HEADER HYDROLASE INHIBITOR 18-JAN-07 2OL2 TITLE HIGH RESOLUTION STRUCTURE OF NATIVE PCI IN SPACE GROUP P21 COMPND MOL_ID: 1; COMPND 2 MOLECULE: PLASMA SERINE PROTEASE INHIBITOR; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: PCI, PROTEIN C INHIBITOR, SERPIN A5, PLASMINOGEN ACTIVATOR COMPND 5 INHIBITOR 3, PAI-3, PAI3, ACROSOMAL SERINE PROTEASE INHIBITOR; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: SERPINA5, PCI, PLANH3, PROCI; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: ROSETTA (DE3) PLYSS; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET19B KEYWDS SERPIN, HYDROLASE INHIBITOR EXPDTA X-RAY DIFFRACTION AUTHOR W.LI,J.A.HUNTINGTON REVDAT 5 30-AUG-23 2OL2 1 REMARK SEQADV REVDAT 4 13-JUL-11 2OL2 1 VERSN REVDAT 3 24-FEB-09 2OL2 1 VERSN REVDAT 2 15-MAY-07 2OL2 1 JRNL REVDAT 1 13-MAR-07 2OL2 0 JRNL AUTH W.LI,T.E.ADAMS,M.KJELLBERG,J.STENFLO,J.A.HUNTINGTON JRNL TITL STRUCTURE OF NATIVE PROTEIN C INHIBITOR PROVIDES INSIGHT JRNL TITL 2 INTO ITS MULTIPLE FUNCTIONS. JRNL REF J.BIOL.CHEM. V. 282 13759 2007 JRNL REFN ISSN 0021-9258 JRNL PMID 17337440 JRNL DOI 10.1074/JBC.M701074200 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH J.A.HUNTINGTON,M.KJELLBERG,J.STENFLO REMARK 1 TITL CRYSTAL STRUCTURE OF PROTEIN C INHIBITOR PROVIDES INSIGHTS REMARK 1 TITL 2 INTO HORMONE BINDING AND HEPARIN ACTIVATION REMARK 1 REF STRUCTURE V. 11 205 2003 REMARK 1 REFN ISSN 0969-2126 REMARK 1 PMID 12575940 REMARK 1 DOI 10.1016/S0969-2126(02)00944-9 REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.0 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 26.09 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 1770869.550 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 67.9 REMARK 3 NUMBER OF REFLECTIONS : 40772 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.225 REMARK 3 FREE R VALUE : 0.271 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2074 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.006 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.13 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 19.90 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 1857 REMARK 3 BIN R VALUE (WORKING SET) : 0.2700 REMARK 3 BIN FREE R VALUE : 0.3050 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 5.30 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 104 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.030 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5406 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 6 REMARK 3 SOLVENT ATOMS : 284 