HEADER IMMUNE SYSTEM 21-JAN-07 2OMB TITLE BENCE JONES KWR PROTEIN- IMMUNOGLOBULIN LIGHT CHAIN DIMER, P3(1)21 TITLE 2 CRYSTAL FORM COMPND MOL_ID: 1; COMPND 2 MOLECULE: BENCE JONES KWR PROTEIN - IMMUNOGLOBULIN LIGHT CHAIN; COMPND 3 CHAIN: A, B, C, D SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 STRAIN: KWR; SOURCE 6 OTHER_DETAILS: URINE KEYWDS IMMUNOGLOBULIN LIGHT CHAIN, IMMUNE SYSTEM EXPDTA X-RAY DIFFRACTION AUTHOR D.L.MAKINO,S.B.LARSON,A.MCPHERSON REVDAT 4 30-AUG-23 2OMB 1 REMARK REVDAT 3 25-DEC-19 2OMB 1 SEQRES LINK REVDAT 2 24-FEB-09 2OMB 1 VERSN REVDAT 1 17-JUL-07 2OMB 0 JRNL AUTH D.L.MAKINO,A.H.HENSCHEN-EDMAN,S.B.LARSON,A.MCPHERSON JRNL TITL BENCE JONES KWR PROTEIN STRUCTURES DETERMINED BY X-RAY JRNL TITL 2 CRYSTALLOGRAPHY. JRNL REF ACTA CRYSTALLOGR.,SECT.D V. 63 780 2007 JRNL REFN ISSN 0907-4449 JRNL PMID 17582169 JRNL DOI 10.1107/S0907444907021981 REMARK 2 REMARK 2 RESOLUTION. 2.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 40.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 91.5 REMARK 3 NUMBER OF REFLECTIONS : 26170 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.235 REMARK 3 FREE R VALUE : 0.284 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 7.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1820 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.007 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.90 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 3.00 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 81.10 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 2137 REMARK 3 BIN R VALUE (WORKING SET) : 0.3450 REMARK 3 BIN FREE R VALUE : 0.3760 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 7.20 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 167 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.029 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6384 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 59 REMARK 3 SOLVENT ATOMS : 16 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 57.90 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 68.30 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.85000 REMARK 3 B22 (A**2) : 0.85000 REMARK 3 B33 (A**2) : -1.70000 REMARK 3 B12 (A**2) : -9.83000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.38 REMARK 3 ESD FROM SIGMAA (A) : 0.58 REMARK 3 LOW RESOLUTION CUTOFF (A) : 4.50 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.46 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.62 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.008 REMARK 3 BOND ANGLES (DEGREES) : 1.450 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 26.10 REMARK 3 IMPROPER ANGLES (DEGREES) : 0.990 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : ISOTROPIC REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 1.410 ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : 2.520 ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : 1.520 ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : 2.440 ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : CNS BULK SOLVENT MODEL USED REMARK 3 KSOL : 0.35 REMARK 3 BSOL : 49.04 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : ION.PARAM REMARK 3 PARAMETER FILE 3 : WATER.PARAM REMARK 3 PARAMETER FILE 4 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : ION.TOP REMARK 3 TOPOLOGY FILE 3 : WATER.TOP REMARK 3 TOPOLOGY FILE 4 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: PARAMETERS FOR PYROGLUTAMIC ACID AND REMARK 3 PHENOL WERE OBTAINED FROM HETERO-COMPOUND INFORMATION CENTRE - REMARK 3 UPPSALA. REMARK 4 REMARK 4 2OMB COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 26-JAN-07. REMARK 100 THE DEPOSITION ID IS D_1000041313. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 14-JAN-01 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL7-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.080 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MAR SCANNER 345 MM PLATE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 27674 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.900 REMARK 200 RESOLUTION RANGE LOW (A) : 100.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.6 REMARK 200 DATA REDUNDANCY : 4.600 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.10000 REMARK 200 FOR THE DATA SET : 14.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.02 REMARK 200 COMPLETENESS FOR SHELL (%) : 90.1 REMARK 200 DATA REDUNDANCY IN SHELL : 3.90 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.46900 REMARK 200 FOR SHELL : 2.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: CNS REMARK 200 STARTING MODEL: PDB ENTRY 1DCL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 65.03 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.52 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.5 M AMMONIUM SULFATE, 0.1M TRIS/HCL REMARK 280 PH8.0, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+2/3 REMARK 290 6555 -X,-X+Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 31.31667 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 62.63333 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 62.63333 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 31.31667 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4390 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19800 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -72.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4550 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19350 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -69.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 CYS A 22 CA - CB - SG ANGL. DEV. = 7.2 DEGREES REMARK 500 CYS C 22 CA - CB - SG ANGL. DEV. = 7.