HEADER LYASE 17-JAN-07 2OKK TITLE THE X-RAY CRYSTAL STRUCTURE OF THE 65KDA ISOFORM OF GLUTAMIC ACID TITLE 2 DECARBOXYLASE (GAD65) COMPND MOL_ID: 1; COMPND 2 MOLECULE: GLUTAMATE DECARBOXYLASE 2; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: RESIDUES 88-584; COMPND 5 SYNONYM: GLUTAMATE DECARBOXYLASE 65 KDA ISOFORM, GAD-65, 65 KDA COMPND 6 GLUTAMIC ACID DECARBOXYLASE; COMPND 7 EC: 4.1.1.15; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: GAD2, GAD65; SOURCE 6 EXPRESSION_SYSTEM: SACCHAROMYCES CEREVISIAE; SOURCE 7 EXPRESSION_SYSTEM_COMMON: BAKER'S YEAST; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 4932; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: YRD-15; SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PRJ KEYWDS PLP-DEPENDENT DECARBOXYLASE, LYASE EXPDTA X-RAY DIFFRACTION AUTHOR A.M.BUCKLE,G.FENALTI,R.H.P.LAW,J.C.WHISSTOCK REVDAT 7 15-NOV-23 2OKK 1 ATOM REVDAT 6 30-AUG-23 2OKK 1 REMARK LINK REVDAT 5 13-JUL-11 2OKK 1 VERSN REVDAT 4 22-SEP-09 2OKK 1 HETATM REVDAT 3 24-FEB-09 2OKK 1 VERSN REVDAT 2 24-APR-07 2OKK 1 JRNL REVDAT 1 27-MAR-07 2OKK 0 JRNL AUTH G.FENALTI,R.H.LAW,A.M.BUCKLE,C.LANGENDORF,K.TUCK,C.J.ROSADO, JRNL AUTH 2 N.G.FAUX,K.MAHMOOD,C.S.HAMPE,J.P.BANGA,M.WILCE, JRNL AUTH 3 J.SCHMIDBERGER,J.ROSSJOHN,O.EL-KABBANI,R.N.PIKE,A.I.SMITH, JRNL AUTH 4 I.R.MACKAY,M.J.ROWLEY,J.C.WHISSTOCK JRNL TITL GABA PRODUCTION BY GLUTAMIC ACID DECARBOXYLASE IS REGULATED JRNL TITL 2 BY A DYNAMIC CATALYTIC LOOP. JRNL REF NAT.STRUCT.MOL.BIOL. V. 14 280 2007 JRNL REFN ISSN 1545-9993 JRNL PMID 17384644 JRNL DOI 10.1038/NSMB1228 REMARK 2 REMARK 2 RESOLUTION. 2.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 37.19 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.9 REMARK 3 NUMBER OF REFLECTIONS : 20648 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.200 REMARK 3 R VALUE (WORKING SET) : 0.196 REMARK 3 FREE R VALUE : 0.256 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.200 REMARK 3 FREE R VALUE TEST SET COUNT : 1077 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.30 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.36 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1389 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 94.85 REMARK 3 BIN R VALUE (WORKING SET) : 0.2470 REMARK 3 BIN FREE R VALUE SET COUNT : 66 REMARK 3 BIN FREE R VALUE : 0.3540 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3770 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 20 REMARK 3 SOLVENT ATOMS : 92 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 51.40 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.32000 REMARK 3 B22 (A**2) : 0.94000 REMARK 3 B33 (A**2) : 0.37000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.454 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.269 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.203 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 14.110 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.944 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.909 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3877 ; 0.009 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5246 ; 1.352 ; 1.965 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 480 ; 5.799 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 156 ;37.868 ;24.038 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 658 ;17.640 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 16 ;17.402 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 578 ; 0.129 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2879 ; 0.004 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1811 ; 0.203 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 2611 ; 0.303 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 165 ; 0.143 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 111 ; 0.174 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 11 ; 0.117 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2463 ; 1.021 ; 2.