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 15.50 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 34.50 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -6.36000 REMARK 3 B22 (A**2) : -2.13000 REMARK 3 B33 (A**2) : 8.49000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.14000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.27 REMARK 3 ESD FROM SIGMAA (A) : 0.24 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.35 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.37 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.007 REMARK 3 BOND ANGLES (DEGREES) : 1.400 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 24.50 REMARK 3 IMPROPER ANGLES (DEGREES) : 0.830 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 1.460 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 2.380 ; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 2.110 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 2.990 ; 2.500 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.36 REMARK 3 BSOL : 81.16 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2OL2 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 19-JAN-07. REMARK 100 THE DEPOSITION ID IS D_1000041269. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 31-AUG-06 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID14-3 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.931 REMARK 200 MONOCHROMATOR : DIAMOND (111), GE(220) REMARK 200 OPTICS : TOROIDAL MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : CCP4 (SCALA) REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 41523 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 44.370 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 67.8 REMARK 200 DATA REDUNDANCY : 1.800 REMARK 200 R MERGE (I) : 0.06400 REMARK 200 R SYM (I) : 0.04600 REMARK 200 FOR THE DATA SET : 9.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.11 REMARK 200 COMPLETENESS FOR SHELL (%) : 19.9 REMARK 200 DATA REDUNDANCY IN SHELL : 1.50 REMARK 200 R MERGE FOR SHELL (I) : 0.21000 REMARK 200 R SYM FOR SHELL (I) : 0.21000 REMARK 200 FOR SHELL : 2.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 2HI9 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.02 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.51 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 6% PEG 3350, 0.04M AMMONIUM REMARK 280 CITRATE,10% GLYCEROL, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE REMARK 280 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 30.03700 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -7 