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 3 147.83 -28.66 REMARK 500 ASP A 28 -66.53 -140.57 REMARK 500 LEU A 34 58.49 -115.36 REMARK 500 PRO A 42 132.44 -33.99 REMARK 500 VAL A 53 -47.34 78.50 REMARK 500 SER A 58 157.52 -49.83 REMARK 500 SER A 97 -89.05 -46.89 REMARK 500 PRO A 146 171.26 -59.96 REMARK 500 ASP A 156 73.62 70.34 REMARK 500 SER A 157 23.48 49.56 REMARK 500 LYS A 161 -70.77 -56.59 REMARK 500 ASN A 174 3.15 -64.09 REMARK 500 ALA A 179 163.17 171.61 REMARK 500 THR A 214 109.23 33.37 REMARK 500 GLU A 215 159.13 178.64 REMARK 500 SER B 2 89.55 -53.98 REMARK 500 SER B 9 140.15 -177.89 REMARK 500 GLN B 16 -164.05 -68.46 REMARK 500 ASP B 28 -103.13 -116.52 REMARK 500 ASP B 33 67.87 -106.77 REMARK 500 PRO B 42 130.70 -36.59 REMARK 500 VAL B 53 -40.26 68.00 REMARK 500 SER B 58 58.46 -64.08 REMARK 500 SER B 67 178.54 173.70 REMARK 500 LEU B 80 131.56 -33.10 REMARK 500 GLN B 81 -162.79 -112.91 REMARK 500 ALA B 86 -158.49 -155.58 REMARK 500 LEU B 111 -89.98 -51.65 REMARK 500 PRO B 114 31.32 -85.92 REMARK 500 LYS B 115 123.63 -0.51 REMARK 500 SER B 119 107.05 -49.94 REMARK 500 ASN B 133 71.86 65.43 REMARK 500 ASP B 156 56.48 78.21 REMARK 500 SER B 157 -13.73 65.60 REMARK 500 PRO B 169 149.58 -38.26 REMARK 500 ASN B 175 -47.10 78.79 REMARK 500 PRO B 187 -88.39 -53.53 REMARK 500 SER B 192 -70.52 -62.64 REMARK 500 ARG B 194 -29.45 -38.70 REMARK 500 SER B 195 126.85 -170.67 REMARK 500 GLU B 203 82.31 47.22 REMARK 500 THR B 214 -173.28 -173.94 REMARK 500 GLU B 215 57.39 -161.72 REMARK 500 ALA C 3 175.75 -44.43 REMARK 500 VAL C 10 138.95 -171.49 REMARK 500 THR C 25 -165.35 -105.37 REMARK 500 ASP C 28 -107.22 -123.21 REMARK 500 VAL C 53 -53.14 66.29 REMARK 500 PRO C 57 152.53 -47.23 REMARK 500 SER C 69 129.23 -172.77 REMARK 500 REMARK 500 THIS ENTRY HAS 99 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 1001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 1002 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 1003 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 D 1004 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 D 1005 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 C 1006 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 1007 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 1008 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 C 1009 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IPH A 2001 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IPH D 2002 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2OLD RELATED DB: PDB REMARK 900 BENCE JONES KWR PROTEIN - IMMUNOGLOBULIN LIGHT CHAIN DIMER, P3(2)21 REMARK 900 CRYSTAL FORM REMARK 900 RELATED ID: 2OMN RELATED DB: PDB REMARK 900 BENCE JONES KWR PROTEIN - IMMUNOGLOBULIN LIGHT CHAIN DIMER, P4(3) REMARK 900 2(1)2 CRYSTAL FORM REMARK 999 REMARK 999 SEQUENCE REMARK 999 NO SUITABLE SEQUENCE DATABASE REFERENCE WAS AVAILABLE REMARK 999 AT THE TIME OF PROCESSING THIS ENTRY DBREF 2OMB A 1 217 PDB 2OMB 2OMB 1 217 DBREF 2OMB B 1 217 PDB 2OMB 2OMB 1 217 