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3849 ; 1.908 ; 5.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1629 ; 3.756 ; 7.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1397 ; 5.202 ;10.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 2OKK COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 25-JAN-07. REMARK 100 THE DEPOSITION ID IS D_1000041251. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-APR-06 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.2 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 17-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALA CCP4_3.2.17 23/9/2005, REMARK 200 CCP4 (SCALA) REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 20717 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.300 REMARK 200 RESOLUTION RANGE LOW (A) : 37.190 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : NULL REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.42 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.9 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 2OKJ REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 39.91 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.05 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% ETHANOL, 100 MM MES, 10 MM 2 REMARK 280 -MERCAPTOETHANOL, 20 MM CACL2, PH 6.2, VAPOR DIFFUSION, HANGING REMARK 280 DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 60.00450 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 60.00450 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 39.12550 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 49.52850 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 39.12550 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 49.52850 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 60.00450 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 39.12550 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 49.52850 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 60.00450 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 39.12550 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 49.52850 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE BIOLOGICAL UNIT (DIMER) IS GENERATED BY APPLYING REMARK 300 CRYSTALLOGRAPHIC SYMMETRY. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA,PQS REMARK 350 TOTAL BURIED SURFACE AREA: 13330 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 31890 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -110.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 -60.00450 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 596 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA A 423 REMARK 465 SER A 424 REMARK 465 TYR A 425 REMARK 465 LEU A 426 REMARK 465 PHE A 427 REMARK 465 GLN A 428 REMARK 465 GLN A 429 REMARK 465 ASP A 430 REMARK 465 LYS A 431 REMARK 465 HIS A 432 REMARK 465 TYR A 433 REMARK 465 ASP A 518 REMARK 465 ASN A 519 REMARK 465 GLU A 520 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 PHE A 91 CG CD1 CD2 CE1 CE2 CZ REMARK 470 ASP A 102 CG OD1 OD2 