REMARK 465 GLY A -6 REMARK 465 HIS A -5 REMARK 465 HIS A -4 REMARK 465 HIS A -3 REMARK 465 HIS A -2 REMARK 465 HIS A -1 REMARK 465 HIS A 0 REMARK 465 HIS A 1 REMARK 465 HIS A 2 REMARK 465 HIS A 3 REMARK 465 HIS A 4 REMARK 465 SER A 5 REMARK 465 SER A 6 REMARK 465 GLY A 7 REMARK 465 HIS A 8 REMARK 465 ILE A 9 REMARK 465 ASP A 10 REMARK 465 ASP A 11 REMARK 465 ASP A 12 REMARK 465 ASP A 13 REMARK 465 LYS A 14 REMARK 465 HIS A 15 REMARK 465 MET A 16 REMARK 465 VAL A 17 REMARK 465 GLY A 18 REMARK 465 ALA A 19 REMARK 465 THR A 20 REMARK 465 VAL A 21 REMARK 465 ALA A 22 REMARK 465 PRO A 23 REMARK 465 SER A 24 REMARK 465 SER A 25 REMARK 465 ARG A 26 REMARK 465 ARG A 27 REMARK 465 MET B -7 REMARK 465 GLY B -6 REMARK 465 HIS B -5 REMARK 465 HIS B -4 REMARK 465 HIS B -3 REMARK 465 HIS B -2 REMARK 465 HIS B -1 REMARK 465 HIS B 0 REMARK 465 HIS B 1 REMARK 465 HIS B 2 REMARK 465 HIS B 3 REMARK 465 HIS B 4 REMARK 465 SER B 5 REMARK 465 SER B 6 REMARK 465 GLY B 7 REMARK 465 HIS B 8 REMARK 465 ILE B 9 REMARK 465 ASP B 10 REMARK 465 ASP B 11 REMARK 465 ASP B 12 REMARK 465 ASP B 13 REMARK 465 LYS B 14 REMARK 465 HIS B 15 REMARK 465 MET B 16 REMARK 465 VAL B 17 REMARK 465 GLY B 18 REMARK 465 ALA B 19 REMARK 465 THR B 20 REMARK 465 VAL B 21 REMARK 465 ALA B 22 REMARK 465 PRO B 23 REMARK 465 SER B 24 REMARK 465 SER B 25 REMARK 465 ARG B 26 REMARK 465 ARG B 342 REMARK 465 ALA B 343 REMARK 465 ALA B 344 REMARK 465 ALA B 345 REMARK 465 ALA B 346 REMARK 465 THR B 347 REMARK 465 GLY B 348 REMARK 465 THR B 349 REMARK 465 ILE B 350 REMARK 465 PHE B 351 REMARK 465 THR B 352 REMARK 465 PHE B 353 REMARK 465 ARG B 354 REMARK 465 SER B 355 REMARK 465 ALA B 356 REMARK 465 ARG B 357 REMARK 465 LEU B 358 REMARK 465 ASN B 359 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 SER A 43 OG REMARK 470 LEU A 80 CG CD1 CD2 REMARK 470 GLN A 81 CG CD OE1 NE2 REMARK 470 SER A 83 OG REMARK 470 GLU A 87 CG CD OE1 OE2 REMARK 470 GLN A 94 CG CD OE1 NE2 REMARK 470 ASP A 104 CG OD1 OD2 REMARK 470 ARG A 144 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 162 CE NZ REMARK 470 LYS A 170 CG CD CE NZ REMARK 470 SER A 174 OG REMARK 470 ASN A 175 CG OD1 ND2 REMARK 470 LYS A 189 CD CE NZ REMARK 470 HIS A 196 CG ND1 CD2 CE1 NE2 REMARK 470 LYS A 197 CG CD CE NZ REMARK 470 GLN A 222 CG CD OE1 NE2 REMARK 470 LEU A 227 CG CD1 CD2 REMARK 470 ARG A 229 CZ NH1 NH2 REMARK 470 ASN A 230 CG OD1 ND2 REMARK 470 GLN A 241 CG CD OE1 NE2 REMARK 470 LYS A 266 CG CD CE NZ REMARK 470 ARG A 269 CD NE CZ NH1 NH2 REMARK 470 LEU A 272 CG CD1 CD2 REMARK 470 LYS A 273 CG CD CE