DBREF 2OMB C 1 217 PDB 2OMB 2OMB 1 217 DBREF 2OMB D 1 217 PDB 2OMB 2OMB 1 217 SEQRES 1 A 217 PCA SER ALA LEU PRO GLN PRO ALA SER VAL SER GLY SER SEQRES 2 A 217 PRO GLY GLN SER ILE THR ILE SER CYS THR GLY THR SER SEQRES 3 A 217 SER ASP VAL GLY GLY TYR ASP LEU VAL SER TRP TYR GLN SEQRES 4 A 217 HIS HIS PRO GLY GLY ALA PRO LYS LEU ILE ILE TYR GLU SEQRES 5 A 217 VAL THR ASN ARG PRO SER GLY VAL SER ASP ARG PHE SER SEQRES 6 A 217 GLY SER LYS SER GLY ASN THR ALA SER LEU THR ILE SER SEQRES 7 A 217 GLY LEU GLN ALA GLU ASP GLU ALA ASP TYR TYR CYS SER SEQRES 8 A 217 SER TYR ALA SER GLY SER THR PRO ARG ILE PHE GLY GLY SEQRES 9 A 217 GLY THR ARG LEU THR VAL LEU GLY GLN PRO LYS ALA ALA SEQRES 10 A 217 PRO SER VAL THR LEU PHE PRO PRO SER SER GLU GLU LEU SEQRES 11 A 217 GLN ALA ASN LYS ALA THR LEU VAL CYS LEU ILE SER ASP SEQRES 12 A 217 PHE TYR PRO GLY ALA VAL THR VAL ALA TRP LYS ALA ASP SEQRES 13 A 217 SER SER PRO VAL LYS ALA GLY VAL GLU THR THR THR PRO SEQRES 14 A 217 SER LYS GLN SER ASN ASN LYS TYR ALA ALA SER SER TYR SEQRES 15 A 217 LEU SER LEU THR PRO GLU GLN TRP LYS SER HIS ARG SER SEQRES 16 A 217 TYR SER CYS GLN VAL THR HIS GLU GLY SER THR VAL GLU SEQRES 17 A 217 LYS THR VAL ALA PRO THR GLU CYS SER SEQRES 1 B 217 PCA SER ALA LEU PRO GLN PRO ALA SER VAL SER GLY SER SEQRES 2 B 217 PRO GLY GLN SER ILE THR ILE SER CYS THR GLY THR SER SEQRES 3 B 217 SER ASP VAL GLY GLY TYR ASP LEU VAL SER TRP TYR GLN SEQRES 4 B 217 HIS HIS PRO GLY GLY ALA PRO LYS LEU ILE ILE TYR GLU SEQRES 5 B 217 VAL THR ASN ARG PRO SER GLY VAL SER ASP ARG PHE SER SEQRES 6 B 217 GLY SER LYS SER GLY ASN THR ALA SER LEU THR ILE SER SEQRES 7 B 217 GLY LEU GLN ALA GLU ASP GLU ALA ASP TYR TYR CYS SER SEQRES 8 B 217 SER TYR ALA SER GLY SER THR PRO ARG ILE PHE GLY GLY SEQRES 9 B 217 GLY THR ARG LEU THR VAL LEU GLY GLN PRO LYS ALA ALA SEQRES 10 B 217 PRO SER VAL THR LEU PHE PRO PRO SER SER GLU GLU LEU SEQRES 11 B 217 GLN ALA ASN LYS ALA THR LEU VAL CYS LEU ILE SER ASP SEQRES 12 B 217 PHE TYR PRO GLY ALA VAL THR VAL ALA TRP LYS ALA ASP SEQRES 13 B 217 SER SER PRO VAL LYS ALA GLY VAL GLU THR THR THR PRO SEQRES 14 B 217 SER LYS GLN SER ASN ASN LYS TYR ALA ALA SER SER TYR SEQRES 15 B 217 LEU SER LEU THR PRO GLU GLN TRP LYS SER HIS ARG SER SEQRES 16 B 217 TYR SER CYS GLN VAL THR HIS GLU GLY SER THR VAL GLU SEQRES 17 B 217 LYS THR VAL ALA PRO THR GLU CYS SER SEQRES 1 C 217 PCA SER ALA LEU PRO GLN PRO ALA SER VAL SER GLY SER SEQRES 2 C 217 PRO GLY GLN SER ILE THR ILE SER CYS THR GLY THR SER SEQRES 3 C 217 SER ASP VAL GLY GLY TYR ASP LEU VAL SER TRP TYR GLN SEQRES 4 C 217 HIS HIS PRO GLY GLY ALA PRO LYS LEU ILE ILE TYR GLU SEQRES 5 C 217 VAL THR ASN ARG PRO SER GLY VAL SER ASP ARG PHE SER SEQRES 6 C 217 GLY SER LYS SER GLY ASN THR ALA SER LEU THR ILE SER SEQRES 7 C 217 GLY LEU GLN ALA GLU ASP GLU ALA ASP TYR TYR CYS SER SEQRES 8 C 217 SER TYR ALA SER GLY SER THR PRO ARG ILE PHE GLY GLY SEQRES 9 C 