data_2OMP # _entry.id 2OMP # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.389 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 2OMP pdb_00002omp 10.2210/pdb2omp/pdb RCSB RCSB041326 ? ? WWPDB D_1000041326 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2007-01-30 2 'Structure model' 1 1 2008-05-01 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2017-10-18 5 'Structure model' 1 4 2023-12-27 6 'Structure model' 1 5 2024-04-03 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' Advisory 3 3 'Structure model' 'Version format compliance' 4 4 'Structure model' 'Refinement description' 5 5 'Structure model' 'Data collection' 6 5 'Structure model' 'Database references' 7 6 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' software 2 5 'Structure model' chem_comp_atom 3 5 'Structure model' chem_comp_bond 4 5 'Structure model' database_2 5 6 'Structure model' pdbx_initial_refinement_model # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 5 'Structure model' '_database_2.pdbx_DOI' 2 5 'Structure model' '_database_2.pdbx_database_accession' # _pdbx_database_status.entry_id 2OMP _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2007-01-22 _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Ivanova, M.I.' 1 'Sawaya, M.R.' 2 'Eisenberg, D.' 3 # _citation.id primary _citation.title 'Atomic structures of amyloid cross-beta spines reveal varied steric zippers.' _citation.journal_abbrev Nature _citation.journal_volume 447 _citation.page_first 453 _citation.page_last 457 _citation.year 2007 _citation.journal_id_ASTM NATUAS _citation.country UK _citation.journal_id_ISSN 0028-0836 _citation.journal_id_CSD 0006 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 17468747 _citation.pdbx_database_id_DOI 10.1038/nature05695 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Sawaya, M.R.' 1 ? primary 'Sambashivan, S.' 2 ? primary 'Nelson, R.' 3 ? primary 'Ivanova, M.I.' 4 ? primary 'Sievers, S.A.' 5 ? primary 'Apostol, M.I.' 6 ? primary 'Thompson, M.J.' 7 ? primary 'Balbirnie, M.' 8 ? primary 'Wiltzius, J.J.' 9 ? primary 'McFarlane, H.T.' 10 ? primary 'Madsen, A.O.' 11 ? primary 'Riekel, C.' 12 ? primary 'Eisenberg, D.' 13 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn 'LYQLEN peptide derived from human insulin chain A, residues 13-18' 778.850 2 ? ? 'residues 13-18' ? 2 water nat water 18.015 6 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code LYQLEN _entity_poly.pdbx_seq_one_letter_code_can LYQLEN _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier ? # _pdbx_entity_nonpoly.entity_id 2 _pdbx_entity_nonpoly.name water _pdbx_entity_nonpoly.comp_id HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 LEU n 1 2 TYR n 1 3 GLN n 1 4 LEU n 1 5 GLU n 1 6 ASN n # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 HOH non-polymer . WATER ? 'H2 O' 18.015 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 LEU 1 1 1 LEU LEU A . n A 1 2 TYR 2 2 2 TYR TYR A . n A 1 3 GLN 3 3 3 GLN GLN A . n A 1 4 LEU 4 4 4 LEU LEU A . n A 1 5 GLU 5 5 5 GLU GLU A . n A 1 6 ASN 6 6 6 ASN ASN A . n B 1 1 LEU 1 1 1 LEU LEU B . n B 1 2 TYR 2 2 2 TYR TYR B . n B 1 3 GLN 3 3 3 GLN GLN B . n B 1 4 LEU 4 4 4 LEU LEU B . n B 1 5 GLU 5 5 5 GLU GLU B . n B 1 6 ASN 6 6 6 ASN ASN B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 HOH 1 7 1 HOH HOH A . C 2 HOH 2 8 2 HOH HOH A . C 2 HOH 3 9 3 HOH HOH A . D 2 HOH 1 7 4 HOH HOH B . D 2 HOH 2 8 5 HOH HOH B . D 2 HOH 3 9 6 HOH HOH B . # loop_ _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id _software.pdbx_ordinal DENZO . ? package 'Zbyszek Otwinowski' zbyszek@mix.swmed.edu 'data reduction' http://www.lnls.br/infra/linhasluz/denzo-hkl.htm ? ? 