NZ REMARK 470 LYS A 276 CD CE NZ REMARK 470 THR A 341 OG1 CG2 REMARK 470 ARG A 342 CG CD NE CZ NH1 NH2 REMARK 470 THR A 347 OG1 CG2 REMARK 470 THR A 349 OG1 CG2 REMARK 470 ILE A 350 CG1 CG2 CD1 REMARK 470 ARG A 357 CZ NH1 NH2 REMARK 470 SER A 360 OG REMARK 470 SER B 43 OG REMARK 470 GLN B 81 CG CD OE1 NE2 REMARK 470 LYS B 82 CG CD CE NZ REMARK 470 GLN B 101 CG CD OE1 NE2 REMARK 470 ARG B 103 CG CD NE CZ NH1 NH2 REMARK 470 ASP B 104 CG OD1 OD2 REMARK 470 GLN B 107 CG CD OE1 NE2 REMARK 470 ARG B 144 CD NE CZ NH1 NH2 REMARK 470 LYS B 164 CD CE NZ REMARK 470 VAL B 166 CG1 CG2 REMARK 470 ASP B 173 CG OD1 OD2 REMARK 470 ASN B 175 CB CG OD1 ND2 REMARK 470 LYS B 197 CG CD CE NZ REMARK 470 VAL B 212 CG1 CG2 REMARK 470 GLN B 222 CG CD OE1 NE2 REMARK 470 LEU B 227 CG CD1 CD2 REMARK 470 GLU B 265 CD OE1 OE2 REMARK 470 LYS B 276 CG CD CE NZ REMARK 470 LYS B 277 CD CE NZ REMARK 470 ASN B 322 CG OD1 ND2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OG SER A 52 ND2 ASN A 182 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO A 102 C - N - CA ANGL. DEV. = 9.8 DEGREES REMARK 500 ALA A 346 N - CA - C ANGL. DEV. = 22.1 DEGREES REMARK 500 GLY A 348 N - CA - C ANGL. DEV. = -18.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE A 47 119.44 -165.70 REMARK 500 SER A 66 -126.21 34.44 REMARK 500 ASN A 79 164.50 -15.65 REMARK 500 SER A 84 108.81 9.15 REMARK 500 PRO A 102 157.59 -42.95 REMARK 500 ARG A 103 -131.77 -139.75 REMARK 500 ASP A 145 78.24 -111.19 REMARK 500 ASP A 167 52.32 -144.81 REMARK 500 LEU A 168 -78.68 -37.98 REMARK 500 ARG A 219 121.30 -170.42 REMARK 500 ASP A 221 -175.05 -177.13 REMARK 500 SER A 232 64.14 76.62 REMARK 500 GLN A 241 72.37 -63.58 REMARK 500 LEU A 272 10.23 -66.45 REMARK 500 SER A 339 124.88 -33.10 REMARK 500 ALA A 344 104.48 -55.96 REMARK 500 ALA A 345 -159.96 -64.97 REMARK 500 ALA A 346 -146.23 -162.39 REMARK 500 THR A 349 -1.31 -164.93 REMARK 500 ILE A 350 102.09 -53.70 REMARK 500 THR A 352 142.68 178.02 REMARK 500 SER A 360 -168.66 -102.14 REMARK 500 ASP A 375 -97.37 -101.74 REMARK 500 ASN A 377 -166.49 -126.33 REMARK 500 SER B 66 -135.84 44.85 REMARK 500 SER B 83 149.30 -177.98 REMARK 500 ARG B 103 65.17 -158.51 REMARK 500 ASP B 104 134.72 -23.84 REMARK 500 VAL B 166 -83.07 -68.29 REMARK 500 ASP B 167 71.53 -104.41 REMARK 500 SER B 174 7.07 -65.26 REMARK 500 LYS B 187 118.25 -160.16 REMARK 500 SER B 193 172.05 -56.90 REMARK 500 ARG B 219 130.56 -177.50 REMARK 500 ASP B 221 -166.39 -165.42 REMARK 500 SER B 232 70.59 73.27 REMARK 500 PHE B 275 151.55 -35.89 REMARK 500 ARG B 278 166.63 176.59 REMARK 500 SER B 339 126.19 -33.15 REMARK 500 ARG B 362 131.12 -35.01 REMARK 500 ASP B 375 -129.15 -136.