217 GLY THR ARG LEU THR VAL LEU GLY GLN PRO LYS ALA ALA SEQRES 10 C 217 PRO SER VAL THR LEU PHE PRO PRO SER SER GLU GLU LEU SEQRES 11 C 217 GLN ALA ASN LYS ALA THR LEU VAL CYS LEU ILE SER ASP SEQRES 12 C 217 PHE TYR PRO GLY ALA VAL THR VAL ALA TRP LYS ALA ASP SEQRES 13 C 217 SER SER PRO VAL LYS ALA GLY VAL GLU THR THR THR PRO SEQRES 14 C 217 SER LYS GLN SER ASN ASN LYS TYR ALA ALA SER SER TYR SEQRES 15 C 217 LEU SER LEU THR PRO GLU GLN TRP LYS SER HIS ARG SER SEQRES 16 C 217 TYR SER CYS GLN VAL THR HIS GLU GLY SER THR VAL GLU SEQRES 17 C 217 LYS THR VAL ALA PRO THR GLU CYS SER SEQRES 1 D 217 PCA SER ALA LEU PRO GLN PRO ALA SER VAL SER GLY SER SEQRES 2 D 217 PRO GLY GLN SER ILE THR ILE SER CYS THR GLY THR SER SEQRES 3 D 217 SER ASP VAL GLY GLY TYR ASP LEU VAL SER TRP TYR GLN SEQRES 4 D 217 HIS HIS PRO GLY GLY ALA PRO LYS LEU ILE ILE TYR GLU SEQRES 5 D 217 VAL THR ASN ARG PRO SER GLY VAL SER ASP ARG PHE SER SEQRES 6 D 217 GLY SER LYS SER GLY ASN THR ALA SER LEU THR ILE SER SEQRES 7 D 217 GLY LEU GLN ALA GLU ASP GLU ALA ASP TYR TYR CYS SER SEQRES 8 D 217 SER TYR ALA SER GLY SER THR PRO ARG ILE PHE GLY GLY SEQRES 9 D 217 GLY THR ARG LEU THR VAL LEU GLY GLN PRO LYS ALA ALA SEQRES 10 D 217 PRO SER VAL THR LEU PHE PRO PRO SER SER GLU GLU LEU SEQRES 11 D 217 GLN ALA ASN LYS ALA THR LEU VAL CYS LEU ILE SER ASP SEQRES 12 D 217 PHE TYR PRO GLY ALA VAL THR VAL ALA TRP LYS ALA ASP SEQRES 13 D 217 SER SER PRO VAL LYS ALA GLY VAL GLU THR THR THR PRO SEQRES 14 D 217 SER LYS GLN SER ASN ASN LYS TYR ALA ALA SER SER TYR SEQRES 15 D 217 LEU SER LEU THR PRO GLU GLN TRP LYS SER HIS ARG SER SEQRES 16 D 217 TYR SER CYS GLN VAL THR HIS GLU GLY SER THR VAL GLU SEQRES 17 D 217 LYS THR VAL ALA PRO THR GLU CYS SER MODRES 2OMB PCA A 1 GLN PYROGLUTAMIC ACID MODRES 2OMB PCA B 1 GLN PYROGLUTAMIC ACID MODRES 2OMB PCA C 1 GLN PYROGLUTAMIC ACID MODRES 2OMB PCA D 1 GLN PYROGLUTAMIC ACID HET PCA A 1 8 HET PCA B 1 8 HET PCA C 1 8 HET PCA D 1 8 HET SO4 A1001 5 HET SO4 A1007 5 HET SO4 A1008 5 HET IPH A2001 7 HET SO4 B1002 5 HET SO4 B1003 5 HET SO4 C1006 5 HET SO4 C1009 5 HET SO4 D1004 5 HET SO4 D1005 5 HET IPH D2002 7 HETNAM PCA PYROGLUTAMIC ACID HETNAM SO4 SULFATE ION HETNAM IPH PHENOL FORMUL 1 PCA 4(C5 H7 N O3) FORMUL 5 SO4 9(O4 S 2-) FORMUL 8 IPH 2(C6 H6 O) FORMUL 16 HOH *16(H2 O) HELIX 1 1 GLN A 81 GLU A 85 5 5 HELIX 2 2 SER A 126 ALA A 132 1 7 HELIX 3 3 THR A 186 HIS A 193 1 8 HELIX 4 4 ASP B 28 TYR B 32 5 5 HELIX 5 5 SER B 126 ALA B 132 1 7 HELIX 6 6 THR B 186 HIS B 193 1 8 HELIX 7 7 SER C 126 ALA C 132 1 7 HELIX 8 8 THR C 186 LYS C 191 1 6 HELIX 9 9 GLN D 81 GLU D 85 5 5 HELIX 10 10 SER D 126 ALA D 132 1 7 HELIX 11 11 THR D 186 SER D 192 1 7 SHEET 1 A 5 SER A 9 GLY A 12 0 SHEET 2 A 5 THR A 106 VAL A 110 1 O THR A 109 N VAL A 10 SHEET 3 A 5 ALA A 86 TYR A 93 -1 N ALA A 86 O LEU A 108 SHEET 4 A 5 VAL A 35 HIS A 40 -1 N HIS A 40 O ASP A 87 SHEET 5 A 5 LYS A 47 ILE A 50 -1 O LYS