1 SCALEPACK . ? package 'Zbyszek Otwinowski' zbyszek@mix.swmed.edu 'data scaling' http://www.lnls.br/infra/linhasluz/denzo-hkl.htm ? ? 2 PHASER . ? other 'R. J. Read' cimr-phaser@lists.cam.ac.uk phasing http://www-structmed.cimr.cam.ac.uk/phaser/ ? ? 3 REFMAC . ? program 'Murshudov, G.N.' ccp4@dl.ac.uk refinement http://www.ccp4.ac.uk/main.html Fortran_77 ? 4 PDB_EXTRACT 2.000 'April. 3, 2006' package PDB sw-help@rcsb.rutgers.edu 'data extraction' http://pdb.rutgers.edu/software/ C++ ? 5 # _cell.length_a 9.666 _cell.length_b 28.003 _cell.length_c 17.346 _cell.angle_alpha 90.000 _cell.angle_beta 96.240 _cell.angle_gamma 90.000 _cell.entry_id 2OMP _cell.pdbx_unique_axis ? _cell.Z_PDB 4 _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.space_group_name_H-M 'P 1 21 1' _symmetry.entry_id 2OMP _symmetry.Int_Tables_number 4 _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.space_group_name_Hall ? # _exptl.crystals_number 1 _exptl.entry_id 2OMP _exptl.method 'X-RAY DIFFRACTION' # _exptl_crystal.id 1 _exptl_crystal.density_Matthews ? _exptl_crystal.density_meas ? _exptl_crystal.density_percent_sol ? _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.pH 2.5 _exptl_crystal_grow.temp 310 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pdbx_details '20mM peptide in 100 mM NaCl and 50 mM phosphate, pH 2.5, VAPOR DIFFUSION, HANGING DROP, temperature 310K' _exptl_crystal_grow.pdbx_pH_range . # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'MAR CCD 165 mm' _diffrn_detector.pdbx_collection_date 2005-07-16 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.94660 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'ESRF BEAMLINE ID13' _diffrn_source.pdbx_wavelength 0.94660 _diffrn_source.pdbx_wavelength_list ? _diffrn_source.pdbx_synchrotron_site ESRF _diffrn_source.pdbx_synchrotron_beamline ID13 # _reflns.entry_id 2OMP _reflns.d_resolution_high 1.800 _reflns.d_resolution_low 90.000 _reflns.number_obs 752 _reflns.pdbx_Rmerge_I_obs 0.186 _reflns.pdbx_netI_over_sigmaI 4.800 _reflns.pdbx_chi_squared 1.110 _reflns.pdbx_redundancy 2.100 _reflns.percent_possible_obs 91.000 _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I 0 _reflns.number_all ? _reflns.pdbx_Rsym_value ? _reflns.B_iso_Wilson_estimate 15.2 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # loop_ _reflns_shell.d_res_high _reflns_shell.d_res_low _reflns_shell.number_measured_obs _reflns_shell.number_measured_all _reflns_shell.number_unique_obs _reflns_shell.Rmerge_I_obs _reflns_shell.meanI_over_sigI_obs _reflns_shell.pdbx_Rsym_value _reflns_shell.pdbx_chi_squared _reflns_shell.pdbx_redundancy _reflns_shell.percent_possible_obs _reflns_shell.number_unique_all _reflns_shell.percent_possible_all _reflns_shell.pdbx_ordinal _reflns_shell.pdbx_diffrn_id 1.80 1.94 ? ? ? 0.402 ? ? 1.051 1.90 ? 137 83.50 1 1 1.94 2.13 ? ? ? 0.28 ? ? 1.079 2.00 ? 142 89.30 2 1 2.13 2.44 ? ? ? 0.263 ? ? 1.070 2.00 ? 154 90.10 3 1 2.44 3.08 ? ? ? 0.183 ? ? 1.122 2.20 ? 159 97.00 4 1 3.08 90.00 ? ? ? 0.13 ? ? 1.185 2.30 ? 160 95.20 5 1 # _refine.entry_id 2OMP _refine.ls_d_res_high 1.900 _refine.ls_d_res_low 17.240 _refine.pdbx_ls_sigma_F 0.00 _refine.ls_percent_reflns_obs 91.910 _refine.ls_number_reflns_obs 682 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_R_Free_selection_details RANDOM _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS' _refine.ls_R_factor_obs 0.191 _refine.ls_R_factor_R_work 0.189 _refine.ls_R_factor_R_free 0.228 _refine.ls_percent_reflns_R_free 6.000 _refine.ls_number_reflns_R_free 41 _refine.B_iso_mean 5.283 _refine.aniso_B[1][1] -0.390 _refine.aniso_B[2][2] -0.060 _refine.aniso_B[3][3] 0.380 _refine.aniso_B[1][2] 0.000 _refine.aniso_B[1][3] -0.290 _refine.aniso_B[2][3] 0.000 _refine.correlation_coeff_Fo_to_Fc 0.947 _refine.correlation_coeff_Fo_to_Fc_free 0.810 _refine.pdbx_overall_ESU_R 0.320 _refine.pdbx_overall_ESU_R_Free 0.196 _refine.overall_SU_ML 0.118 _refine.overall_SU_B 9.051 _refine.solvent_model_details MASK _refine.pdbx_solvent_vdw_probe_radii 1.200 _refine.pdbx_solvent_ion_probe_radii 0.800 _refine.pdbx_solvent_shrinkage_radii 0.800 _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_ls_sigma_I ? _refine.ls_number_reflns_all ? _refine.ls_R_factor_all ? _refine.ls_redundancy_reflns_obs ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_starting_model 'idealized beta strands, polyalanine' _refine.pdbx_stereochem_target_val_spec_case ? _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.pdbx_isotropic_thermal_model ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_TLS_residual_ADP_flag 'LIKELY RESIDUAL' _refine.pdbx_diffrn_id 1 _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 110 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 6 _refine_hist.number_atoms_total 116 _refine_hist.d_res_high 1.900 _refine_hist.d_res_low 17.240 # loop_ _refine_ls_restr.type _refine_ls_restr.number _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 113 0.008 0.022 ? 'X-RAY DIFFRACTION' ? r_bond_other_d 103 0.012 0.020 ? 'X-RAY DIFFRACTION' ? r_angle_refined_deg 152 1.357 2.072 ? 'X-RAY DIFFRACTION' ? r_angle_other_deg 241 2.015 3.000 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 10 5.755 5.000 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 8 45.743 27.500 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 22 18.223 15.000 ? 'X-RAY DIFFRACTION' ? r_chiral_restr 17 0.041 0.200 ? 'X-RAY DIFFRACTION' ? r_gen_planes_refined 118 0.002 0.020 ? 'X-RAY DIFFRACTION' ? r_gen_planes_other 18 0.001 0.020 ? 'X-RAY DIFFRACTION' ? r_nbd_refined 11 0.190 0.200 ? 'X-RAY DIFFRACTION' ? r_nbd_other 62 0.201 0.200 ? 'X-RAY DIFFRACTION' ? r_nbtor_refined 35 0.194 0.200 ? 'X-RAY DIFFRACTION' ? r_nbtor_other 70 0.090 0.200 ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined 1 0.126 0.200 ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined 3 0.264 0.200 ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_other 19 0.186 0.200 ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined 4 0.211 0.200 ? 'X-RAY DIFFRACTION' ? r_mcbond_it 91 3.237 1.500 ? 'X-RAY DIFFRACTION' ? r_mcbond_other 28 0.045 1.500 ? 'X-RAY DIFFRACTION' ? r_mcangle_it 95 2.389 2.000 ? 'X-RAY DIFFRACTION' ? r_scbond_it 69 5.139 3.000 ? 'X-RAY DIFFRACTION' ? r_scangle_it 57 5.465 4.500 ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.d_res_high 1.900 _refine_ls_shell.d_res_low 1.949 _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.percent_reflns_obs 75.000 _refine_ls_shell.number_reflns_R_work 38 _refine_ls_shell.R_factor_all ? _refine_ls_shell.R_factor_R_work 0.311 _refine_ls_shell.R_factor_R_free 0.288 _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 4 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.number_reflns_all ? _refine_ls_shell.number_reflns_obs 42 _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 2OMP _struct.title 'LYQLEN peptide derived from human insulin chain A, residues 13-18' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2OMP _struct_keywords.pdbx_keywords 'PROTEIN FIBRIL' _struct_keywords.text 'steric zipper, antiparallel beta-sheet, PROTEIN FIBRIL' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 2 ? # _struct_ref.id 1 _struct_ref.entity_id 1 _struct_ref.db_name PDB _struct_ref.db_code 2OMP _struct_ref.pdbx_db_accession 2OMP _struct_ref.pdbx_db_isoform ? _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 2OMP A 1 ? 