REMARK 470 ARG A 105 CG CD NE CZ NH1 NH2 REMARK 470 GLN A 120 OE1 NE2 REMARK 470 LYS A 124 CD CE NZ REMARK 470 ASN A 139 CG OD1 ND2 REMARK 470 ASP A 151 OD1 OD2 REMARK 470 GLN A 152 CG CD OE1 NE2 REMARK 470 LYS A 303 CD CE NZ REMARK 470 ARG A 307 CZ NH1 NH2 REMARK 470 HIS A 422 CG ND1 CD2 CE1 NE2 REMARK 470 LEU A 435 CG CD1 CD2 REMARK 470 SER A 436 OG REMARK 470 TYR A 437 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 ARG A 460 NE CZ NH1 NH2 REMARK 470 LYS A 473 CD CE NZ REMARK 470 GLU A 476 CD OE1 OE2 REMARK 470 THR A 515 OG1 CG2 REMARK 470 GLU A 517 CG CD OE1 OE2 REMARK 470 GLU A 521 CD OE1 OE2 REMARK 470 ARG A 522 CG CD NE CZ NH1 NH2 REMARK 470 MET A 523 CG SD CE REMARK 470 ARG A 536 CD NE CZ NH1 NH2 REMARK 470 ASP A 584 CG OD1 OD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 201 66.24 38.81 REMARK 500 ALA A 336 79.64 -101.84 REMARK 500 VAL A 340 -71.00 -94.98 REMARK 500 LLP A 396 -94.81 -84.58 REMARK 500 GLN A 403 80.21 75.74 REMARK 500 THR A 439 -37.44 94.84 REMARK 500 CYS A 446 -86.28 -106.93 REMARK 500 HIS A 501 139.38 111.29 REMARK 500 SER A 512 32.31 -90.40 REMARK 500 LEU A 513 -15.01 -152.87 REMARK 500 ASN A 555 110.41 -29.57 REMARK 500 SER A 562 -4.31 -150.92 REMARK 500 GLN A 583 81.06 -153.76 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 GLN A 500 HIS A 501 -36.58 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ABU A 585 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ABU A 586 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 587 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2OKJ RELATED DB: PDB DBREF 2OKK A 88 584 UNP Q05329 DCE2_HUMAN 88 584 SEQRES 1 A 497 ASN TYR ALA PHE LEU HIS ALA THR ASP LEU LEU PRO ALA SEQRES 2 A 497 CYS ASP GLY GLU ARG PRO THR LEU ALA PHE LEU GLN ASP SEQRES 3 A 497 VAL MET ASN ILE LEU LEU GLN TYR VAL VAL LYS SER PHE SEQRES 4 A 497 ASP ARG SER THR LYS VAL ILE ASP PHE HIS TYR PRO ASN SEQRES 5 A 497 GLU LEU LEU GLN GLU TYR ASN TRP GLU LEU ALA ASP GLN SEQRES 6 A 497 PRO GLN ASN LEU GLU GLU ILE LEU MET HIS CYS GLN THR SEQRES 7 A 497 THR LEU LYS TYR ALA ILE LYS THR GLY HIS PRO ARG TYR SEQRES 8 A 497 PHE ASN GLN LEU SER THR GLY LEU ASP MET VAL GLY LEU SEQRES 9 A 497 ALA ALA ASP TRP LEU THR SER THR ALA ASN THR ASN MET SEQRES 10 A 497 PHE THR TYR GLU ILE ALA PRO VAL PHE VAL LEU LEU GLU SEQRES 11 A 497 TYR VAL THR LEU LYS LYS MET ARG GLU ILE ILE GLY TRP SEQRES 12 A 497 PRO GLY GLY SER GLY ASP GLY ILE PHE SER PRO GLY GLY SEQRES 13 A 497 ALA ILE SER ASN MET TYR ALA MET MET ILE ALA ARG PHE SEQRES 14 A 497 LYS MET PHE PRO GLU VAL LYS GLU LYS GLY MET ALA ALA SEQRES 15 A 497 LEU PRO ARG LEU ILE ALA PHE THR SER GLU HIS SER HIS SEQRES 16 A 497 PHE SER LEU LYS LYS GLY ALA ALA ALA LEU GLY ILE GLY SEQRES 17 A 497 THR ASP SER VAL ILE LEU ILE LYS CYS ASP GLU ARG GLY SEQRES 18 A 497 LYS MET ILE PRO SER ASP LEU GLU ARG ARG ILE LEU GLU SEQRES 19 A 497 ALA LYS GLN LYS GLY PHE VAL PRO PHE LEU VAL SER ALA SEQRES 20 A 497 THR ALA GLY THR THR VAL TYR GLY ALA PHE ASP PRO LEU SEQRES 21 A 497 LEU ALA VAL ALA ASP ILE CYS LYS LYS TYR LYS ILE TRP SEQRES 22 A 497 MET HIS VAL ASP ALA ALA TRP GLY GLY GLY LEU LEU MET SEQRES 23 A 497 SER ARG LYS HIS LYS TRP LYS LEU SER GLY VAL GLU ARG SEQRES 24 A 497 ALA ASN SER VAL THR TRP ASN PRO HIS LLP MET MET GLY SEQRES 25 A 497 VAL PRO LEU GLN CYS SER ALA LEU LEU VAL ARG GLU GLU SEQRES 26 A 497 GLY LEU MET GLN ASN CYS ASN GLN MET HIS ALA SER TYR SEQRES 27 A 497 LEU PHE GLN GLN ASP LYS HIS TYR ASP LEU SER TYR ASP SEQRES 28 A 497 THR GLY ASP LYS ALA LEU GLN