HEADER HYDROLASE 18-JAN-07 2OL1 TITLE HIGH RESOLUTION CRYSTAL STRUCTURES OF VACCINIA VIRUS DUTPASE COMPND MOL_ID: 1; COMPND 2 MOLECULE: DEOXYURIDINE 5'-TRIPHOSPHATE NUCLEOTIDOHYDROLASE; COMPND 3 CHAIN: A, B, C; COMPND 4 SYNONYM: DUTPASE, DUTP PYROPHOSPHATASE; COMPND 5 EC: 3.6.1.23; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: VACCINIA VIRUS; SOURCE 3 ORGANISM_TAXID: 10245; SOURCE 4 GENE: DUT; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)PLYSS; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET15B KEYWDS FOLD, JELLY-ROLL, SUPERFAMILY, DUTPASE-LIKE, FORMS TIGHT TRIMER KEYWDS 2 THROUGH AN ADDITIONAL BETA-SHEET IN EACH SUBUNIT, SUBUNIT BETA- KEYWDS 3 SHEETS ARE ORTHOGONALLY PACKED AROUND THE THREE-FOLD AXIS, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR N.SCHORMANN,D.CHATTOPADHYAY REVDAT 5 30-AUG-23 2OL1 1 REMARK REVDAT 4 20-OCT-21 2OL1 1 REMARK SEQADV REVDAT 3 13-JUL-11 2OL1 1 VERSN REVDAT 2 24-FEB-09 2OL1 1 VERSN REVDAT 1 01-MAY-07 2OL1 0 JRNL AUTH A.SAMAL,N.SCHORMANN,W.J.COOK,L.J.DELUCAS,D.CHATTOPADHYAY JRNL TITL STRUCTURES OF VACCINIA VIRUS DUTPASE AND ITS NUCLEOTIDE JRNL TITL 2 COMPLEXES. JRNL REF ACTA CRYSTALLOGR.,SECT.D V. 63 571 2007 JRNL REFN ISSN 0907-4449 JRNL PMID 17452782 JRNL DOI 10.1107/S0907444907007871 REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.3.0011 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.23 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.5 REMARK 3 NUMBER OF REFLECTIONS : 34538 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.201 REMARK 3 R VALUE (WORKING SET) : 0.199 REMARK 3 FREE R VALUE : 0.231 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1831 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.80 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.85 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2134 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 93.50 REMARK 3 BIN R VALUE (WORKING SET) : 0.2750 REMARK 3 BIN FREE R VALUE SET COUNT : 124 REMARK 3 BIN FREE R VALUE : 0.3090 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2915 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 69 REMARK 3 SOLVENT ATOMS : 262 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 22.00 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 25.52 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.00000 REMARK 3 B22 (A**2) : 0.00000 REMARK 3 B33 (A**2) : 0.01000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.144 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.131 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.084 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 5.022 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.946 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.931 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3092 ; 0.007 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4182 ; 1.031 ; 2.010 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 372 ; 5.758 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 143 ;33.340 ;23.497 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 531 ;11.963 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 28 ;16.045 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 443 ; 0.064 