data_2OL9 # _entry.id 2OL9 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.389 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 2OL9 pdb_00002ol9 10.2210/pdb2ol9/pdb RCSB RCSB041276 ? ? WWPDB D_1000041276 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2007-01-30 2 'Structure model' 1 1 2008-05-01 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2017-10-18 5 'Structure model' 1 4 2018-01-24 6 'Structure model' 1 5 2023-12-27 7 'Structure model' 1 6 2024-04-03 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Refinement description' 4 5 'Structure model' 'Structure summary' 5 6 'Structure model' 'Data collection' 6 6 'Structure model' 'Database references' 7 7 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' software 2 5 'Structure model' audit_author 3 6 'Structure model' chem_comp_atom 4 6 'Structure model' chem_comp_bond 5 6 'Structure model' database_2 6 7 'Structure model' pdbx_initial_refinement_model # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 5 'Structure model' '_audit_author.name' 2 6 'Structure model' '_database_2.pdbx_DOI' 3 6 'Structure model' '_database_2.pdbx_database_accession' # _pdbx_database_status.entry_id 2OL9 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2007-01-18 _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_nmr_data ? # _pdbx_database_related.db_name PDB _pdbx_database_related.db_id 2OKZ _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Apostol, M.A.' 1 'Sawaya, M.R.' 2 'Eisenberg, D.' 3 # _citation.id primary _citation.title 'Atomic structures of amyloid cross-beta spines reveal varied steric zippers.' _citation.journal_abbrev Nature _citation.journal_volume 447 _citation.page_first 453 _citation.page_last 457 _citation.year 2007 _citation.journal_id_ASTM NATUAS _citation.country UK _citation.journal_id_ISSN 0028-0836 _citation.journal_id_CSD 0006 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 17468747 _citation.pdbx_database_id_DOI 10.1038/nature05695 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Sawaya, M.R.' 1 ? primary 'Sambashivan, S.' 2 ? primary 'Nelson, R.' 3 ? primary 'Ivanova, M.I.' 4 ? primary 'Sievers, S.A.' 5 ? primary 'Apostol, M.I.' 6 ? primary 'Thompson, M.J.' 7 ? primary 'Balbirnie, M.' 8 ? primary 'Wiltzius, J.J.' 9 ? primary 'McFarlane, H.T.' 10 ? primary 'Madsen, A.O.' 11 ? primary 'Riekel, C.' 12 ? primary 'Eisenberg, D.' 13 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn 'peptide from human prion' 722.704 1 ? ? 'residues 170-175' ? 2 water nat water 18.015 5 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code SNQNNF _entity_poly.pdbx_seq_one_letter_code_can SNQNNF _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # _pdbx_entity_nonpoly.entity_id 2 _pdbx_entity_nonpoly.name water _pdbx_entity_nonpoly.comp_id HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 SER n 1 2 ASN n 1 3 GLN n 1 4 ASN n 1 5 ASN n 1 6 PHE n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num ? _pdbx_entity_src_syn.pdbx_end_seq_num ? _pdbx_entity_src_syn.organism_scientific ? _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id ? _pdbx_entity_src_syn.details 'This sequence is taken from residues 170-175 of human prion' # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 HOH non-polymer . WATER ? 