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 650 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2HI9 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF HUMAN NATIVE PROTEIN C INHIBITOR (SPACE GROUP REMARK 900 C2) REMARK 900 RELATED ID: 1LQ8 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF CLEAVED PROTEIN C INHIBITOR DBREF 2OL2 A 17 387 UNP P05154 IPSP_HUMAN 36 406 DBREF 2OL2 B 17 387 UNP P05154 IPSP_HUMAN 36 406 SEQADV 2OL2 MET A -7 UNP P05154 CLONING ARTIFACT SEQADV 2OL2 GLY A -6 UNP P05154 CLONING ARTIFACT SEQADV 2OL2 HIS A -5 UNP P05154 EXPRESSION TAG SEQADV 2OL2 HIS A -4 UNP P05154 EXPRESSION TAG SEQADV 2OL2 HIS A -3 UNP P05154 EXPRESSION TAG SEQADV 2OL2 HIS A -2 UNP P05154 EXPRESSION TAG SEQADV 2OL2 HIS A -1 UNP P05154 EXPRESSION TAG SEQADV 2OL2 HIS A 0 UNP P05154 EXPRESSION TAG SEQADV 2OL2 HIS A 1 UNP P05154 EXPRESSION TAG SEQADV 2OL2 HIS A 2 UNP P05154 EXPRESSION TAG SEQADV 2OL2 HIS A 3 UNP P05154 EXPRESSION TAG SEQADV 2OL2 HIS A 4 UNP P05154 EXPRESSION TAG SEQADV 2OL2 SER A 5 UNP P05154 CLONING ARTIFACT SEQADV 2OL2 SER A 6 UNP P05154 CLONING ARTIFACT SEQADV 2OL2 GLY A 7 UNP P05154 CLONING ARTIFACT SEQADV 2OL2 HIS A 8 UNP P05154 CLONING ARTIFACT SEQADV 2OL2 ILE A 9 UNP P05154 CLONING ARTIFACT SEQADV 2OL2 ASP A 10 UNP P05154 CLONING ARTIFACT SEQADV 2OL2 ASP A 11 UNP P05154 CLONING ARTIFACT SEQADV 2OL2 ASP A 12 UNP P05154 CLONING ARTIFACT SEQADV 2OL2 ASP A 13 UNP P05154 CLONING ARTIFACT SEQADV 2OL2 LYS A 14 UNP P05154 CLONING ARTIFACT SEQADV 2OL2 HIS A 15 UNP P05154 CLONING ARTIFACT SEQADV 2OL2 MET A 16 UNP P05154 CLONING ARTIFACT SEQADV 2OL2 MET B -7 UNP P05154 CLONING ARTIFACT SEQADV 2OL2 GLY B -6 UNP P05154 CLONING ARTIFACT SEQADV 2OL2 HIS B -5 UNP P05154 EXPRESSION TAG SEQADV 2OL2 HIS B -4 UNP P05154 EXPRESSION TAG SEQADV 2OL2 HIS B -3 UNP P05154 EXPRESSION TAG SEQADV 2OL2 HIS B -2 UNP P05154 EXPRESSION TAG SEQADV 2OL2 HIS B -1 UNP P05154 EXPRESSION TAG SEQADV 2OL2 HIS B 0 UNP P05154 EXPRESSION TAG SEQADV 2OL2 HIS B 1 UNP P05154 EXPRESSION TAG SEQADV 2OL2 HIS B 2 UNP P05154 EXPRESSION TAG SEQADV 2OL2 HIS B 3 UNP P05154 EXPRESSION TAG SEQADV 2OL2 HIS B 4 UNP P05154 EXPRESSION TAG SEQADV 2OL2 SER B 5 UNP P05154 CLONING ARTIFACT SEQADV 2OL2 SER B 6 UNP P05154 CLONING ARTIFACT SEQADV 2OL2 GLY B 7 UNP P05154 CLONING ARTIFACT SEQADV 2OL2 HIS B 8 UNP P05154 CLONING ARTIFACT SEQADV 2OL2 ILE B 9 UNP P05154 CLONING ARTIFACT SEQADV 2OL2 ASP B 10 UNP P05154 CLONING ARTIFACT