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2358 ; 0.003 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1338 ; 0.175 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 2087 ; 0.307 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 277 ; 0.091 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 32 ; 0.149 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 13 ; 0.144 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1912 ; 0.331 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3012 ; 0.580 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1348 ; 0.945 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1170 ; 1.594 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 8 A 131 REMARK 3 ORIGIN FOR THE GROUP (A): 14.238 31.8890 -6.3650 REMARK 3 T TENSOR REMARK 3 T11: -0.1364 T22: -0.1488 REMARK 3 T33: 0.0644 T12: 0.0099 REMARK 3 T13: 0.0011 T23: -0.0072 REMARK 3 L TENSOR REMARK 3 L11: 0.9174 L22: 0.9021 REMARK 3 L33: 1.6055 L12: -0.0976 REMARK 3 L13: 0.0215 L23: 0.2717 REMARK 3 S TENSOR REMARK 3 S11: -0.0095 S12: -0.0067 S13: 0.0162 REMARK 3 S21: 0.0969 S22: -0.0742 S23: 0.0101 REMARK 3 S31: -0.1092 S32: 0.0936 S33: 0.0170 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 8 B 131 REMARK 3 ORIGIN FOR THE GROUP (A): 2.3200 47.6350 -4.1320 REMARK 3 T TENSOR REMARK 3 T11: -0.1596 T22: -0.1321 REMARK 3 T33: 0.0637 T12: 0.0041 REMARK 3 T13: -0.0161 T23: 0.0134 REMARK 3 L TENSOR REMARK 3 L11: 2.2616 L22: 0.9946 REMARK 3 L33: 0.7739 L12: -0.0498 REMARK 3 L13: -0.1145 L23: -0.0506 REMARK 3 S TENSOR REMARK 3 S11: 0.0138 S12: -0.0269 S13: 0.0130 REMARK 3 S21: 0.0672 S22: 0.1841 S23: 0.0111 REMARK 3 S31: -0.0639 S32: -0.0466 S33: -0.0314 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 7 C 131 REMARK 3 ORIGIN FOR THE GROUP (A): 15.161 42.8410 10.0320 REMARK 3 T TENSOR REMARK 3 T11: -0.1741 T22: -0.1557 REMARK 3 T33: 0.0315 T12: -0.0107 REMARK 3 T13: 0.0005 T23: -0.0113 REMARK 3 L TENSOR REMARK 3 L11: 1.3742 L22: 0.7536 REMARK 3 L33: 1.3827 L12: -0.1226 REMARK 3 L13: 0.3313 L23: -0.2490 REMARK 3 S TENSOR REMARK 3 S11: 0.0028 S12: -0.0207 S13: 0.0180 REMARK 3 S21: -0.0389 S22: 0.0595 S23: -0.0247 REMARK 3 S31: 0.0090 S32: 0.0056 S33: 0.0075 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 2OL1 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 22-JAN-07. REMARK 100 THE DEPOSITION ID IS D_1000041268. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 05-NOV-05 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 7.00 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU RU200 REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : GRAPHITE REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS IV REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 36946 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.2 REMARK 200 DATA REDUNDANCY : 3.600 REMARK 200 R MERGE (I) : 0.04600 REMARK 200 R SYM (I) : 0.04600 REMARK 200 FOR THE DATA SET : 18.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.86 REMARK 200 COMPLETENESS FOR SHELL (%) : 87.9 REMARK 200 DATA REDUNDANCY IN SHELL : 3.00 REMARK 200 R MERGE FOR SHELL (I) : 0.19600 REMARK 200 R SYM FOR SHELL (I) : 0.19600 REMARK 200 FOR SHELL : 3.