'H2 O' 18.015 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 SER 1 1 1 SER SER A . n A 1 2 ASN 2 2 2 ASN ASN A . n A 1 3 GLN 3 3 3 GLN GLN A . n A 1 4 ASN 4 4 4 ASN ASN A . n A 1 5 ASN 5 5 5 ASN ASN A . n A 1 6 PHE 6 6 6 PHE PHE A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HOH 1 7 1 HOH HOH A . B 2 HOH 2 8 2 HOH HOH A . B 2 HOH 3 9 3 HOH HOH A . B 2 HOH 4 10 4 HOH HOH A . B 2 HOH 5 11 5 HOH HOH A . # loop_ _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id _software.pdbx_ordinal DENZO . ? package 'Zbyszek Otwinowski' zbyszek@mix.swmed.edu 'data reduction' http://www.lnls.br/infra/linhasluz/denzo-hkl.htm ? ? 1 SCALEPACK . ? package 'Zbyszek Otwinowski' zbyszek@mix.swmed.edu 'data scaling' http://www.lnls.br/infra/linhasluz/denzo-hkl.htm ? ? 2 PHASER . ? other 'R. J. Read' cimr-phaser@lists.cam.ac.uk phasing http://www-structmed.cimr.cam.ac.uk/phaser/ ? ? 3 REFMAC . ? program 'Murshudov, G.N.' ccp4@dl.ac.uk refinement http://www.ccp4.ac.uk/main.html Fortran_77 ? 4 PDB_EXTRACT 2.000 'April. 3, 2006' package PDB sw-help@rcsb.rutgers.edu 'data extraction' http://pdb.rutgers.edu/software/ C++ ? 5 BOS . ? ? ? ? 'data collection' ? ? ? 6 # _cell.length_a 14.002 _cell.length_b 4.879 _cell.length_c 15.100 _cell.angle_alpha 75.230 _cell.angle_beta 75.880 _cell.angle_gamma 78.890 _cell.entry_id 2OL9 _cell.pdbx_unique_axis ? _cell.Z_PDB 1 _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.space_group_name_H-M 'P 1' _symmetry.entry_id 2OL9 _symmetry.Int_Tables_number 1 _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.space_group_name_Hall ? # _exptl.crystals_number 1 _exptl.entry_id 2OL9 _exptl.method 'X-RAY DIFFRACTION' # _exptl_crystal.id 1 _exptl_crystal.density_Matthews ? _exptl_crystal.density_meas ? _exptl_crystal.density_percent_sol ? _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.pH 7.0 _exptl_crystal_grow.temp 298 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pdbx_details '200 mM Hepes, pH 7.0, VAPOR DIFFUSION, HANGING DROP, temperature 298K' _exptl_crystal_grow.pdbx_pH_range . # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 315' _diffrn_detector.pdbx_collection_date 2006-09-14 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.88560 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'ALS BEAMLINE 8.2.2' _diffrn_source.pdbx_wavelength 0.88560 _diffrn_source.pdbx_wavelength_list ? _diffrn_source.pdbx_synchrotron_site ALS _diffrn_source.pdbx_synchrotron_beamline 8.2.2 # _reflns.entry_id 2OL9 _reflns.d_resolution_high 0.850 _reflns.d_resolution_low 90.000 _reflns.number_obs 2681 _reflns.pdbx_Rmerge_I_obs 0.036 _reflns.pdbx_netI_over_sigmaI 48.700 _reflns.pdbx_chi_squared 1.195 _reflns.pdbx_redundancy 3.600 _reflns.percent_possible_obs 82.100 _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I -3 _reflns.number_all 2681 _reflns.pdbx_Rsym_value ? _reflns.B_iso_Wilson_estimate 4.4 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # loop_ _reflns_shell.d_res_high _reflns_shell.d_res_low _reflns_shell.number_measured_obs _reflns_shell.number_measured_all _reflns_shell.number_unique_obs _reflns_shell.Rmerge_I_obs _reflns_shell.meanI_over_sigI_obs _reflns_shell.pdbx_Rsym_value _reflns_shell.pdbx_chi_squared _reflns_shell.pdbx_redundancy _reflns_shell.percent_possible_obs _reflns_shell.number_unique_all _reflns_shell.percent_possible_all _reflns_shell.pdbx_diffrn_id _reflns_shell.pdbx_ordinal 0.85 0.88 ? ? ? 0.078 ? ? 1.139 2.30 ? 107 33.50 ? 1 0.88 0.92 ? ? ? 0.078 ? ? 1.200 2.70 ? 175 51.90 ? 2 0.92 0.96 ? ? ? 0.067 ? ? 1.301 3.30 ? 267 79.50 ? 3 0.96 1.01 ? ? ? 