HEADER OXIDOREDUCTASE 17-JAN-07 2OKU TITLE THE CRYSTAL STRUCTURE OF THE ACYL-COA DEHYDROGENASE FAMILY PROTEIN TITLE 2 FROM PORPHYROMONAS GINGIVALIS COMPND MOL_ID: 1; COMPND 2 MOLECULE: ACYL-COA DEHYDROGENASE FAMILY PROTEIN; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: C-TERMINAL DOMAIN, RESIDUES 443-573; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PORPHYROMONAS GINGIVALIS; SOURCE 3 ORGANISM_TAXID: 242619; SOURCE 4 STRAIN: W83; SOURCE 5 ATCC: BAA-308; SOURCE 6 GENE: PG_0775; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PDM68 KEYWDS THE ACYL-COA DEHYDROGENASE, PORPHYROMONAS GINGIVALIS, PSI-2, MCSG, KEYWDS 2 STRUCTURAL GENOMICS, PROTEIN STRUCTURE INITIATIVE, MIDWEST CENTER KEYWDS 3 FOR STRUCTURAL GENOMICS, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR R.ZHANG,L.BIGELOW,J.ABDULLAH,A.JOACHIMIAK,MIDWEST CENTER FOR AUTHOR 2 STRUCTURAL GENOMICS (MCSG) REVDAT 3 13-JUL-11 2OKU 1 VERSN REVDAT 2 24-FEB-09 2OKU 1 VERSN REVDAT 1 20-FEB-07 2OKU 0 JRNL AUTH R.ZHANG,L.BIGELOW,J.ABDULLAH,A.JOACHIMIAK JRNL TITL THE CRYSTAL STRUCTURE OF THE ACYL-COA DEHYDROGENASE FAMILY JRNL TITL 2 PROTEIN FROM PORPHYROMONAS GINGIVALIS JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD WITH PHASES REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 67.57 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 32154 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.175 REMARK 3 R VALUE (WORKING SET) : 0.173 REMARK 3 FREE R VALUE : 0.205 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1716 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.90 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.95 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2331 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.15 REMARK 3 BIN R VALUE (WORKING SET) : 0.2250 REMARK 3 BIN FREE R VALUE SET COUNT : 109 REMARK 3 BIN FREE R VALUE : 0.2800 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1937 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 352 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 22.50 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 22.48 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.31000 REMARK 3 B22 (A**2) : 0.31000 REMARK 3 B33 (A**2) : -0.63000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.106 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.106 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.061 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.819 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.957 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.944 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1979 ; 0.014 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 1368 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2670 ; 1.342 ; 1.954 REMARK 3 BOND ANGLES OTHERS (DEGREES): 3299 ; 1.413 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 238 ; 4.451 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 110 ;36.404 ;23.455 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 359 ;13.535 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 23 ;13.299 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 296 ; 0.146 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2217 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 426 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 512 ; 0.231 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 1485 ; 0.184 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 990 ; 0.176 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 999 ; 0.087 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 246 ; 0.185 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 8 ; 0.120 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 48 ; 0.336 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 33 ; 0.253 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1527 ; 1.528 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 476 ; 0.244 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1919 ; 1.382 ; 2.000 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 870 ; 3.120 ; 3.000 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 751 ; 4.213 ; 4.500 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 