HEADER TRANSFERASE 19-JAN-07 2OLS TITLE THE CRYSTAL STRUCTURE OF THE PHOSPHOENOLPYRUVATE SYNTHASE FROM TITLE 2 NEISSERIA MENINGITIDIS CAVEAT 2OLS CHIRALITY ERRORS AT RESIDUES 183, 535 AND 543 COMPND MOL_ID: 1; COMPND 2 MOLECULE: PHOSPHOENOLPYRUVATE SYNTHASE; COMPND 3 CHAIN: A; COMPND 4 EC: 2.7.9.2; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: NEISSERIA MENINGITIDIS; SOURCE 3 ORGANISM_TAXID: 122586; SOURCE 4 STRAIN: MC58; SOURCE 5 GENE: PPSA, NMB0618; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PDM68 KEYWDS THE PHOSPHOENOLPYRUVATE SYNTHASE, NEISSERIA MENINGITIDIS, MCSG, KEYWDS 2 STRUCTURAL GENOMICS, PSI-2, PROTEIN STRUCTURE INITIATIVE, MIDWEST KEYWDS 3 CENTER FOR STRUCTURAL GENOMICS, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR R.ZHANG,E.DUGGAN,M.BARGASSA,A.JOACHIMIAK,MIDWEST CENTER FOR AUTHOR 2 STRUCTURAL GENOMICS (MCSG) REVDAT 4 27-DEC-23 2OLS 1 REMARK REVDAT 3 13-JUL-11 2OLS 1 VERSN REVDAT 2 24-FEB-09 2OLS 1 VERSN REVDAT 1 20-FEB-07 2OLS 0 JRNL AUTH R.ZHANG,E.DUGGAN,M.BARGASSA,A.JOACHIMIAK JRNL TITL THE CRYSTAL STRUCTURE OF THE PHOSPHOENOLPYRUVATE SYNTHASE JRNL TITL 2 FROM NEISSERIA MENINGITIDIS JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD WITH PHASES REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.22 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 88.1 REMARK 3 NUMBER OF REFLECTIONS : 40537 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.201 REMARK 3 R VALUE (WORKING SET) : 0.198 REMARK 3 FREE R VALUE : 0.251 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2165 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.40 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.46 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1876 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 56.33 REMARK 3 BIN R VALUE (WORKING SET) : 0.2680 REMARK 3 BIN FREE R VALUE SET COUNT : 94 REMARK 3 BIN FREE R VALUE : 0.3090 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5584 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 410 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 45.00 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 46.38 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.80000 REMARK 3 B22 (A**2) : -0.80000 REMARK 3 B33 (A**2) : 1.60000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.306 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.247 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.188 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 15.102 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.948 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.917 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5714 ; 0.016 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 3863 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 7721 ; 1.705 ; 1.960 REMARK 3 BOND ANGLES OTHERS (DEGREES): 9409 ; 1.182 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 723 ; 8.706 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 263 ;38.021 ;24.411 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 979 ;19.646 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 39 ;19.978 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 864 ; 0.210 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 6415 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1141 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1458 ; 0.228 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 4242 ; 0.205 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 2696 ; 0.179 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 3123 ; 0.092 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 349 ; 0.212 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): 1 ; 0.021 ; 0.200 REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 14 ; 0.194 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 47 ; 0.237 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 16 ; 0.220 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 4628 ; 1.073 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1494 ; 0.132 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 5774 ; 1.247 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2396 ; 2.021 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1947 ; 3.005 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 10 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 4 A 70 REMARK 3 RESIDUE RANGE : A 71 A 150 REMARK 3 RESIDUE RANGE : A 151 A 230 REMARK 3 RESIDUE RANGE : A 231 A 300 REMARK 3 RESIDUE RANGE : A 301 A 337 REMARK 3 RESIDUE RANGE : A 480 A 550 REMARK 3 RESIDUE RANGE : A 551 A 620 REMARK 3 RESIDUE RANGE : A 621 A 700 REMARK 3 RESIDUE RANGE : A 701 A 792 REMARK 3 RESIDUE RANGE : A 360 A 467 REMARK 3 ORIGIN FOR THE GROUP (A): 47.4230 -5.5370 20.9920 REMARK 3 T TENSOR REMARK 3 T11: -0.1920 T22: -0.2441 REMARK 3 T33: 0.2657 T12: -0.0150 REMARK 3 T13: 0.0179 T23: -0.0607 REMARK 3 L TENSOR REMARK 3 L11: 1.3819 L22: 0.1857 REMARK 3 L33: 0.2816 L12: -0.2374 REMARK 3 L13: -0.4178 L23: -0.0155 REMARK 3 S TENSOR REMARK 3 S11: -0.0534 S12: -0.0255 S13: -0.0807 REMARK 3 S21: 0.0060 S22: 0.0467 S23: -0.1350 REMARK 3 S31: 0.0287 S32: 0.0236 S33: 0.0067 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 2OLS COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 24-JAN-07. REMARK 100 THE DEPOSITION ID IS D_1000041294. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 20-MAR-06 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97980 REMARK 200 MONOCHROMATOR : SI 111 CHANNEL REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 40537 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.400 REMARK 200 RESOLUTION RANGE LOW (A) : 129.100 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 88.1 REMARK 200 DATA REDUNDANCY : 15.80 REMARK 200 R MERGE (I) : 0.11200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 21.4600 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.46 REMARK 200 COMPLETENESS FOR SHELL (%) : 56.3 REMARK 200 DATA REDUNDANCY IN SHELL : 6.90 REMARK 200 R MERGE FOR SHELL (I) : 0.70000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: HKL-3000, SOLVE, RESOLVE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 64.51 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.47 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2M POTASSIUM NITRATE, 2.2M AMMONIUM REMARK 280 SULFATE, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 36.12250 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 91.52300 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 91.52300 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 54.18375 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 91.52300 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 91.52300 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 18.06125 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 91.52300 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 91.52300 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 54.18375 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 91.52300 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 91.52300 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 18.06125 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 36.12250 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THIS PROTEIN EXISTS AS MONOMER REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA,PQS REMARK 350 TOTAL BURIED SURFACE AREA: 2900 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 59290 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -22.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 72.24500 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A1121 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ALA A 2 REMARK 465 ASP A 3 REMARK 465 GLU A 131 REMARK 465 ASP A 132 REMARK 465 LEU A 133 REMARK 465 PRO A 134 REMARK 465 ASP A 135 REMARK 465 ALA A 136 REMARK 465 SER A 137 REMARK 465 GLU A 180 REMARK 465 HIS A 181 REMARK 465 VAL A 338 REMARK 465 LYS A 339 REMARK 465 SER A 340 REMARK 465 GLN A 341 REMARK 465 GLU A 342 REMARK 465 GLU A 343 REMARK 465 GLY A 344 REMARK 465 ASN A 345 REMARK 465 ARG A 346 REMARK 465 ASN A 347 REMARK 465 LEU A 348 REMARK 465 ARG A 349 REMARK 465 ARG A 350 REMARK 465 PHE A 351 REMARK 465 ALA A 352 REMARK 465 ILE A 353 REMARK 465 ASN A 354 REMARK 465 GLY A 355 REMARK 465 ASP A 356 REMARK 465 LYS A 357 REMARK 465 THR A 358 REMARK 465 VAL A 359 REMARK 465 ILE A 366 REMARK 465 GLY A 367 REMARK 465 LEU A 377 REMARK 465 ILE A 378 REMARK 465 LYS A 379 REMARK 465 ASP A 380 REMARK 465 ALA A 381 REMARK 465 SER A 382 REMARK 465 GLU A 383 REMARK 465 MET A 384 REMARK 465 ASP A 385 REMARK 465 SER A 386 REMARK 465 VAL A 387 REMARK 465 GLU A 388 REMARK 465 ALA A 389 REMARK 465 GLY A 390 REMARK 465 LEU A 430 REMARK 465 GLY A 431 REMARK 465 ILE A 432 REMARK 465 GLU A 457 REMARK 465 GLY A 458 REMARK 465 LEU A 468 REMARK 465 ASP A 469 REMARK 465 VAL A 470 REMARK 465 GLN A 471 REMARK 465 ILE A 472 REMARK 465 THR A 473 REMARK 465 ASP A 474 REMARK 465 VAL A 475 REMARK 465 ALA A 476 REMARK 465 LEU A 477 REMARK 465 ASP A 478 REMARK 465 ASN A 479 REMARK 465 ASN A 793 REMARK 465 LYS A 794 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 270 CG CD CE NZ REMARK 470 ARG A 376 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 407 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 CG2 ILE A 183 O HOH A 1142 2.06 REMARK 500 O ILE A 183 O HOH A 1011 2.10 REMARK 500 O HOH A 810 O HOH A 1099 2.