0.055 ? ? 1.196 3.60 ? 304 92.40 ? 4 1.01 1.07 ? ? ? 0.048 ? ? 1.387 3.80 ? 309 99.70 ? 5 1.07 1.15 ? ? ? 0.036 ? ? 1.143 3.70 ? 293 90.20 ? 6 1.15 1.27 ? ? ? 0.04 ? ? 1.166 3.80 ? 282 85.50 ? 7 1.27 1.45 ? ? ? 0.037 ? ? 1.150 3.80 ? 322 100.00 ? 8 1.45 1.83 ? ? ? 0.034 ? ? 1.186 3.70 ? 309 93.10 ? 9 1.83 90.00 ? ? ? 0.027 ? ? 1.070 3.80 ? 313 96.00 ? 10 # _refine.entry_id 2OL9 _refine.ls_d_res_high 0.850 _refine.ls_d_res_low 14.290 _refine.pdbx_ls_sigma_F 0.00 _refine.ls_percent_reflns_obs 82.110 _refine.ls_number_reflns_obs 2680 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_R_Free_selection_details RANDOM _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS' _refine.ls_R_factor_obs 0.073 _refine.ls_R_factor_R_work 0.073 _refine.ls_R_factor_R_free 0.078 _refine.ls_percent_reflns_R_free 5.000 _refine.ls_number_reflns_R_free 134 _refine.B_iso_mean 1.335 _refine.aniso_B[1][1] 0.020 _refine.aniso_B[2][2] -0.040 _refine.aniso_B[3][3] 0.020 _refine.aniso_B[1][2] -0.030 _refine.aniso_B[1][3] -0.060 _refine.aniso_B[2][3] 0.060 _refine.correlation_coeff_Fo_to_Fc 0.992 _refine.correlation_coeff_Fo_to_Fc_free 0.989 _refine.pdbx_overall_ESU_R 0.011 _refine.pdbx_overall_ESU_R_Free 0.011 _refine.overall_SU_ML 0.007 _refine.overall_SU_B 0.242 _refine.solvent_model_details MASK _refine.pdbx_solvent_vdw_probe_radii 1.400 _refine.pdbx_solvent_ion_probe_radii 0.800 _refine.pdbx_solvent_shrinkage_radii 0.800 _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_ls_sigma_I ? _refine.ls_number_reflns_all 2680 _refine.ls_R_factor_all 0.073 _refine.ls_redundancy_reflns_obs ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_starting_model 'idealized 6 residue beta strand' _refine.pdbx_stereochem_target_val_spec_case ? _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.pdbx_isotropic_thermal_model ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 51 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 5 _refine_hist.number_atoms_total 56 _refine_hist.d_res_high 0.850 _refine_hist.d_res_low 14.290 # loop_ _refine_ls_restr.type _refine_ls_restr.number _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 51 0.005 0.021 ? 'X-RAY DIFFRACTION' ? r_bond_other_d 30 0.001 0.020 ? 'X-RAY DIFFRACTION' ? r_angle_refined_deg 68 1.019 1.828 ? 'X-RAY DIFFRACTION' ? r_angle_other_deg 73 0.505 3.000 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 5 7.839 5.000 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 5 52.080 28.000 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 7 8.571 15.000 ? 'X-RAY DIFFRACTION' ? r_chiral_restr 6 0.073 0.200 ? 'X-RAY DIFFRACTION' ? r_gen_planes_refined 62 0.003 0.020 ? 'X-RAY DIFFRACTION' ? r_gen_planes_other 10 0.000 0.020 ? 'X-RAY DIFFRACTION' ? r_nbd_refined 4 0.081 0.200 ? 'X-RAY DIFFRACTION' ? r_nbd_other 16 0.190 0.200 ? 'X-RAY DIFFRACTION' ? r_nbtor_refined 20 0.176 0.200 ? 'X-RAY DIFFRACTION' ? r_nbtor_other 31 0.072 0.200 ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined 2 0.034 0.200 ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_other 10 0.190 0.200 ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined 1 0.081 0.200 ? 'X-RAY DIFFRACTION' ? r_mcbond_it 39 0.394 1.500 ? 'X-RAY DIFFRACTION' ? r_mcbond_other 11 0.073 1.500 ? 'X-RAY DIFFRACTION' ? r_mcangle_it 47 0.484 2.000 ? 'X-RAY DIFFRACTION' ? r_scbond_it 24 0.651 3.000 ? 'X-RAY DIFFRACTION' ? r_scangle_it 21 0.857 4.500 ? 