CYS GLY ARG HIS VAL ASP SEQRES 29 A 497 VAL PHE LYS LEU TRP LEU MET TRP ARG ALA LYS GLY THR SEQRES 30 A 497 THR GLY PHE GLU ALA HIS VAL ASP LYS CYS LEU GLU LEU SEQRES 31 A 497 ALA GLU TYR LEU TYR ASN ILE ILE LYS ASN ARG GLU GLY SEQRES 32 A 497 TYR GLU MET VAL PHE ASP GLY LYS PRO GLN HIS THR ASN SEQRES 33 A 497 VAL CYS PHE TRP TYR ILE PRO PRO SER LEU ARG THR LEU SEQRES 34 A 497 GLU ASP ASN GLU GLU ARG MET SER ARG LEU SER LYS VAL SEQRES 35 A 497 ALA PRO VAL ILE LYS ALA ARG MET MET GLU TYR GLY THR SEQRES 36 A 497 THR MET VAL SER TYR GLN PRO LEU GLY ASP LYS VAL ASN SEQRES 37 A 497 PHE PHE ARG MET VAL ILE SER ASN PRO ALA ALA THR HIS SEQRES 38 A 497 GLN ASP ILE ASP PHE LEU ILE GLU GLU ILE GLU ARG LEU SEQRES 39 A 497 GLY GLN ASP MODRES 2OKK LLP A 396 LYS HET LLP A 396 24 HET ABU A 585 7 HET ABU A 586 7 HET GOL A 587 6 HETNAM LLP (2S)-2-AMINO-6-[[3-HYDROXY-2-METHYL-5- HETNAM 2 LLP (PHOSPHONOOXYMETHYL)PYRIDIN-4- HETNAM 3 LLP YL]METHYLIDENEAMINO]HEXANOIC ACID HETNAM ABU GAMMA-AMINO-BUTANOIC ACID HETNAM GOL GLYCEROL HETSYN LLP N'-PYRIDOXYL-LYSINE-5'-MONOPHOSPHATE HETSYN ABU GAMMA(AMINO)-BUTYRIC ACID HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 1 LLP C14 H22 N3 O7 P FORMUL 2 ABU 2(C4 H9 N O2) FORMUL 4 GOL C3 H8 O3 FORMUL 5 HOH *92(H2 O) HELIX 1 1 ASN A 88 LEU A 92 5 5 HELIX 2 2 HIS A 93 LEU A 97 5 5 HELIX 3 3 GLY A 103 ASP A 127 1 25 HELIX 4 4 TYR A 137 TYR A 145 1 9 HELIX 5 5 ASN A 155 ALA A 170 1 16 HELIX 6 6 ASP A 187 ASN A 201 1 15 HELIX 7 7 ALA A 210 GLY A 229 1 20 HELIX 8 8 TRP A 230 SER A 234 5 5 HELIX 9 9 GLY A 242 PHE A 259 1 18 HELIX 10 10 GLU A 261 GLY A 266 1 6 HELIX 11 11 MET A 267 LEU A 270 5 4 HELIX 12 12 PHE A 283 LEU A 292 1 10 HELIX 13 13 GLY A 295 ASP A 297 5 3 HELIX 14 14 ILE A 311 LYS A 325 1 15 HELIX 15 15 PRO A 346 LYS A 358 1 13 HELIX 16 16 TRP A 367 SER A 374 5 8 HELIX 17 17 HIS A 377 SER A 382 5 6 HELIX 18 18 GLY A 383 ALA A 387 5 5 HELIX 19 19 GLY A 413 GLN A 420 1 8 HELIX 20 20 ASP A 434 ASP A 438 5 5 HELIX 21 21 THR A 439 ALA A 443 5 5 HELIX 22 22 ASP A 451 ASN A 487 1 37 HELIX 23 23 ARG A 522 SER A 527 1 6 HELIX 24 24 LYS A 528 GLY A 541 1 14 HELIX 25 25 THR A 567 GLY A 582 1 16 SHEET 1 A 5 TYR A 178 PHE A 179 0 SHEET 2 A 5 MET A 544 LEU A 550 1 O MET A 544 N PHE A 179 SHEET 3 A 5 LYS A 553 MET A 559 -1 O ARG A 558 N SER A 546 SHEET 4 A 5 VAL A 504 TYR A 508 -1 N VAL A 504 O MET A 559 SHEET 5 A 5 TYR A 491 MET A 493 -1 N GLU A 492 O TRP A 507 SHEET 1 B 7 ASP A 236 SER A 240 0 SHEET 2 B 7 SER A 405 VAL A 409 -1 O VAL A 409 N ASP A 236 SHEET 3 B 7 SER A 389 TRP A 392 -1 N VAL A 390 O LEU A 408 SHEET 4 B 7 TRP A 360 ALA A 365 1 N VAL A 363 O THR A 391 SHEET 5 B 7 VAL A 328 THR A 335 1 N ALA A 334 O ASP A 364 SHEET 6 B 7 LEU A 273 SER A 278 1 N PHE A 276 O SER A 333 SHEET 7 B 7 VAL A 299 ILE A 302 1 O ILE A 302 N THR A 277 LINK C HIS A 395 N LLP A 396 1555 1555 1.33 LINK C LLP A 396 N MET A 397 1555 1555 1.33 CISPEP 1 LEU A 98 PRO A 99 0 11.19 CISPEP 2 ASP A 438 THR A 439 0 5.41 CISPEP 3 GLN A 583 ASP A 584 0 1.45 SITE 1 AC1 6 GLN A 181 LEU A 182 SER A 183 PHE A 205 SITE 2 AC1 6 THR A 339 ARG A 558 SITE 1 AC2 8 GLN A 181 LEU A 182 SER A 183 ASN A 203 SITE 2 AC2 8 HIS A 282 LLP A 396 CYS A 446 HOH A 661 SITE 1 AC3 5 GLU A 279 SER A 281 HIS A 282 PHE A 283 SITE 2 AC3 5 LYS A 286 CRYST1 78.251 99.057 120.009 90.00 90.00 90.00 C 2 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012779 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010095 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008333 0.00000