6 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 443 A 480 REMARK 3 RESIDUE RANGE : A 481 A 520 REMARK 3 RESIDUE RANGE : A 521 A 564 REMARK 3 RESIDUE RANGE : B 445 B 480 REMARK 3 RESIDUE RANGE : B 481 B 520 REMARK 3 RESIDUE RANGE : B 521 B 560 REMARK 3 ORIGIN FOR THE GROUP (A): 32.6300 -6.6570 -4.3400 REMARK 3 T TENSOR REMARK 3 T11: -0.0004 T22: -0.0277 REMARK 3 T33: -0.0710 T12: 0.0059 REMARK 3 T13: 0.0023 T23: -0.0167 REMARK 3 L TENSOR REMARK 3 L11: 0.8348 L22: 0.9875 REMARK 3 L33: 0.7317 L12: 0.5781 REMARK 3 L13: 0.2999 L23: 0.1925 REMARK 3 S TENSOR REMARK 3 S11: 0.0427 S12: -0.0698 S13: 0.0104 REMARK 3 S21: 0.0033 S22: -0.0909 S23: 0.0266 REMARK 3 S31: 0.1010 S32: -0.0478 S33: 0.0482 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 2OKU COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 18-JAN-07. REMARK 100 THE RCSB ID CODE IS RCSB041261. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 18-DEC-06 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97980 REMARK 200 MONOCHROMATOR : SI 111 CHANNEL REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 32154 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 67.570 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 18.900 REMARK 200 R MERGE (I) : 0.11400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 31.5300 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.95 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.2 REMARK 200 DATA REDUNDANCY IN SHELL : 17.40 REMARK 200 R MERGE FOR SHELL (I) : 0.80000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.270 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: HKL-3000 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 63.45 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.37 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.26M (NH4)2SO4, 0.1M TRIS-HCL, 0.2M REMARK 280 LISO4, PH 8.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 51.03450 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 45.17000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 45.17000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 76.55175 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 45.17000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 45.17000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 25.51725 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 45.17000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 45.17000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 76.55175 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 45.17000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 45.17000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 25.51725 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 51.03450 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THIS PROTEIN EXISTED AS DIMER. THE DEPOSITED STRUCTURE REMARK 300 REPRESENTS THE DIMER IN THE ASYMMETRIC UNIT. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2170 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 12490 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -16.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 PHE A 565 REMARK 465 TYR A 566 REMARK 465 SER A 567 REMARK 465 ARG A 568 REMARK 465 CYS A 569 REMARK 465 SER A 570 REMARK 465 ARG A 571 REMARK 465 PRO A 572 REMARK 465 GLU A 573 REMARK 465 GLN B 443 REMARK 465 VAL B 444 REMARK 465 GLU B 561 REMARK 465 GLU B 562 REMARK 465 LEU B 563 REMARK 465 THR B 564 REMARK 465 PHE B 565 REMARK 465 TYR B 566 REMARK 465 SER B 567 REMARK 465 ARG B 568 REMARK 465 CYS B 569 REMARK 465 SER B 570 REMARK 465 ARG B 571 REMARK 465 PRO B 572 REMARK 465 GLU B 573 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 84 O HOH B 354 1.75 REMARK 500 O HOH A 252 O HOH A 266 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 509 NE - CZ - NH1 ANGL. DEV. = 4.4 DEGREES REMARK 500 ARG A 509 NE - CZ - NH2 ANGL. DEV. = -3.7 DEGREES REMARK 500 MSE A 524 CG - SE - CE ANGL. DEV. = -21.4 DEGREES REMARK 500 ILE B 460 CG1 - CB - CG2 ANGL. DEV. = 13.9 DEGREES REMARK 500 ARG B 509 NE - CZ - NH1 ANGL. DEV. = 3.3 DEGREES REMARK 500 ARG B 509 NE - CZ - NH2 ANGL. DEV. = -3.