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 ASN A 618 CB ASN A 618 CG 0.177 REMARK 500 GLU A 768 CG GLU A 768 CD 0.105 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 519 NE - CZ - NH1 ANGL. DEV. = 3.8 DEGREES REMARK 500 ARG A 650 NE - CZ - NH1 ANGL. DEV. = 3.6 DEGREES REMARK 500 ARG A 650 NE - CZ - NH2 ANGL. DEV. = -4.7 DEGREES REMARK 500 ARG A 669 NE - CZ - NH1 ANGL. DEV. = 3.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS A 58 106.08 -52.67 REMARK 500 ALA A 70 -73.51 -51.50 REMARK 500 ALA A 115 39.65 -85.90 REMARK 500 THR A 129 35.56 -76.87 REMARK 500 ALA A 139 -66.20 -133.41 REMARK 500 GLN A 142 -137.49 42.81 REMARK 500 GLU A 143 132.07 176.75 REMARK 500 ILE A 183 61.80 131.69 REMARK 500 ALA A 273 -71.80 -143.95 REMARK 500 GLU A 285 -77.66 -35.14 REMARK 500 LYS A 369 140.45 116.71 REMARK 500 ASP A 396 -71.32 -73.07 REMARK 500 ARG A 408 39.37 -76.89 REMARK 500 ALA A 411 159.60 179.24 REMARK 500 CYS A 421 150.12 -46.34 REMARK 500 GLN A 449 -108.34 -138.08 REMARK 500 ASP A 535 68.08 64.88 REMARK 500 ASP A 725 113.48 -163.08 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ASN A 59 GLY A 60 -39.43 REMARK 500 GLY A 140 GLN A 141 149.79 REMARK 500 ASP A 182 ILE A 183 -45.19 REMARK 500 PRO A 433 ALA A 434 -86.53 REMARK 500 GLN A 449 GLU A 450 -65.98 REMARK 500 TYR A 464 ALA A 465 35.27 REMARK 500 GLN A 534 ASP A 535 72.10 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: APC84135 RELATED DB: TARGETDB DBREF 2OLS A 1 794 UNP Q9K0I2 Q9K0I2_NEIMB 1 794 SEQRES 1 A 794 MET ALA ASP ASN TYR VAL ILE TRP PHE GLU ASN LEU ARG SEQRES 2 A 794 MET THR ASP VAL GLU ARG VAL GLY GLY LYS ASN ALA SER SEQRES 3 A 794 LEU GLY GLU MET ILE SER GLN LEU THR GLU LYS GLY VAL SEQRES 4 A 794 ARG VAL PRO GLY GLY PHE ALA THR THR ALA GLU ALA TYR SEQRES 5 A 794 ARG ALA PHE LEU ALA HIS ASN GLY LEU SER GLU ARG ILE SEQRES 6 A 794 SER ALA ALA LEU ALA LYS LEU ASP VAL GLU ASP VAL ALA SEQRES 7 A 794 GLU LEU ALA ARG VAL GLY LYS GLU ILE ARG GLN TRP ILE SEQRES 8 A 794 LEU ASP THR PRO PHE PRO GLU GLN LEU ASP ALA GLU ILE SEQRES 9 A 794 GLU ALA ALA TRP ASN LYS MET VAL ALA ASP ALA GLY GLY SEQRES 10 A 794 ALA ASP ILE SER VAL ALA VAL ARG SER SER ALA THR ALA SEQRES 11 A 794 GLU ASP LEU PRO ASP ALA SER PHE ALA GLY GLN GLN GLU SEQRES 12 A 794 THR PHE LEU ASN ILE ASN GLY LEU ASP ASN VAL LYS GLU SEQRES 13 A 794 ALA MET HIS HIS VAL PHE ALA SER LEU TYR ASN ASP ARG SEQRES 14 A 794 ALA ILE SER TYR ARG VAL HIS LYS GLY PHE GLU HIS ASP SEQRES 15 A 794 ILE VAL ALA LEU SER ALA GLY VAL GLN ARG MET VAL ARG SEQRES 16 A 794 SER ASP SER GLY ALA SER GLY VAL MET PHE THR LEU ASP SEQRES 17 A 794 THR GLU SER GLY TYR ASP GLN VAL VAL PHE VAL THR SER SEQRES 18 A 794 SER TYR GLY LEU GLY GLU ASN VAL VAL GLN GLY ALA VAL SEQRES 19 A 794 ASN PRO ASP GLU PHE TYR VAL PHE LYS PRO THR LEU LYS SEQRES 20 A 794 ALA GLY LYS