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 2OKD REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 42.16 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.13 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% PEG2000 MME, 0.1M TRIS, PH 7.0, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 298K, PH 7.00 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 65 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/6 REMARK 290 6555 X-Y,X,Z+5/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 33.42000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 16.71000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 25.06500 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 8.35500 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 41.77500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE ASYMMETRIC UNIT CONTAINS A HOMO-TRIMER WITH MONOMERS REMARK 300 RELATED BY NON-CRYSTALLOGRAPHIC SYMMETRY. THIS HOMO-TRIMER REMARK 300 CONSTITUTES THE BIOLOGICAL ASSEMBLY. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 10070 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 15860 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -42.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 PHE A 2 REMARK 465 ASN A 3 REMARK 465 MET A 4 REMARK 465 ASN A 5 REMARK 465 ILE A 6 REMARK 465 ASN A 7 REMARK 465 ASP A 132 REMARK 465 SER A 133 REMARK 465 THR A 134 REMARK 465 ASN A 135 REMARK 465 ARG A 136 REMARK 465 GLY A 137 REMARK 465 ASP A 138 REMARK 465 GLN A 139 REMARK 465 GLY A 140 REMARK 465 PHE A 141 REMARK 465 GLY A 142 REMARK 465 SER A 143 REMARK 465 THR A 144 REMARK 465 GLY A 145 REMARK 465 LEU A 146 REMARK 465 ARG A 147 REMARK 465 MET B 1 REMARK 465 PHE B 2 REMARK 465 ASN B 3 REMARK 465 MET B 4 REMARK 465 ASN B 5 REMARK 465 ILE B 6 REMARK 465 ASN B 7 REMARK 465 ASP B 132 REMARK 465 SER B 133 REMARK 465 THR B 134 REMARK 465 ASN B 135 REMARK 465 ARG B 136 REMARK 465 GLY B 137 REMARK 465 ASP B 138 REMARK 465 GLN B 139 REMARK 465 GLY B 140 REMARK 465 PHE B 141 REMARK 465 GLY B 142 REMARK 465 SER B 143 REMARK 465 THR B 144 REMARK 465 GLY B 145 REMARK 465 LEU B 146 REMARK 465 ARG B 147 REMARK 465 MET C 1 REMARK 465 PHE C 2 REMARK 465 ASN C 3 REMARK 465 MET C 4 REMARK 465 ASN C 5 REMARK 465 ILE C 6 REMARK 465 ASP C 132 REMARK 465 SER C 133 REMARK 465 THR C 134 REMARK 465 ASN C 135 REMARK 465 ARG C 136 REMARK 465 GLY C 137 REMARK 465 ASP C 138 REMARK 465 GLN C 139 REMARK 465 GLY C 140 REMARK 465 PHE C 141 REMARK 465 GLY C 142 REMARK 465 SER C 143 REMARK 465 THR C 144 REMARK 465 GLY C 145 REMARK 465 LEU C 146 REMARK 465 ARG C 147 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR A 122 75.52 -116.16 REMARK 500 ALA B 113 -177.87 -172.61 REMARK 500 TYR B 122 79.16 -117.67 REMARK 500 TYR C 122 73.08 -111.43 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE UMP C 1201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE UMP C 1202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE UMP C 1203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO C 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO C 402 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2OKD RELATED DB: PDB REMARK 900 APO-ENZYME OF VACCINIA VIRUS DUTPASE REMARK 900 RELATED ID: 2OKB RELATED DB: PDB REMARK 900 N-TERMINALLY TRUNCATED VERSION OF VACCINIA VIRUS DUTPASE REMARK 900 RELATED