'X-RAY DIFFRACTION' ? r_rigid_bond_restr 107 0.688 3.000 ? 'X-RAY DIFFRACTION' ? r_sphericity_free 5 1.686 3.000 ? 'X-RAY DIFFRACTION' ? r_sphericity_bonded 81 0.569 3.000 ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.d_res_high 0.850 _refine_ls_shell.d_res_low 0.873 _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.percent_reflns_obs 31.400 _refine_ls_shell.number_reflns_R_work 72 _refine_ls_shell.R_factor_all ? _refine_ls_shell.R_factor_R_work 0.175 _refine_ls_shell.R_factor_R_free 0.052 _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 4 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.number_reflns_all ? _refine_ls_shell.number_reflns_obs 76 _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 2OL9 _struct.title 'Peptide corresponding to residues 170-175 of human prion' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2OL9 _struct_keywords.pdbx_keywords 'PROTEIN FIBRIL' _struct_keywords.text 'steric zipper, beta sheet, PROTEIN FIBRIL' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? # _struct_ref.id 1 _struct_ref.entity_id 1 _struct_ref.db_name PDB _struct_ref.db_code 2OL9 _struct_ref.pdbx_db_accession 2OL9 _struct_ref.pdbx_db_isoform ? _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 2OL9 _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 6 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession 2OL9 _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 6 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 6 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 _pdbx_struct_assembly_gen.asym_id_list A,B # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 1_565 x,y+1,z 1.0000000000 0.0000000000 0.0000000000 0.9401502764 0.0000000000 1.0000000000 0.0000000000 4.7875628934 0.0000000000 0.0000000000 1.0000000000 0.0000000000 # _diffrn_reflns.diffrn_id 1 _diffrn_reflns.pdbx_d_res_high 0.850 _diffrn_reflns.pdbx_d_res_low 90.000 _diffrn_reflns.pdbx_number_obs 2681 _diffrn_reflns.pdbx_Rmerge_I_obs 0.036 _diffrn_reflns.pdbx_Rsym_value ? _diffrn_reflns.pdbx_chi_squared 1.20 _diffrn_reflns.av_sigmaI_over_netI 48.70 _diffrn_reflns.pdbx_redundancy 3.60 _diffrn_reflns.pdbx_percent_possible_obs 82.10 _diffrn_reflns.number 9598 _diffrn_reflns.pdbx_observed_criterion ? _diffrn_reflns.limit_h_max ? _diffrn_reflns.limit_h_min ? _diffrn_reflns.limit_k_max ? _diffrn_reflns.limit_k_min ? _diffrn_reflns.limit_l_max ? _diffrn_reflns.limit_l_min ? # loop_ _pdbx_diffrn_reflns_shell.diffrn_id _pdbx_diffrn_reflns_shell.d_res_high _pdbx_diffrn_reflns_shell.d_res_low _pdbx_diffrn_reflns_shell.number_obs _pdbx_diffrn_reflns_shell.rejects _pdbx_diffrn_reflns_shell.Rmerge_I_obs _pdbx_diffrn_reflns_shell.Rsym_value _pdbx_diffrn_reflns_shell.chi_squared _pdbx_diffrn_reflns_shell.redundancy _pdbx_diffrn_reflns_shell.percent_possible_obs 1 1.83 90.00 ? ? 0.027 ? 1.070 3.80 96.00 1 1.45 1.83 ? ? 0.034 ? 1.186 3.70 93.10 1 1.27 1.45 ? ? 0.037 ? 1.150 3.80 100.00 1 1.15 1.27 ? ? 0.040 ? 1.166 3.80 85.50 1 1.07 1.15 ? ? 0.036 ? 1.143 3.70 90.20 1 1.01 1.07 ? ? 0.048 ? 1.387 3.80 99.70 1 0.96 1.01 ? ? 0.055 ? 1.196 3.60 92.40 1 0.92 0.96 ? ? 0.067 ? 1.301 3.30 79.50 1 0.88 0.92 ? ? 0.078 ? 1.200 2.70 51.90 1 0.85 0.88 ? ? 0.078 ? 