PRO ALA ILE LEU ARG LYS THR MET GLY SER SEQRES 21 A 794 LYS HIS ILE LYS MET ILE PHE THR ASP LYS ALA GLU ALA SEQRES 22 A 794 GLY LYS SER VAL THR ASN VAL ASP VAL PRO GLU GLU ASP SEQRES 23 A 794 ARG ASN ARG PHE SER ILE THR ASP GLU GLU ILE THR GLU SEQRES 24 A 794 LEU ALA HIS TYR ALA LEU THR ILE GLU LYS HIS TYR GLY SEQRES 25 A 794 ARG PRO MET ASP ILE GLU TRP GLY ARG ASP GLY LEU ASP SEQRES 26 A 794 GLY LYS LEU TYR ILE LEU GLN ALA ARG PRO GLU THR VAL SEQRES 27 A 794 LYS SER GLN GLU GLU GLY ASN ARG ASN LEU ARG ARG PHE SEQRES 28 A 794 ALA ILE ASN GLY ASP LYS THR VAL LEU CYS GLU GLY ARG SEQRES 29 A 794 ALA ILE GLY GLN LYS VAL GLY GLN GLY LYS VAL ARG LEU SEQRES 30 A 794 ILE LYS ASP ALA SER GLU MET ASP SER VAL GLU ALA GLY SEQRES 31 A 794 ASP VAL LEU VAL THR ASP MET THR ASP PRO ASP TRP GLU SEQRES 32 A 794 PRO VAL MET LYS ARG ALA SER ALA ILE VAL THR ASN ARG SEQRES 33 A 794 GLY GLY ARG THR CYS HIS ALA ALA ILE ILE ALA ARG GLU SEQRES 34 A 794 LEU GLY ILE PRO ALA VAL VAL GLY CYS GLY ASN ALA THR SEQRES 35 A 794 GLU LEU LEU LYS ASN GLY GLN GLU VAL THR VAL SER CYS SEQRES 36 A 794 ALA GLU GLY ASP THR GLY PHE ILE TYR ALA GLY LEU LEU SEQRES 37 A 794 ASP VAL GLN ILE THR ASP VAL ALA LEU ASP ASN MET PRO SEQRES 38 A 794 LYS ALA PRO VAL LYS VAL MET MET ASN VAL GLY ASN PRO SEQRES 39 A 794 GLU LEU ALA PHE SER PHE ALA ASN LEU PRO SER GLU GLY SEQRES 40 A 794 ILE GLY LEU ALA ARG MET GLU PHE ILE ILE ASN ARG GLN SEQRES 41 A 794 ILE GLY ILE HIS PRO LYS ALA LEU LEU GLU PHE ASP LYS SEQRES 42 A 794 GLN ASP ASP GLU LEU LYS ALA GLU ILE THR ARG ARG ILE SEQRES 43 A 794 ALA GLY TYR ALA SER PRO VAL ASP PHE TYR VAL ASP LYS SEQRES 44 A 794 ILE ALA GLU GLY VAL ALA THR LEU ALA ALA SER VAL TYR SEQRES 45 A 794 PRO ARG LYS THR ILE VAL ARG MET SER ASP PHE LYS SER SEQRES 46 A 794 ASN GLU TYR ALA ASN LEU VAL GLY GLY ASN VAL TYR GLU SEQRES 47 A 794 PRO HIS GLU GLU ASN PRO MET LEU GLY PHE ARG GLY ALA SEQRES 48 A 794 ALA ARG TYR VAL ALA ASP ASN PHE LYS ASP CYS PHE ALA SEQRES 49 A 794 LEU GLU CYS LYS ALA LEU LYS ARG VAL ARG ASP GLU MET SEQRES 50 A 794 GLY LEU THR ASN VAL GLU ILE MET ILE PRO PHE VAL ARG SEQRES 51 A 794 THR LEU GLY GLU ALA GLU ALA VAL VAL LYS ALA LEU LYS SEQRES 52 A 794 GLU ASN GLY LEU GLU ARG GLY LYS ASN GLY LEU ARG LEU SEQRES 53 A 794 ILE MET MET CYS GLU LEU PRO SER ASN ALA VAL LEU ALA SEQRES 54 A 794 GLU GLN PHE LEU GLN TYR PHE ASP GLY PHE SER ILE GLY SEQRES 55 A 794 SER ASN ASP MET THR GLN LEU THR LEU GLY LEU ASP ARG SEQRES 56 A 794 ASP SER GLY LEU VAL SER GLU SER PHE ASP GLU ARG ASN SEQRES 57 A 794 PRO ALA VAL LYS VAL MET LEU HIS LEU ALA ILE SER ALA SEQRES 58 A 794 CYS ARG LYS GLN ASN LYS TYR VAL GLY ILE CYS GLY GLN SEQRES 59 A 794 GLY PRO SER ASP HIS PRO ASP PHE ALA LYS TRP LEU VAL SEQRES 60 A 794 GLU GLU GLY ILE GLU SER VAL SER LEU ASN PRO ASP THR SEQRES 61 A 794 VAL ILE GLU THR TRP LEU TYR LEU ALA ASN GLU LEU ASN SEQRES 62 A 794 LYS FORMUL 2 HOH *410(H2 O) HELIX 1 1 GLU A 10 LEU A 12 5 3 HELIX 2 2 ARG A 13 THR A 15 5 3 HELIX 3 3 ASP A 16 THR A 35 1 20 HELIX 4 4 GLU A 36 GLY A 38 5 3 HELIX 5 5 THR A 48 ALA A 57 1 10 HELIX 6 6 GLY A 60 LYS A 