A 47 N GLN A 39 SHEET 1 B 4 SER A 9 GLY A 12 0 SHEET 2 B 4 THR A 106 VAL A 110 1 O THR A 109 N VAL A 10 SHEET 3 B 4 ALA A 86 TYR A 93 -1 N ALA A 86 O LEU A 108 SHEET 4 B 4 ARG A 100 PHE A 102 -1 O ILE A 101 N SER A 92 SHEET 1 C 3 ILE A 18 THR A 23 0 SHEET 2 C 3 THR A 72 ILE A 77 -1 O ALA A 73 N CYS A 22 SHEET 3 C 3 PHE A 64 SER A 69 -1 N SER A 65 O THR A 76 SHEET 1 D 4 SER A 119 PHE A 123 0 SHEET 2 D 4 ALA A 135 PHE A 144 -1 O SER A 142 N SER A 119 SHEET 3 D 4 TYR A 177 LEU A 185 -1 O TYR A 177 N PHE A 144 SHEET 4 D 4 VAL A 164 THR A 166 -1 N GLU A 165 O TYR A 182 SHEET 1 E 4 SER A 119 PHE A 123 0 SHEET 2 E 4 ALA A 135 PHE A 144 -1 O SER A 142 N SER A 119 SHEET 3 E 4 TYR A 177 LEU A 185 -1 O TYR A 177 N PHE A 144 SHEET 4 E 4 SER A 170 LYS A 171 -1 N SER A 170 O ALA A 178 SHEET 1 F 3 THR A 150 LYS A 154 0 SHEET 2 F 3 TYR A 196 HIS A 202 -1 O THR A 201 N THR A 150 SHEET 3 F 3 SER A 205 VAL A 211 -1 O VAL A 207 N VAL A 200 SHEET 1 G 5 SER B 9 GLY B 12 0 SHEET 2 G 5 THR B 106 VAL B 110 1 O THR B 109 N VAL B 10 SHEET 3 G 5 ASP B 87 SER B 92 -1 N TYR B 88 O THR B 106 SHEET 4 G 5 VAL B 35 HIS B 40 -1 N HIS B 40 O ASP B 87 SHEET 5 G 5 LYS B 47 TYR B 51 -1 O LYS B 47 N GLN B 39 SHEET 1 H 4 SER B 9 GLY B 12 0 SHEET 2 H 4 THR B 106 VAL B 110 1 O THR B 109 N VAL B 10 SHEET 3 H 4 ASP B 87 SER B 92 -1 N TYR B 88 O THR B 106 SHEET 4 H 4 ILE B 101 PHE B 102 -1 O ILE B 101 N SER B 92 SHEET 1 I 3 ILE B 18 CYS B 22 0 SHEET 2 I 3 THR B 72 ILE B 77 -1 O LEU B 75 N ILE B 20 SHEET 3 I 3 PHE B 64 SER B 69 -1 N SER B 67 O SER B 74 SHEET 1 J 4 SER B 119 PHE B 123 0 SHEET 2 J 4 ALA B 135 PHE B 144 -1 O LEU B 140 N THR B 121 SHEET 3 J 4 TYR B 177 LEU B 185 -1 O SER B 181 N CYS B 139 SHEET 4 J 4 SER B 170 LYS B 171 -1 N SER B 170 O ALA B 178 SHEET 1 K 3 THR B 150 TRP B 153 0 SHEET 2 K 3 TYR B 196 THR B 201 -1 O THR B 201 N THR B 150 SHEET 3 K 3 THR B 206 VAL B 211 -1 O LYS B 209 N CYS B 198 SHEET 1 L 5 SER C 9 GLY C 12 0 SHEET 2 L 5 THR C 106 VAL C 110 1 O THR C 109 N GLY C 12 SHEET 3 L 5 ASP C 87 TYR C 93 -1 N TYR C 88 O THR C 106 SHEET 4 L 5 SER C 36 HIS C 40 -1 N HIS C 40 O ASP C 87 SHEET 5 L 5 LYS C 47 ILE C 50 -1 O LYS C 47 N GLN C 39 SHEET 1 M 4 SER C 9 GLY C 12 0 SHEET 2 M 4 THR C 106 VAL C 110 1 O THR C 109 N GLY C 12 SHEET 3 M 4 ASP C 87 TYR C 93 -1 N TYR C 88 O THR C 106 SHEET 4 M 4 ARG C 100 PHE C 102 -1 O ILE C 101 N SER C 92 SHEET 1 N 3 ILE C 18 THR C 23 0 SHEET 2 N 3 THR C 72 ILE C 77 -1 O ALA C 73 N CYS C 22 SHEET 3 N 3 PHE C 64 SER C 69 -1 N SER C 67 O SER C 74 SHEET 1 O 4 VAL C 120 PHE C 123 0 SHEET 2 O 4 LEU C 137 PHE C 144 -1 O LEU C 140 N THR C 121 SHEET 3 O 4 TYR C 177 LEU C 183 -1 O ALA C 179 N ILE C 141 SHEET 4 O 4 VAL C 164 THR C 166 -1 N GLU C 165 O TYR C 182 SHEET 1 P 3 THR C 150 ALA C 155 0 SHEET 2 P 3 TYR C 196 HIS C 202 -1 O GLN C 199 N ALA C 152 SHEET 3 P 3 SER C 205 VAL C 211 -1 O VAL C 207 N VAL C 200 SHEET 1 Q 5 SER D 9 GLY D 12 0 