 O PHE B 104 N ILE B 42 SHEET 1 G 4 PHE C 12 LYS C 14 0 SHEET 2 G 4 GLU C 46 SER C 57 -1 O SER C 55 N VAL C 13 SHEET 3 G 4 ARG C 89 ASN C 98 -1 O VAL C 94 N ILE C 50 SHEET 4 G 4 ILE C 77 GLY C 80 -1 N ASP C 78 O ILE C 97 SHEET 1 H 4 TYR C 32 TYR C 35 0 SHEET 2 H 4 ARG C 111 ARG C 119 -1 O LEU C 115 N TYR C 32 SHEET 3 H 4 CYS C 62 ALA C 67 -1 N ALA C 67 O GLN C 114 SHEET 4 H 4 VAL C 83 ILE C 84 -1 O ILE C 84 N GLY C 64 SHEET 1 I 2 TYR C 40 ILE C 42 0 SHEET 2 I 2 PHE C 104 VAL C 106 -1 O PHE C 104 N ILE C 42 SITE 1 AC1 6 ARG A 69 SER A 70 GLY A 71 ARG A 111 SITE 2 AC1 6 EDO A1302 HOH A1415 SITE 1 AC2 5 ARG B 69 SER B 70 GLY B 71 ARG B 111 SITE 2 AC2 5 HOH B1413 SITE 1 AC3 8 CYS A 102 THR A 103 ARG C 69 SER C 70 SITE 2 AC3 8 GLY C 71 ARG C 111 HOH C1210 HOH C1274 SITE 1 AC4 2 ARG B 65 ARG C 65 SITE 1 AC5 2 ARG A 111 HOH A1488 SITE 1 AC6 6 SER A 70 ILE B 66 GLY B 81 GLY B 82 SITE 2 AC6 6 GLY B 93 HOH B1404 SITE 1 AC7 8 ASP A 33 ARG A 69 ARG A 111 ALA A 113 SITE 2 AC7 8 GLN A 114 SO4 A1201 HOH A1415 HOH A1438 SITE 1 AC8 7 ASN A 99 GLY B 45 GLU B 46 ARG B 47 SITE 2 AC8 7 ILE B 97 ASN B 98 ASN B 99 CRYST1 105.260 105.260 59.290 90.00 90.00 120.00 P 63 18 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009500 0.005485 0.000000 0.00000 SCALE2 0.000000 0.010970 0.000000 0.00000 SCALE3 0.000000 0.000000 0.016866 0.00000