71 1 12 HELIX 7 7 ASP A 76 ASP A 93 1 18 HELIX 8 8 PRO A 97 ALA A 115 1 19 HELIX 9 9 GLY A 150 LEU A 165 1 16 HELIX 10 10 ASN A 167 GLY A 178 1 12 HELIX 11 11 GLY A 226 GLN A 231 1 6 HELIX 12 12 LYS A 243 ALA A 248 1 6 HELIX 13 13 PRO A 283 ASN A 288 1 6 HELIX 14 14 THR A 293 GLY A 312 1 20 HELIX 15 15 ASP A 399 GLU A 403 5 5 HELIX 16 16 CYS A 421 ALA A 427 1 7 HELIX 17 17 ASN A 440 LEU A 445 1 6 HELIX 18 18 ASN A 493 GLU A 495 5 3 HELIX 19 19 LEU A 496 ASN A 502 1 7 HELIX 20 20 MET A 513 GLN A 520 1 8 HELIX 21 21 HIS A 524 GLU A 530 1 7 HELIX 22 22 PHE A 531 GLN A 534 5 4 HELIX 23 23 ASP A 535 ILE A 546 1 12 HELIX 24 24 SER A 551 TYR A 572 1 22 HELIX 25 25 LYS A 584 ASN A 590 1 7 HELIX 26 26 GLY A 594 GLU A 598 5 5 HELIX 27 27 ASN A 603 GLY A 607 5 5 HELIX 28 28 GLY A 610 ALA A 616 1 7 HELIX 29 29 PHE A 619 GLU A 636 1 18 HELIX 30 30 THR A 651 ASN A 665 1 15 HELIX 31 31 GLY A 670 LEU A 674 5 5 HELIX 32 32 LEU A 682 LEU A 688 1 7 HELIX 33 33 LEU A 688 GLN A 694 1 7 HELIX 34 34 SER A 703 GLY A 712 1 10 HELIX 35 35 VAL A 720 PHE A 724 5 5 HELIX 36 36 ASN A 728 LYS A 744 1 17 HELIX 37 37 GLN A 754 HIS A 759 1 6 HELIX 38 38 HIS A 759 GLY A 770 1 12 HELIX 39 39 ASN A 777 ASP A 779 5 3 HELIX 40 40 THR A 780 LEU A 792 1 13 SHEET 1 A 5 VAL A 6 TRP A 8 0 SHEET 2 A 5 GLY A 44 THR A 47 -1 O ALA A 46 N ILE A 7 SHEET 3 A 5 LEU A 186 ARG A 192 -1 O VAL A 190 N PHE A 45 SHEET 4 A 5 VAL A 122 ALA A 128 -1 N ALA A 123 O GLN A 191 SHEET 5 A 5 THR A 144 ILE A 148 -1 O PHE A 145 N VAL A 124 SHEET 1 B 6 ILE A 253 THR A 257 0 SHEET 2 B 6 ASP A 237 PHE A 242 -1 N GLU A 238 O THR A 257 SHEET 3 B 6 VAL A 216 TYR A 223 -1 N SER A 221 O ASP A 237 SHEET 4 B 6 ALA A 200 PHE A 205 -1 N SER A 201 O SER A 222 SHEET 5 B 6 MET A 315 ARG A 321 -1 O ARG A 321 N ALA A 200 SHEET 6 B 6 LEU A 328 PRO A 335 -1 O ARG A 334 N ASP A 316 SHEET 1 C 2 ILE A 263 PHE A 267 0 SHEET 2 C 2 VAL A 277 ASP A 281 -1 O THR A 278 N ILE A 266 SHEET 1 D 4 VAL A 375 ARG A 376 0 SHEET 2 D 4 VAL A 392 THR A 395 1 O VAL A 392 N ARG A 376 SHEET 3 D 4 ALA A 411 THR A 414 1 O ALA A 411 N LEU A 393 SHEET 4 D 4 ALA A 434 VAL A 436 1 O VAL A 435 N ILE A 412 SHEET 1 E 2 VAL A 451 THR A 452 0 SHEET 2 E 2 TYR A 464 ALA A 465 -1 O TYR A 464 N THR A 452 SHEET 1 F 9 LYS A 486 VAL A 491 0 SHEET 2 F 9 GLY A 507 ALA A 511 1 O GLY A 507 N MET A 489 SHEET 3 F 9 LYS A 575 ARG A 579 1 O ILE A 577 N ALA A 511 SHEET 4 F 9 VAL A 642 ILE A 646 1 O GLU A 643 N VAL A 578 SHEET 5 F 9 LEU A 676 CYS A 680 1 O MET A 679 N ILE A 646 SHEET 6 F 9 GLY A 698 GLY A 702 1 O SER A 700 N MET A 678 SHEET 7 F 9 TYR A 748 CYS A 752 1 O GLY A 750 N ILE A 701 SHEET 8 F 9 SER A 773 LEU A 776 1 O SER A 775 N ILE A 751 SHEET 9 F 9 LYS A 486 VAL A 491 1 N MET A 488 O VAL A 774 CISPEP 1 GLY A 117 ALA A 118 0 -0.23 CISPEP 2 ALA A 139 GLY A 140 0 10.57 CISPEP 3 TYR A 572 PRO A 573 0 16.12 CRYST1 183.046 183.046 72.245 90.00 90.00 90.00 P 43 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.005463 0.000000 0.000000 0.00000 SCALE2 0.000000 0.005463 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013842 0.00000