HEADER OXIDOREDUCTASE 17-JAN-07 2OKU TITLE THE CRYSTAL STRUCTURE OF THE ACYL-COA DEHYDROGENASE FAMILY PROTEIN TITLE 2 FROM PORPHYROMONAS GINGIVALIS COMPND MOL_ID: 1; COMPND 2 MOLECULE: ACYL-COA DEHYDROGENASE FAMILY PROTEIN; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: C-TERMINAL DOMAIN, RESIDUES 443-573; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PORPHYROMONAS GINGIVALIS; SOURCE 3 ORGANISM_TAXID: 242619; SOURCE 4 STRAIN: W83; SOURCE 5 ATCC: BAA-308; SOURCE 6 GENE: PG_0775; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PDM68 KEYWDS THE ACYL-COA DEHYDROGENASE, PORPHYROMONAS GINGIVALIS, PSI-2, MCSG, KEYWDS 2 STRUCTURAL GENOMICS, PROTEIN STRUCTURE INITIATIVE, MIDWEST CENTER KEYWDS 3 FOR STRUCTURAL GENOMICS, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR R.ZHANG,L.BIGELOW,J.ABDULLAH,A.JOACHIMIAK,MIDWEST CENTER FOR AUTHOR 2 STRUCTURAL GENOMICS (MCSG) REVDAT 4 27-DEC-23 2OKU 1 SEQADV LINK REVDAT 3 13-JUL-11 2OKU 1 VERSN REVDAT 2 24-FEB-09 2OKU 1 VERSN REVDAT 1 20-FEB-07 2OKU 0 JRNL AUTH R.ZHANG,L.BIGELOW,J.ABDULLAH,A.JOACHIMIAK JRNL TITL THE CRYSTAL STRUCTURE OF THE ACYL-COA DEHYDROGENASE FAMILY JRNL TITL 2 PROTEIN FROM PORPHYROMONAS GINGIVALIS JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD WITH PHASES REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 67.57 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 32154 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.175 REMARK 3 R VALUE (WORKING SET) : 0.173 REMARK 3 FREE R VALUE : 0.205 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1716 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.90 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.95 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2331 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.15 REMARK 3 BIN R VALUE (WORKING SET) : 0.2250 REMARK 3 BIN FREE R VALUE SET COUNT : 109 REMARK 3 BIN FREE R VALUE : 0.2800 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1937 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 352 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 22.50 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 22.48 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.31000 REMARK 3 B22 (A**2) : 0.31000 REMARK 3 B33 (A**2) : -0.63000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.106 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.106 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.061 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.819 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.957 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.944 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1979 ; 0.014 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 1368 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2670 ; 1.342 ; 1.954 REMARK 3 BOND ANGLES OTHERS (DEGREES): 3299 ; 1.413 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 238 ; 4.451 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 110 ;36.404 ;23.455 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 359 ;13.535 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 23 ;13.299 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 296 ; 0.146 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2217 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 426 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 512 ; 0.231 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 1485 ; 0.184 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 990 ; 0.176 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 999 ; 0.087 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 246 ; 0.185 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 8 ; 0.120 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 48 ; 0.336 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 33 ; 0.253 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1527 ; 1.528 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 476 ; 0.244 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1919 ; 1.382 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 870 ; 3.120 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 751 ; 4.213 