SEQADV 2OL2 ASP B 11 UNP P05154 CLONING ARTIFACT SEQADV 2OL2 ASP B 12 UNP P05154 CLONING ARTIFACT SEQADV 2OL2 ASP B 13 UNP P05154 CLONING ARTIFACT SEQADV 2OL2 LYS B 14 UNP P05154 CLONING ARTIFACT SEQADV 2OL2 HIS B 15 UNP P05154 CLONING ARTIFACT SEQADV 2OL2 MET B 16 UNP P05154 CLONING ARTIFACT SEQRES 1 A 395 MET GLY HIS HIS HIS HIS HIS HIS HIS HIS HIS HIS SER SEQRES 2 A 395 SER GLY HIS ILE ASP ASP ASP ASP LYS HIS MET VAL GLY SEQRES 3 A 395 ALA THR VAL ALA PRO SER SER ARG ARG ASP PHE THR PHE SEQRES 4 A 395 ASP LEU TYR ARG ALA LEU ALA SER ALA ALA PRO SER GLN SEQRES 5 A 395 ASN ILE PHE PHE SER PRO VAL SER ILE SER MET SER LEU SEQRES 6 A 395 ALA MET LEU SER LEU GLY ALA GLY SER SER THR LYS MET SEQRES 7 A 395 GLN ILE LEU GLU GLY LEU GLY LEU ASN LEU GLN LYS SER SEQRES 8 A 395 SER GLU LYS GLU LEU HIS ARG GLY PHE GLN GLN LEU LEU SEQRES 9 A 395 GLN GLU LEU ASN GLN PRO ARG ASP GLY PHE GLN LEU SER SEQRES 10 A 395 LEU GLY ASN ALA LEU PHE THR ASP LEU VAL VAL ASP LEU SEQRES 11 A 395 GLN ASP THR PHE VAL SER ALA MET LYS THR LEU TYR LEU SEQRES 12 A 395 ALA ASP THR PHE PRO THR ASN PHE ARG ASP SER ALA GLY SEQRES 13 A 395 ALA MET LYS GLN ILE ASN ASP TYR VAL ALA LYS GLN THR SEQRES 14 A 395 LYS GLY LYS ILE VAL ASP LEU LEU LYS ASN LEU ASP SER SEQRES 15 A 395 ASN ALA VAL VAL ILE MET VAL ASN TYR ILE PHE PHE LYS SEQRES 16 A 395 ALA LYS TRP GLU THR SER PHE ASN HIS LYS GLY THR GLN SEQRES 17 A 395 GLU GLN ASP PHE TYR VAL THR SER GLU THR VAL VAL ARG SEQRES 18 A 395 VAL PRO MET MET SER ARG GLU ASP GLN TYR HIS TYR LEU SEQRES 19 A 395 LEU ASP ARG ASN LEU SER CYS ARG VAL VAL GLY VAL PRO SEQRES 20 A 395 TYR GLN GLY ASN ALA THR ALA LEU PHE ILE LEU PRO SER SEQRES 21 A 395 GLU GLY LYS MET GLN GLN VAL GLU ASN GLY LEU SER GLU SEQRES 22 A 395 LYS THR LEU ARG LYS TRP LEU LYS MET PHE LYS LYS ARG SEQRES 23 A 395 GLN LEU GLU LEU TYR LEU PRO LYS PHE SER ILE GLU GLY SEQRES 24 A 395 SER TYR GLN LEU GLU LYS VAL LEU PRO SER LEU GLY ILE SEQRES 25 A 395 SER ASN VAL PHE THR SER HIS ALA ASP LEU SER GLY ILE SEQRES 26 A 395 SER ASN HIS SER ASN ILE GLN VAL SER GLU MET VAL HIS SEQRES 27 A 395 LYS ALA VAL VAL GLU VAL ASP GLU SER GLY THR ARG ALA SEQRES 28 A 395 ALA ALA ALA THR GLY THR ILE PHE THR PHE ARG SER ALA SEQRES 29 A 395 ARG LEU ASN SER GLN ARG LEU VAL PHE ASN ARG PRO PHE SEQRES 30 A 395 LEU MET PHE ILE VAL ASP ASN ASN ILE LEU PHE LEU GLY SEQRES 31 A 395 LYS VAL ASN ARG PRO SEQRES 1 B 395 MET GLY HIS HIS HIS HIS HIS HIS HIS HIS HIS HIS SER SEQRES 2 B 395 SER GLY HIS ILE ASP ASP ASP ASP LYS HIS MET VAL GLY SEQRES 3 B 395 ALA THR VAL ALA PRO SER SER ARG ARG ASP PHE