1.139 2.30 33.50 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ASN N N N N 1 ASN CA C N S 2 ASN C C N N 3 ASN O O N N 4 ASN CB C N N 5 ASN CG C N N 6 ASN OD1 O N N 7 ASN ND2 N N N 8 ASN OXT O N N 9 ASN H H N N 10 ASN H2 H N N 11 ASN HA H N N 12 ASN HB2 H N N 13 ASN HB3 H N N 14 ASN HD21 H N N 15 ASN HD22 H N N 16 ASN HXT H N N 17 GLN N N N N 18 GLN CA C N S 19 GLN C C N N 20 GLN O O N N 21 GLN CB C N N 22 GLN CG C N N 23 GLN CD C N N 24 GLN OE1 O N N 25 GLN NE2 N N N 26 GLN OXT O N N 27 GLN H H N N 28 GLN H2 H N N 29 GLN HA H N N 30 GLN HB2 H N N 31 GLN HB3 H N N 32 GLN HG2 H N N 33 GLN HG3 H N N 34 GLN HE21 H N N 35 GLN HE22 H N N 36 GLN HXT H N N 37 HOH O O N N 38 HOH H1 H N N 39 HOH H2 H N N 40 PHE N N N N 41 PHE CA C N S 42 PHE C C N N 43 PHE O O N N 44 PHE CB C N N 45 PHE CG C Y N 46 PHE CD1 C Y N 47 PHE CD2 C Y N 48 PHE CE1 C Y N 49 PHE CE2 C Y N 50 PHE CZ C Y N 51 PHE OXT O N N 52 PHE H H N N 53 PHE H2 H N N 54 PHE HA H N N 55 PHE HB2 H N N 56 PHE HB3 H N N 57 PHE HD1 H N N 58 PHE HD2 H N N 59 PHE HE1 H N N 60 PHE HE2 H N N 61 PHE HZ H N N 62 PHE HXT H N N 63 SER N N N N 64 SER CA C N S 65 SER C C N N 66 SER O O N N 67 SER CB C N N 68 SER OG O N N 69 SER OXT O N N 70 SER H H N N 71 SER H2 H N N 72 SER HA H N N 73 SER HB2 H N N 74 SER HB3 H N N 75 SER HG H N N 76 SER HXT H N N 77 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ASN N CA sing N N 1 ASN N H sing N N 2 ASN N H2 sing N N 3 ASN CA C sing N N 4 ASN CA CB sing N N 5 ASN CA HA sing N N 6 ASN C O doub N N 7 ASN C OXT sing N N 8 ASN CB CG sing N N 9 ASN CB HB2 sing N N 10 ASN CB HB3 sing N N 11 ASN CG OD1 doub N N 12 ASN CG ND2 sing N N 13 ASN ND2 HD21 sing N N 14 ASN ND2 HD22 sing N N 15 ASN OXT HXT sing N N 16 GLN N CA sing N N 17 GLN N H sing N N 18 GLN N H2 sing N N 19 GLN CA C sing N N 20 GLN CA CB sing N N 21 GLN CA HA sing N N 22 GLN C O doub N N 23 GLN C OXT sing N N 24 GLN CB CG sing N N 25 GLN CB HB2 sing N N 26 GLN CB HB3 sing N N 27 GLN CG CD sing N N 28 GLN CG HG2 sing N N 29 GLN CG HG3 sing N N 30 GLN CD OE1 doub N N 31 GLN CD NE2 sing N N 32 GLN NE2 HE21 sing N N 33 GLN NE2 HE22 sing N N 34 GLN OXT HXT sing N N 35 HOH O H1 sing N N 36 HOH O H2 sing N N 37 PHE N CA sing N N 38 PHE N H sing N N 39 PHE N H2 sing N N 40 PHE CA C sing N N 41 PHE CA CB sing N N 42 PHE CA HA sing N N 43 PHE C O doub N N 44 PHE C OXT sing N N 45 PHE CB CG sing N N 46 PHE CB HB2 sing N N 47 PHE CB HB3 sing N N 48 PHE CG CD1 doub Y N 49 PHE CG CD2 sing Y N 50 PHE CD1 CE1 sing Y N 51 PHE CD1 HD1 sing N N 52 PHE CD2 CE2 doub Y N 53 PHE CD2 HD2 sing N N 54 PHE CE1 CZ doub Y N 55 PHE CE1 HE1 sing N N 56 PHE CE2 CZ sing Y N 57 PHE CE2 HE2 sing N N 58 PHE CZ HZ sing N N 59 PHE OXT HXT sing N N 60 SER N CA sing N N 61 SER N H sing N N 62 SER N H2 sing N N 63 SER CA C sing N N 64 SER CA CB sing N N 65 SER CA HA sing N N 66 SER C O doub N N 67 SER C OXT sing N N 68 SER CB OG sing N N 69 SER CB HB2 sing N N 70 SER CB HB3 sing N N 71 SER OG HG sing N N 72 SER OXT HXT sing N N 73 # _pdbx_initial_refinement_model.accession_code ? _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'in silico model' _pdbx_initial_refinement_model.source_name Other _pdbx_initial_refinement_model.details 'idealized 6 residue beta strand' # _atom_sites.entry_id 2OL9 _atom_sites.fract_transf_matrix[1][1] 0.071418 _atom_sites.fract_transf_matrix[1][2] -0.014019 _atom_sites.fract_transf_matrix[1][3] -0.015272 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.208872 _atom_sites.fract_transf_matrix[2][3] -0.046757 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.069978 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 # loop_ _atom_type.symbol C N O # loop_