ID: 2OKE RELATED DB: PDB REMARK 900 STRUCTURE OF VACCINIA VIRUS DUTPASE WITH SUBSTRATE ANALOG REMARK 900 RELATED ID: 2OL0 RELATED DB: PDB REMARK 900 STRUCTURE OF VACCINIA VIRUS DUTPASE WITH INHIBITOR DBREF 2OL1 A 1 147 GB 29692147 AAO89320 1 147 DBREF 2OL1 B 1 147 GB 29692147 AAO89320 1 147 DBREF 2OL1 C 1 147 GB 29692147 AAO89320 1 147 SEQADV 2OL1 GLY A 28 GB 29692147 TYR 28 ENGINEERED MUTATION SEQADV 2OL1 GLY B 28 GB 29692147 TYR 28 ENGINEERED MUTATION SEQADV 2OL1 GLY C 28 GB 29692147 TYR 28 ENGINEERED MUTATION SEQRES 1 A 147 MET PHE ASN MET ASN ILE ASN SER PRO VAL ARG PHE VAL SEQRES 2 A 147 LYS GLU THR ASN ARG ALA LYS SER PRO THR ARG GLN SER SEQRES 3 A 147 PRO GLY ALA ALA GLY TYR ASP LEU TYR SER ALA TYR ASP SEQRES 4 A 147 TYR THR ILE PRO PRO GLY GLU ARG GLN LEU ILE LYS THR SEQRES 5 A 147 ASP ILE SER MET SER MET PRO LYS PHE CYS TYR GLY ARG SEQRES 6 A 147 ILE ALA PRO ARG SER GLY LEU SER LEU LYS GLY ILE ASP SEQRES 7 A 147 ILE GLY GLY GLY VAL ILE ASP GLU ASP TYR ARG GLY ASN SEQRES 8 A 147 ILE GLY VAL ILE LEU ILE ASN ASN GLY LYS CYS THR PHE SEQRES 9 A 147 ASN VAL ASN THR GLY ASP ARG ILE ALA GLN LEU ILE TYR SEQRES 10 A 147 GLN ARG ILE TYR TYR PRO GLU LEU GLU GLU VAL GLN SER SEQRES 11 A 147 LEU ASP SER THR ASN ARG GLY ASP GLN GLY PHE GLY SER SEQRES 12 A 147 THR GLY LEU ARG SEQRES 1 B 147 MET PHE ASN MET ASN ILE ASN SER PRO VAL ARG PHE VAL SEQRES 2 B 147 LYS GLU THR ASN ARG ALA LYS SER PRO THR ARG GLN SER SEQRES 3 B 147 PRO GLY ALA ALA GLY TYR ASP LEU TYR SER ALA TYR ASP SEQRES 4 B 147 TYR THR ILE PRO PRO GLY GLU ARG GLN LEU ILE LYS THR SEQRES 5 B 147 ASP ILE SER MET SER MET PRO LYS PHE CYS TYR GLY ARG SEQRES 6 B 147 ILE ALA PRO ARG SER GLY LEU SER LEU LYS GLY ILE ASP SEQRES 7 B 147 ILE GLY GLY GLY VAL ILE ASP GLU ASP TYR ARG GLY ASN SEQRES 8 B 147 ILE GLY VAL ILE LEU ILE ASN ASN GLY LYS CYS THR PHE SEQRES 9 B 147 ASN VAL ASN THR GLY ASP ARG ILE ALA GLN LEU ILE TYR SEQRES 10 B 147 GLN ARG ILE TYR TYR PRO GLU LEU GLU GLU VAL GLN SER SEQRES 11 B 147 LEU ASP SER THR ASN ARG GLY ASP GLN GLY PHE GLY SER SEQRES 12 B 147 THR GLY LEU ARG SEQRES 1 C 147 MET PHE ASN MET ASN ILE ASN SER PRO VAL ARG PHE VAL SEQRES 2 C 147 LYS GLU THR ASN ARG ALA LYS SER PRO THR ARG GLN SER SEQRES 3 C 147 PRO GLY ALA ALA GLY TYR ASP LEU TYR SER ALA TYR ASP SEQRES 4 C 147 TYR THR ILE PRO PRO GLY GLU ARG GLN LEU ILE LYS THR SEQRES 5 C 147 ASP ILE SER MET SER MET PRO LYS PHE CYS TYR GLY ARG SEQRES 6 C 147 ILE ALA PRO ARG SER GLY LEU SER LEU LYS GLY ILE ASP SEQRES 7 C 147 ILE GLY GLY GLY VAL ILE ASP GLU ASP TYR ARG GLY ASN SEQRES 8 C 147 ILE GLY VAL ILE LEU ILE ASN ASN GLY LYS CYS THR PHE SEQRES 9 C 147 ASN VAL ASN THR GLY ASP ARG ILE ALA GLN LEU ILE TYR SEQRES 10 C 147 GLN ARG ILE TYR TYR PRO GLU LEU GLU GLU VAL GLN SER SEQRES 11 C 147 LEU ASP SER THR ASN ARG GLY ASP GLN GLY PHE GLY SER SEQRES 12 C 147 THR GLY LEU ARG HET CL A 301 1 HET UMP C1201 20 HET UMP C1202 20 HET UMP C1203 20 HET EDO C 401 4 HET EDO C 402 4 HETNAM CL CHLORIDE ION HETNAM UMP 2'-DEOXYURIDINE 5'-MONOPHOSPHATE HETNAM EDO 1,2-ETHANEDIOL HETSYN UMP DUMP HETSYN EDO ETHYLENE GLYCOL FORMUL 4 CL CL 1- FORMUL 5 UMP 3(C9 H13 N2 O8 P) FORMUL 8 EDO 2(C2 H6 O2) FORMUL 10 HOH *262(H2 O) HELIX 1 1 ARG A 69 LEU A 74 1 6 HELIX 2 2 ARG B 69 LYS B 75 1 7 HELIX 3 3 ARG C 69 LYS C 75 