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 6 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 443 A 480 REMARK 3 RESIDUE RANGE : A 481 A 520 REMARK 3 RESIDUE RANGE : A 521 A 564 REMARK 3 RESIDUE RANGE : B 445 B 480 REMARK 3 RESIDUE RANGE : B 481 B 520 REMARK 3 RESIDUE RANGE : B 521 B 560 REMARK 3 ORIGIN FOR THE GROUP (A): 32.6300 -6.6570 -4.3400 REMARK 3 T TENSOR REMARK 3 T11: -0.0004 T22: -0.0277 REMARK 3 T33: -0.0710 T12: 0.0059 REMARK 3 T13: 0.0023 T23: -0.0167 REMARK 3 L TENSOR REMARK 3 L11: 0.8348 L22: 0.9875 REMARK 3 L33: 0.7317 L12: 0.5781 REMARK 3 L13: 0.2999 L23: 0.1925 REMARK 3 S TENSOR REMARK 3 S11: 0.0427 S12: -0.0698 S13: 0.0104 REMARK 3 S21: 0.0033 S22: -0.0909 S23: 0.0266 REMARK 3 S31: 0.1010 S32: -0.0478 S33: 0.0482 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 2OKU COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 18-JAN-07. REMARK 100 THE DEPOSITION ID IS D_1000041261. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 18-DEC-06 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97980 REMARK 200 MONOCHROMATOR : SI 111 CHANNEL REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 32154 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 67.570 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 18.90 REMARK 200 R MERGE (I) : 0.11400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 31.5300 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.95 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.2 REMARK 200 DATA REDUNDANCY IN SHELL : 17.40 REMARK 200 R MERGE FOR SHELL (I) : 0.80000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.270 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: HKL-3000 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 63.45 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.37 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.26M (NH4)2SO4, 0.1M TRIS-HCL, 0.2M REMARK 280 LISO4, PH 8.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 51.03450 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 45.17000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 45.17000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 76.55175 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 45.17000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 45.17000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 25.51725 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 45.17000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 45.17000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 76.55175 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 45.17000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 45.17000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 25.51725 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 51.03450 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THIS PROTEIN EXISTED AS DIMER. THE DEPOSITED STRUCTURE REMARK 300 REPRESENTS THE DIMER IN THE ASYMMETRIC UNIT. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2170 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 12490 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -16.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 PHE A 565 REMARK 465 TYR A 566 REMARK 465 SER A 567 REMARK 465 ARG A 568 REMARK 465 CYS A 569 REMARK 465 SER A 570 REMARK 465 ARG A 571 REMARK 465 PRO A 572 REMARK 465 GLU A 573 REMARK 465 GLN B 443 REMARK 465 VAL B 444 REMARK 465 GLU B 561 REMARK 465 GLU B 562 REMARK 465 LEU B 563 REMARK 465 THR B 564 REMARK 465 PHE B 565 REMARK 465 TYR B 566 REMARK 465 SER B 567 REMARK 465 ARG B 568 REMARK 465 CYS B 569 REMARK 465 SER B 570 REMARK 465 ARG B 571 REMARK 465 PRO B 572 REMARK 465 GLU B 573 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 84 O HOH B 354 1.75 REMARK 500 O HOH A 252 O HOH A 266 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 509 NE - CZ - NH1 ANGL. DEV. = 4.4 DEGREES REMARK 500 ARG A 509 NE - CZ - NH2 ANGL. DEV. = -3.7 DEGREES REMARK 500 MSE A 524 CG - SE - CE ANGL. DEV. = -21.4 DEGREES REMARK 500 ILE B 460 CG1 - CB - CG2 ANGL. DEV. = 13.9 DEGREES REMARK 500 ARG B 509 NE - CZ - NH1 ANGL. DEV. = 3.3 DEGREES REMARK 500 ARG B 509 NE - CZ - NH2 ANGL. DEV. = -3.