THR PHE SEQRES 4 B 395 ASP LEU TYR ARG ALA LEU ALA SER ALA ALA PRO SER GLN SEQRES 5 B 395 ASN ILE PHE PHE SER PRO VAL SER ILE SER MET SER LEU SEQRES 6 B 395 ALA MET LEU SER LEU GLY ALA GLY SER SER THR LYS MET SEQRES 7 B 395 GLN ILE LEU GLU GLY LEU GLY LEU ASN LEU GLN LYS SER SEQRES 8 B 395 SER GLU LYS GLU LEU HIS ARG GLY PHE GLN GLN LEU LEU SEQRES 9 B 395 GLN GLU LEU ASN GLN PRO ARG ASP GLY PHE GLN LEU SER SEQRES 10 B 395 LEU GLY ASN ALA LEU PHE THR ASP LEU VAL VAL ASP LEU SEQRES 11 B 395 GLN ASP THR PHE VAL SER ALA MET LYS THR LEU TYR LEU SEQRES 12 B 395 ALA ASP THR PHE PRO THR ASN PHE ARG ASP SER ALA GLY SEQRES 13 B 395 ALA MET LYS GLN ILE ASN ASP TYR VAL ALA LYS GLN THR SEQRES 14 B 395 LYS GLY LYS ILE VAL ASP LEU LEU LYS ASN LEU ASP SER SEQRES 15 B 395 ASN ALA VAL VAL ILE MET VAL ASN TYR ILE PHE PHE LYS SEQRES 16 B 395 ALA LYS TRP GLU THR SER PHE ASN HIS LYS GLY THR GLN SEQRES 17 B 395 GLU GLN ASP PHE TYR VAL THR SER GLU THR VAL VAL ARG SEQRES 18 B 395 VAL PRO MET MET SER ARG GLU ASP GLN TYR HIS TYR LEU SEQRES 19 B 395 LEU ASP ARG ASN LEU SER CYS ARG VAL VAL GLY VAL PRO SEQRES 20 B 395 TYR GLN GLY ASN ALA THR ALA LEU PHE ILE LEU PRO SER SEQRES 21 B 395 GLU GLY LYS MET GLN GLN VAL GLU ASN GLY LEU SER GLU SEQRES 22 B 395 LYS THR LEU ARG LYS TRP LEU LYS MET PHE LYS LYS ARG SEQRES 23 B 395 GLN LEU GLU LEU TYR LEU PRO LYS PHE SER ILE GLU GLY SEQRES 24 B 395 SER TYR GLN LEU GLU LYS VAL LEU PRO SER LEU GLY ILE SEQRES 25 B 395 SER ASN VAL PHE THR SER HIS ALA ASP LEU SER GLY ILE SEQRES 26 B 395 SER ASN HIS SER ASN ILE GLN VAL SER GLU MET VAL HIS SEQRES 27 B 395 LYS ALA VAL VAL GLU VAL ASP GLU SER GLY THR ARG ALA SEQRES 28 B 395 ALA ALA ALA THR GLY THR ILE PHE THR PHE ARG SER ALA SEQRES 29 B 395 ARG LEU ASN SER GLN ARG LEU VAL PHE ASN ARG PRO PHE SEQRES 30 B 395 LEU MET PHE ILE VAL ASP ASN ASN ILE LEU PHE LEU GLY SEQRES 31 B 395 LYS VAL ASN ARG PRO HET GOL A 650 6 HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 GOL C3 H8 O3 FORMUL 4 HOH *284(H2 O) HELIX 1 1 ASP A 28 ALA A 41 1 14 HELIX 2 2 SER A 49 SER A 61 1 13 HELIX 3 3 GLY A 65 GLY A 77 1 13 HELIX 4 4 ASN A 79 SER A 83 5 5 HELIX 5 5 GLU A 85 ASN A 100 1 16 HELIX 6 6 GLN A 123 LEU A 135 1 13 HELIX 7 7 ASP A 145 THR A 161 1 17 HELIX 8 8 LYS A 255 LEU A 263 1 9 HELIX 9 9 SER A 264 PHE A 275 1 12 HELIX 10 10 GLU A 296 GLY A 303 5 8 HELIX 11 11 SER A 305 THR A 309 5 5 HELIX 12 12 ASP B 28 ALA B 41 1 14 HELIX 13 13 SER B 49 SER B 61 1 13 HELIX 14 14 LEU B 62 ALA B 64 5 3 HELIX 15 15 GLY B 65 LEU B 76 1 12 HELIX 16 16 SER B 84 ASN B 100 1 17 HELIX 17 17 GLN