SHEET 2 Q 5 THR D 106 VAL D 110 1 O THR D 109 N VAL D 10 SHEET 3 Q 5 ALA D 86 SER D 92 -1 N ALA D 86 O LEU D 108 SHEET 4 Q 5 VAL D 35 HIS D 40 -1 N HIS D 40 O ASP D 87 SHEET 5 Q 5 LYS D 47 ILE D 50 -1 O LYS D 47 N GLN D 39 SHEET 1 R 4 SER D 9 GLY D 12 0 SHEET 2 R 4 THR D 106 VAL D 110 1 O THR D 109 N VAL D 10 SHEET 3 R 4 ALA D 86 SER D 92 -1 N ALA D 86 O LEU D 108 SHEET 4 R 4 ILE D 101 PHE D 102 -1 O ILE D 101 N SER D 92 SHEET 1 S 3 ILE D 18 THR D 23 0 SHEET 2 S 3 THR D 72 ILE D 77 -1 O LEU D 75 N ILE D 20 SHEET 3 S 3 PHE D 64 SER D 69 -1 N SER D 69 O THR D 72 SHEET 1 T 4 LEU D 122 PHE D 123 0 SHEET 2 T 4 LEU D 137 PHE D 144 -1 O VAL D 138 N PHE D 123 SHEET 3 T 4 TYR D 177 LEU D 183 -1 O TYR D 177 N PHE D 144 SHEET 4 T 4 VAL D 164 THR D 167 -1 N GLU D 165 O TYR D 182 SHEET 1 U 4 PRO D 159 VAL D 160 0 SHEET 2 U 4 THR D 150 LYS D 154 -1 N TRP D 153 O VAL D 160 SHEET 3 U 4 TYR D 196 THR D 201 -1 O GLN D 199 N ALA D 152 SHEET 4 U 4 GLU D 208 VAL D 211 -1 O VAL D 211 N TYR D 196 SSBOND 1 CYS A 22 CYS A 90 1555 1555 2.03 SSBOND 2 CYS A 139 CYS A 198 1555 1555 2.03 SSBOND 3 CYS A 216 CYS B 216 1555 1555 2.03 SSBOND 4 CYS B 22 CYS B 90 1555 1555 2.03 SSBOND 5 CYS B 139 CYS B 198 1555 1555 2.02 SSBOND 6 CYS C 22 CYS C 90 1555 1555 2.03 SSBOND 7 CYS C 139 CYS C 198 1555 1555 2.03 SSBOND 8 CYS C 216 CYS D 216 1555 1555 2.03 SSBOND 9 CYS D 22 CYS D 90 1555 1555 2.03 SSBOND 10 CYS D 139 CYS D 198 1555 1555 2.03 LINK C PCA A 1 N SER A 2 1555 1555 1.33 LINK C PCA B 1 N SER B 2 1555 1555 1.33 LINK C PCA C 1 N SER C 2 1555 1555 1.33 LINK C PCA D 1 N SER D 2 1555 1555 1.33 CISPEP 1 TYR A 145 PRO A 146 0 -0.48 CISPEP 2 TYR B 145 PRO B 146 0 0.26 CISPEP 3 TYR C 145 PRO C 146 0 -0.06 CISPEP 4 TYR D 145 PRO D 146 0 -0.28 SITE 1 AC1 4 SER A 26 SER A 61 ARG A 63 ASN A 71 SITE 1 AC2 3 SER B 61 ARG B 63 GLN B 81 SITE 1 AC3 4 SER B 69 GLY B 70 ASN B 71 THR B 72 SITE 1 AC4 3 SER D 61 ARG D 63 GLN D 81 SITE 1 AC5 3 GLY D 70 ASN D 71 THR D 72 SITE 1 AC6 5 SER C 26 SER C 61 ARG C 63 ASN C 71 SITE 2 AC6 5 GLU C 83 SITE 1 AC7 2 SER A 69 GLY A 70 SITE 1 AC8 5 TYR A 93 ARG A 100 HOH A2009 ARG B 100 SITE 2 AC8 5 THR C 206 SITE 1 AC9 2 THR A 206 HOH C1012 SITE 1 BC1 3 HIS A 40 TYR A 89 PRO B 46 SITE 1 BC2 2 TYR D 38 TYR D 89 CRYST1 153.520 153.520 93.950 90.00 90.00 120.00 P 31 2 1 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006514 0.003761 0.000000 0.00000 SCALE2 0.000000 0.007521 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010644 0.00000 HETATM 1 N PCA A 1 86.803 26.199 17.551 1.00 80.20 N HETATM 2 CA PCA A 1 85.586 25.911 16.755 1.00 79.08 C HETATM 3 CB PCA A 1 85.504 24.394 16.567 1.00 78.68 C HETATM 4 CG PCA A 1 86.941 23.918 16.955 1.00 79.24 C HETATM 5 CD PCA A 1 87.698 25.228 17.298 1.00 80.66 C HETATM 6 OE PCA A 1 88.924 25.398 17.320 1.00 80.63 O HETATM 7 C PCA A 1 84.331 26.436 17.458 1.00 78.07 C HETATM 8 O PCA A 1 83.429 25.670 17.806 1.00 77.43 O