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU B 463 -73.77 -105.34 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: APC90333.2 RELATED DB: TARGETDB DBREF 2OKU A 443 573 UNP Q7MW70 Q7MW70_PORGI 443 573 DBREF 2OKU B 443 573 UNP Q7MW70 Q7MW70_PORGI 443 573 SEQADV 2OKU MSE A 476 UNP Q7MW70 MET 476 MODIFIED RESIDUE SEQADV 2OKU MSE A 483 UNP Q7MW70 MET 483 MODIFIED RESIDUE SEQADV 2OKU MSE A 513 UNP Q7MW70 MET 513 MODIFIED RESIDUE SEQADV 2OKU MSE A 524 UNP Q7MW70 MET 524 MODIFIED RESIDUE SEQADV 2OKU MSE B 476 UNP Q7MW70 MET 476 MODIFIED RESIDUE SEQADV 2OKU MSE B 483 UNP Q7MW70 MET 483 MODIFIED RESIDUE SEQADV 2OKU MSE B 513 UNP Q7MW70 MET 513 MODIFIED RESIDUE SEQADV 2OKU MSE B 524 UNP Q7MW70 MET 524 MODIFIED RESIDUE SEQRES 1 A 131 GLN VAL VAL ALA ALA ILE ARG HIS ILE THR THR GLY THR SEQRES 2 A 131 TYR ILE ALA ARG ILE ARG GLU GLU TYR GLN GLN THR GLU SEQRES 3 A 131 VAL LYS PRO GLU LEU GLN PRO MSE LYS GLU ALA LEU ALA SEQRES 4 A 131 ARG MSE THR ASP ARG ALA GLU ALA LEU ILE ALA PHE VAL SEQRES 5 A 131 THR GLU GLN LYS ASP GLN GLU LEU LEU ASP PHE GLN ALA SEQRES 6 A 131 ARG ARG LEU VAL GLU MSE THR ALA HIS ALA VAL PHE GLY SEQRES 7 A 131 HIS LEU LEU MSE LEU ALA ALA ASN ASP ASP ASP SER PHE SEQRES 8 A 131 ARG GLN SER ALA GLU VAL TYR LEU ARG TYR GLY GLN ALA SEQRES 9 A 131 GLU GLN GLU LYS ILE ASP SER TYR VAL ARG ALA PHE ARG SEQRES 10 A 131 PRO GLU GLU LEU THR PHE TYR SER ARG CYS SER ARG PRO SEQRES 11 A 131 GLU SEQRES 1 B 131 GLN VAL VAL ALA ALA ILE ARG HIS ILE THR THR GLY THR SEQRES 2 B 131 TYR ILE ALA ARG ILE ARG GLU GLU TYR GLN GLN THR GLU SEQRES 3 B 131 VAL LYS PRO GLU LEU GLN PRO MSE LYS GLU ALA LEU ALA SEQRES 4 B 131 ARG MSE THR ASP ARG ALA GLU ALA LEU ILE ALA PHE VAL SEQRES 5 B 131 THR GLU GLN LYS ASP GLN GLU LEU LEU ASP PHE GLN ALA SEQRES 6 B 131 ARG ARG LEU VAL GLU MSE THR ALA HIS ALA VAL PHE GLY SEQRES 7 B 131 HIS LEU LEU MSE LEU ALA ALA ASN ASP ASP ASP SER PHE SEQRES 8 B 131 ARG GLN SER ALA GLU VAL TYR LEU ARG TYR GLY GLN ALA SEQRES 9 B 131 GLU GLN GLU LYS ILE ASP SER TYR VAL ARG ALA PHE ARG SEQRES 10 B 131 PRO GLU GLU LEU THR PHE TYR SER ARG CYS SER ARG PRO SEQRES 11 B 131 GLU MODRES 2OKU MSE A 476 MET SELENOMETHIONINE MODRES 2OKU MSE A 483 MET SELENOMETHIONINE MODRES 2OKU MSE A 513 MET SELENOMETHIONINE MODRES 2OKU MSE A 524 MET SELENOMETHIONINE MODRES 2OKU MSE B 476 MET SELENOMETHIONINE MODRES 2OKU MSE B 483 MET SELENOMETHIONINE MODRES 2OKU MSE B 513 MET SELENOMETHIONINE MODRES 2OKU MSE B 524 MET SELENOMETHIONINE HET MSE A 476 8 HET MSE A 483 8 HET MSE A 513 8 HET MSE A 524 8 HET MSE B 476 8 HET MSE B 483 8 HET MSE B 513 8 HET MSE B 524 8 HETNAM MSE SELENOMETHIONINE FORMUL 1 MSE 8(C5 H11 N O2 SE) FORMUL 3 HOH *352(H2 O) HELIX 1 1 GLN A 443 ILE A 448 1 6 HELIX 2 2 ILE A 448 GLY A 454 1 7 HELIX 3 3 GLY A 454 GLU A 463 1 10 HELIX 4 4 TYR A 464 THR A 467 5 4 HELIX 5 5 LYS A 470 GLU A 472 5 3 HELIX 6 6 LEU A 473 GLU A 496 1 24 HELIX 7 7 ASP A 499 ASP A 530 1 32 HELIX 8 8 PHE A 533 PHE A 558 1 26 HELIX 9 9 ARG A 559 LEU A 563 5 5 HELIX 10 10 VAL B 445 GLY B 454 1 10 HELIX 11 11 GLY B 454 GLU B 463 1 10 HELIX 12 12 TYR B 464 THR B 467 5 4 HELIX 13 13 LYS B 470 GLU B 472 5 3 HELIX 14 14 LEU B 473 GLU B 496 1 24 HELIX 15 15 ASP B 499 ASP B 530 1 32 HELIX 16 16 PHE B 533 PHE B 558 1 26 LINK C PRO A 475 N MSE A 476 1555 1555 1.33 LINK C MSE A 476 N LYS A 477 1555 1555 1.33 LINK C ARG A 482 N MSE A 483 1555 1555 1.34 LINK C MSE A 483 N THR A 484 1555 1555 1.33 LINK C GLU A 512 N MSE A 513 1555 1555 1.33 LINK C MSE A 513 N THR A 514 1555 1555 1.33 LINK C LEU A 523 N MSE A 524 1555 1555 1.33 LINK C MSE A 524 N LEU A 525 1555 1555 1.33 LINK C PRO B 475 N MSE B 476 1555 1555 1.33 LINK C MSE B 476 N LYS B 477 1555 1555 1.34 LINK C ARG B 482 N MSE B 483 1555 1555 1.34 LINK C MSE B 483 N THR B 484 1555 1555 1.33 LINK C GLU B 512 N MSE B 513 1555 1555 1.33 LINK C MSE B 513 N THR B 514 1555 1555 1.33 LINK C LEU B 523 N MSE B 524 1555 1555 1.34 LINK C MSE B 524 N LEU B 525 1555 1555 1.33 CRYST1 90.340 90.340 102.069 90.00 90.00 90.00 P 43 21 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011069 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011069 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009797 0.00000