B 123 LEU B 135 1 13 HELIX 18 18 ASP B 145 THR B 161 1 17 HELIX 19 19 ASN B 195 THR B 199 5 5 HELIX 20 20 LYS B 255 GLY B 262 1 8 HELIX 21 21 SER B 264 PHE B 275 1 12 HELIX 22 22 GLU B 296 GLY B 303 5 8 HELIX 23 23 SER B 305 THR B 309 5 5 SHEET 1 A 7 ILE A 46 PHE A 48 0 SHEET 2 A 7 ILE A 378 VAL A 384 -1 O LEU A 381 N PHE A 48 SHEET 3 A 7 PHE A 369 VAL A 374 -1 N PHE A 369 O VAL A 384 SHEET 4 A 7 THR A 245 PRO A 251 -1 N ILE A 249 O LEU A 370 SHEET 5 A 7 CYS A 233 PRO A 239 -1 N ARG A 234 O LEU A 250 SHEET 6 A 7 VAL A 211 ASP A 228 -1 N LEU A 226 O VAL A 235 SHEET 7 A 7 GLN A 200 TYR A 205 -1 N GLN A 200 O MET A 216 SHEET 1 B 8 ILE A 46 PHE A 48 0 SHEET 2 B 8 ILE A 378 VAL A 384 -1 O LEU A 381 N PHE A 48 SHEET 3 B 8 PHE A 369 VAL A 374 -1 N PHE A 369 O VAL A 384 SHEET 4 B 8 THR A 245 PRO A 251 -1 N ILE A 249 O LEU A 370 SHEET 5 B 8 CYS A 233 PRO A 239 -1 N ARG A 234 O LEU A 250 SHEET 6 B 8 VAL A 211 ASP A 228 -1 N LEU A 226 O VAL A 235 SHEET 7 B 8 LYS A 276 PRO A 285 -1 O LYS A 276 N TYR A 225 SHEET 8 B 8 GLN A 361 VAL A 364 1 O GLN A 361 N GLU A 281 SHEET 1 C 5 ASP A 137 THR A 141 0 SHEET 2 C 5 GLN A 107 ASP A 117 1 N THR A 116 O THR A 141 SHEET 3 C 5 VAL A 178 LYS A 187 -1 O ILE A 179 N PHE A 115 SHEET 4 C 5 GLU A 327 VAL A 336 1 O GLU A 327 N MET A 180 SHEET 5 C 5 PHE A 287 GLN A 294 -1 N PHE A 287 O VAL A 336 SHEET 1 D 2 TRP A 190 THR A 192 0 SHEET 2 D 2 GLY A 340 ARG A 342 1 O THR A 341 N TRP A 190 SHEET 1 E 6 ILE B 46 PHE B 48 0 SHEET 2 E 6 ILE B 378 VAL B 384 -1 O LYS B 383 N ILE B 46 SHEET 3 E 6 PHE B 369 VAL B 374 -1 N PHE B 369 O VAL B 384 SHEET 4 E 6 THR B 245 PRO B 251 -1 N LEU B 247 O PHE B 372 SHEET 5 E 6 CYS B 233 PRO B 239 -1 N VAL B 238 O ALA B 246 SHEET 6 E 6 HIS B 224 ASP B 228 -1 N LEU B 226 O VAL B 235 SHEET 1 F 5 ASP B 137 THR B 141 0 SHEET 2 F 5 PHE B 106 ASP B 117 1 N LEU B 114 O PHE B 139 SHEET 3 F 5 VAL B 178 ALA B 188 -1 O ILE B 179 N PHE B 115 SHEET 4 F 5 GLU B 327 VAL B 336 1 O VAL B 329 N MET B 180 SHEET 5 F 5 PHE B 287 GLN B 294 -1 N TYR B 293 O HIS B 330 SHEET 1 G 4 GLN B 200 TYR B 205 0 SHEET 2 G 4 VAL B 211 GLN B 222 -1 O VAL B 214 N GLN B 202 SHEET 3 G 4 GLN B 279 PRO B 285 -1 O LEU B 284 N MET B 217 SHEET 4 G 4 LEU B 363 VAL B 364 1 O LEU B 363 N TYR B 283 SITE 1 AC1 8 LEU A 37 ALA A 40 ALA A 41 ASN A 45 SITE 2 AC1 8 ILE A 46 TYR A 293 HOH A 664 HOH A 735 CRYST1 56.017 60.074 133.171 90.00 93.28 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017852 0.000000 0.001023 0.00000 SCALE2 0.000000 0.016646 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007521 0.00000