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU B 463 -73.77 -105.34 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 184 DISTANCE = 5.75 ANGSTROMS REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: APC90333.2 RELATED DB: TARGETDB DBREF 2OKU A 443 573 UNP Q7MW70 Q7MW70_PORGI 443 573 DBREF 2OKU B 443 573 UNP Q7MW70 Q7MW70_PORGI 443 573 SEQADV 2OKU MSE A 476 UNP Q7MW70 MET 476 MODIFIED RESIDUE SEQADV 2OKU MSE A 483 UNP Q7MW70 MET 483 MODIFIED RESIDUE SEQADV 2OKU MSE A 513 UNP Q7MW70 MET 513 MODIFIED RESIDUE SEQADV 2OKU MSE A 524 UNP Q7MW70 MET 524 MODIFIED RESIDUE SEQADV 2OKU MSE B 476 UNP Q7MW70 MET 476 MODIFIED RESIDUE SEQADV 2OKU MSE B 483 UNP Q7MW70 MET 483 MODIFIED RESIDUE SEQADV 2OKU MSE B 513 UNP Q7MW70 MET 513 MODIFIED RESIDUE SEQADV 2OKU MSE B 524 UNP Q7MW70 MET 524 MODIFIED RESIDUE SEQRES 1 A 131 GLN VAL VAL ALA ALA ILE ARG HIS ILE THR THR GLY THR SEQRES 2 A 131 TYR ILE ALA ARG ILE ARG GLU GLU TYR GLN GLN THR GLU SEQRES 3 A 131 VAL LYS PRO GLU LEU GLN PRO MSE LYS GLU ALA LEU ALA SEQRES 4 A 131 ARG MSE THR ASP ARG ALA GLU ALA LEU ILE ALA PHE VAL SEQRES 5 A 131 THR GLU GLN LYS ASP GLN GLU LEU LEU ASP PHE GLN ALA SEQRES 6 A 131 ARG ARG LEU VAL GLU MSE THR ALA HIS ALA VAL PHE GLY SEQRES 7 A 131 HIS LEU LEU MSE LEU ALA ALA ASN ASP ASP ASP SER PHE SEQRES 8 A 131 ARG GLN SER ALA GLU VAL TYR LEU ARG TYR GLY GLN ALA SEQRES 9 A 131 GLU GLN GLU LYS ILE ASP SER TYR VAL ARG ALA PHE ARG SEQRES 10 A 131 PRO GLU GLU LEU THR PHE TYR SER ARG CYS SER ARG PRO SEQRES 11 A 131 GLU SEQRES 1 B 131 GLN VAL VAL ALA ALA ILE ARG HIS ILE THR THR GLY THR SEQRES 2 B 131 TYR ILE ALA ARG ILE ARG GLU GLU TYR GLN GLN THR GLU SEQRES 3 B 131 VAL LYS PRO GLU LEU GLN PRO MSE LYS GLU ALA LEU ALA SEQRES 4 B 131 ARG MSE THR ASP ARG ALA GLU ALA LEU ILE ALA PHE VAL SEQRES 5 B 131 THR GLU GLN LYS ASP GLN GLU LEU LEU ASP PHE GLN ALA SEQRES 6 B 131 ARG ARG LEU VAL GLU MSE THR ALA HIS ALA VAL PHE GLY SEQRES 7 B 131 HIS LEU LEU MSE LEU ALA ALA ASN ASP ASP ASP SER PHE SEQRES 8 B 131 ARG GLN SER ALA GLU VAL TYR LEU ARG TYR GLY GLN ALA SEQRES 9 B 131 GLU GLN GLU LYS ILE ASP SER TYR VAL ARG ALA PHE ARG SEQRES 10 B 131 PRO GLU GLU LEU THR PHE TYR SER ARG CYS SER ARG PRO SEQRES 11 B 131 GLU MODRES 2OKU MSE A 476 MET SELENOMETHIONINE MODRES 2OKU MSE A 483 MET SELENOMETHIONINE MODRES 2OKU MSE A 513 MET SELENOMETHIONINE MODRES 2OKU MSE A 524 MET SELENOMETHIONINE MODRES 2OKU MSE B 476 MET SELENOMETHIONINE MODRES 2OKU MSE B 483 MET SELENOMETHIONINE MODRES 2OKU MSE B 513 MET SELENOMETHIONINE MODRES 2OKU MSE B 524 MET SELENOMETHIONINE HET MSE A 476 8 HET MSE A 483 8 HET MSE A 513 8 HET MSE A 524 8 HET MSE B 476 8 HET MSE B 483 8 HET MSE B 513 8 HET MSE B 524 8 HETNAM MSE SELENOMETHIONINE FORMUL 1 MSE 8(C5 H11 N O2 SE) FORMUL 3 HOH *352(H2 O) HELIX 1 1 GLN A 443 ILE A 448 1 6 HELIX 2 2 ILE A 448 GLY A 454 1 7 HELIX 3 3 GLY A 454 GLU A 463 1 10 HELIX 4 4 TYR A 464 THR A 467 5 4 HELIX 5 5 LYS A 470 GLU A 472 5 3 HELIX 6 6 LEU A 473 GLU A 496 1 24 HELIX 7 7 ASP A 499 ASP A 530 1 32 HELIX 8 8 PHE A 533 PHE A 558 1 26 HELIX 9 9 ARG A 559 LEU A 563 5 5 HELIX 10 10 VAL B 445 GLY B 454 1 10 HELIX 11 11 GLY B 454 GLU B 463 1 10 HELIX 12 12 TYR B 464 THR B 467 5 4 HELIX 13 13 LYS B 470 GLU B 472 5 3 HELIX 14 14 LEU B 473 GLU B 496 1 24 HELIX 15 15 ASP B 499 ASP B 530 1 32 HELIX 16 16 PHE B 533 PHE B 558 1 26 LINK C PRO A 475 N MSE A 476 1555 1555 1.33 LINK C MSE A 476 N LYS A 477 1555 1555 1.33 LINK C ARG A 482 N MSE A 483 1555 1555 1.34 LINK C MSE A 483 N THR A 484 1555 1555 1.33 LINK C GLU A 512 N MSE A 513 1555 1555 1.33 LINK C MSE A 513 N THR A 514 1555 1555 1.33 LINK C LEU A 523 N MSE A 524 1555 1555 1.33 LINK C MSE A 524 N LEU A 525 1555 1555 1.33 LINK C PRO B 475 N MSE B 476 1555 1555 1.33 LINK C MSE B 476 N LYS B 477 1555 1555 1.34 LINK C ARG B 482 N MSE B 483 1555 1555 1.34 LINK C MSE B 483 N THR B 484 1555 1555 1.33 LINK C GLU B 512 N MSE B 513 1555 1555 1.33 LINK C MSE B 513 N THR B 514 1555 1555 1.33 LINK C LEU B 523 N MSE B 524 1555 1555 1.34 LINK C MSE B 524 N LEU B 525 1555 1555 1.33 CRYST1 90.340 90.340 102.069 90.00 90.00 90.00 P 43 21 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011069 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011069 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009797 0.00000