1 7 SHEET 1 A 3 ILE A 54 MET A 56 0 SHEET 2 A 3 VAL A 10 LYS A 14 -1 N VAL A 13 O SER A 55 SHEET 3 A 3 LEU B 125 GLU B 127 1 O GLU B 126 N VAL A 10 SHEET 1 B 6 TYR A 32 TYR A 35 0 SHEET 2 B 6 ARG A 111 TYR A 121 -1 O LEU A 115 N TYR A 32 SHEET 3 B 6 CYS A 62 ALA A 67 -1 N ALA A 67 O GLN A 114 SHEET 4 B 6 VAL A 83 ILE A 84 -1 O ILE A 84 N GLY A 64 SHEET 5 B 6 CYS A 62 ALA A 67 -1 N GLY A 64 O ILE A 84 SHEET 6 B 6 ARG A 111 TYR A 121 -1 O GLN A 114 N ALA A 67 SHEET 1 C 7 ARG C 111 TYR C 121 0 SHEET 2 C 7 ARG B 111 TYR B 121 -1 N ARG B 119 O ARG C 119 SHEET 3 C 7 TYR B 32 TYR B 35 -1 N TYR B 32 O LEU B 115 SHEET 4 C 7 ARG B 111 TYR B 121 -1 O LEU B 115 N TYR B 32 SHEET 5 C 7 CYS B 62 ALA B 67 -1 N ALA B 67 O GLN B 114 SHEET 6 C 7 VAL B 83 ILE B 84 -1 O ILE B 84 N GLY B 64 SHEET 7 C 7 CYS B 62 ALA B 67 -1 N GLY B 64 O ILE B 84 SHEET 1 D 9 ARG B 111 TYR B 121 0 SHEET 2 D 9 ARG A 111 TYR A 121 -1 N TYR A 117 O TYR B 121 SHEET 3 D 9 ARG C 111 TYR C 121 -1 O ARG C 119 N ARG A 119 SHEET 4 D 9 TYR C 32 TYR C 35 -1 N TYR C 32 O LEU C 115 SHEET 5 D 9 ARG C 111 TYR C 121 -1 O LEU C 115 N TYR C 32 SHEET 6 D 9 CYS C 62 ALA C 67 -1 N ARG C 65 O ILE C 116 SHEET 7 D 9 VAL C 83 ILE C 84 -1 O ILE C 84 N GLY C 64 SHEET 8 D 9 CYS C 62 ALA C 67 -1 N GLY C 64 O ILE C 84 SHEET 9 D 9 ARG C 111 TYR C 121 -1 O ILE C 116 N ARG C 65 SHEET 1 E 2 TYR A 40 ILE A 42 0 SHEET 2 E 2 PHE A 104 VAL A 106 -1 O VAL A 106 N TYR A 40 SHEET 1 F 3 GLU A 46 LYS A 51 0 SHEET 2 F 3 GLY A 93 ASN A 98 -1 O VAL A 94 N ILE A 50 SHEET 3 F 3 ILE A 77 GLY A 80 -1 N ASP A 78 O ILE A 97 SHEET 1 G 3 LEU A 125 GLU A 127 0 SHEET 2 G 3 VAL C 10 LYS C 14 1 O VAL C 10 N GLU A 126 SHEET 3 G 3 ILE C 54 MET C 56 -1 O SER C 55 N VAL C 13 SHEET 1 H 3 ILE B 54 MET B 56 0 SHEET 2 H 3 VAL B 10 LYS B 14 -1 N VAL B 13 O SER B 55 SHEET 3 H 3 LEU C 125 GLU C 127 1 O GLU C 126 N VAL B 10 SHEET 1 I 2 TYR B 40 ILE B 42 0 SHEET 2 I 2 PHE B 104 VAL B 106 -1 O VAL B 106 N TYR B 40 SHEET 1 J 3 GLU B 46 LYS B 51 0 SHEET 2 J 3 GLY B 93 ASN B 98 -1 O VAL B 94 N ILE B 50 SHEET 3 J 3 ILE B 77 GLY B 80 -1 N ASP B 78 O ILE B 97 SHEET 1 K 2 TYR C 40 ILE C 42 0 SHEET 2 K 2 PHE C 104 VAL C 106 -1 O PHE C 104 N ILE C 42 SHEET 1 L 3 GLU C 46 LYS C 51 0 SHEET 2 L 3 GLY C 93 ASN C 98 -1 O VAL C 94 N ILE C 50 SHEET 3 L 3 ILE C 77 GLY C 80 -1 N ASP C 78 O ILE C 97 SITE 1 AC1 6 ARG A 65 GLN A 118 TYR B 63 ARG B 65 SITE 2 AC1 6 GLN B 118 GLN C 118 SITE 1 AC2 14 GLY A 82 VAL A 83 ILE A 84 ASP A 85 SITE 2 AC2 14 TYR A 88 GLY A 93 HOH A 304 ARG C 69 SITE 3 AC2 14 SER C 70 GLY C 71 HOH C1222 HOH C1267 SITE 4 AC2 14 HOH C1289 HOH C1292 SITE 1 AC3 11 SER A 70 GLY B 82 VAL B 83 ILE B 84 SITE 2 AC3 11 ASP B 85 TYR B 88 GLY B 93 HOH B 225 SITE 3 AC3 11 HOH C1207 HOH C1291 HOH C1301 SITE 1 AC4 11 ARG B 69 SER B 70 GLY C 82 VAL C 83 SITE 2 AC4 11 ILE C 84 ASP C 85 TYR C 88 GLY C 93 SITE 3 AC4 11 HOH C1204 HOH C1290 HOH C1293 SITE 1 AC5 5 ARG B 119 PHE C 61 CYS C 62 ARG C 119 SITE 2 AC5 5 ILE C 120 SITE 1 AC6 6 GLN A 118 ARG A 119 GLN B 118 ARG B 119 SITE 2 AC6 6 GLN C 118 ARG C 119 CRYST1 119.970 119.970 50.130 90.00 90.00 120.00 P 65 18 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008335 0.004812 0.000000 0.00000 SCALE2 0.000000 0.009625 0.000000 0.00000 SCALE3 0.000000 0.000000 0.019948 0.00000