6 ? 2OMP 1 ? 6 ? 1 6 2 1 2OMP B 1 ? 6 ? 2OMP 1 ? 6 ? 1 6 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details octameric _pdbx_struct_assembly.oligomeric_count 8 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 1_655 x+1,y,z 1.0000000000 0.0000000000 0.0000000000 9.6660000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 3 'crystal symmetry operation' 1_556 x,y,z+1 1.0000000000 0.0000000000 0.0000000000 -1.8853953284 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 17.2432305690 4 'crystal symmetry operation' 1_656 x+1,y,z+1 1.0000000000 0.0000000000 0.0000000000 7.7806046716 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 17.2432305690 # _struct_biol.id 1 _struct_biol.details ;One sheet of the steric zipper can be generated by repeated application of the crystallographic unit cell translation along the a axis. The second sheet of the steric zipper can be generated by application of the crystallographic operator X,Y,Z+1, and repeated unit cell translations of this strand along the a axis. ; _struct_biol.pdbx_parent_biol_id ? # _struct_sheet.id A _struct_sheet.type ? _struct_sheet.number_strands 2 _struct_sheet.details ? # _struct_sheet_order.sheet_id A _struct_sheet_order.range_id_1 1 _struct_sheet_order.range_id_2 2 _struct_sheet_order.offset ? _struct_sheet_order.sense anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 TYR A 2 ? GLU A 5 ? TYR A 2 GLU A 5 A 2 TYR B 2 ? GLU B 5 ? TYR B 2 GLU B 5 # _pdbx_struct_sheet_hbond.sheet_id A _pdbx_struct_sheet_hbond.range_id_1 1 _pdbx_struct_sheet_hbond.range_id_2 2 _pdbx_struct_sheet_hbond.range_1_label_atom_id N _pdbx_struct_sheet_hbond.range_1_label_comp_id GLN _pdbx_struct_sheet_hbond.range_1_label_asym_id A _pdbx_struct_sheet_hbond.range_1_label_seq_id 3 _pdbx_struct_sheet_hbond.range_1_PDB_ins_code ? _pdbx_struct_sheet_hbond.range_1_auth_atom_id N _pdbx_struct_sheet_hbond.range_1_auth_comp_id GLN _pdbx_struct_sheet_hbond.range_1_auth_asym_id A _pdbx_struct_sheet_hbond.range_1_auth_seq_id 3 _pdbx_struct_sheet_hbond.range_2_label_atom_id O _pdbx_struct_sheet_hbond.range_2_label_comp_id LEU _pdbx_struct_sheet_hbond.range_2_label_asym_id B _pdbx_struct_sheet_hbond.range_2_label_seq_id 4 _pdbx_struct_sheet_hbond.range_2_PDB_ins_code ? _pdbx_struct_sheet_hbond.range_2_auth_atom_id O _pdbx_struct_sheet_hbond.range_2_auth_comp_id LEU _pdbx_struct_sheet_hbond.range_2_auth_asym_id B _pdbx_struct_sheet_hbond.range_2_auth_seq_id 4 # loop_ _pdbx_refine_tls.id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[3][3] _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][2] _pdbx_refine_tls.pdbx_refine_id 1 ? refined 1.1396 1.9733 -0.9879 0.0054 0.0137 -0.0249 0.0084 -0.0163 0.0251 0.3619 7.0650 3.6373 1.5235 -1.1132 -5.0590 -0.1074 0.1190 -0.0116 -0.0113 -0.0316 0.0018 -0.0229 -0.0840 -0.0397 'X-RAY DIFFRACTION' 2 ? refined 6.1002 2.2679 -0.4459 -0.0298 0.0019 0.0036 0.0061 0.0053 0.0174 0.6913 6.7672 4.4172 2.1575 -1.7460 -5.4338 0.0682 0.0825 -0.1507 -0.0160 -0.0785 0.1744 0.0174 -0.0720 -0.1234 'X-RAY DIFFRACTION' # loop_ _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.selection _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.selection_details 1 1 A 1 A 6 ALL A 1 A 6 'X-RAY DIFFRACTION' ? 2 2 B 1 B 6 ALL B 1 B 6 'X-RAY DIFFRACTION' ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ASN N N N N 1 ASN CA C N S 2 ASN C C N N 3 ASN O O N N 4 ASN CB C N N 5 ASN CG C N N 6 ASN OD1 O N N 7 ASN ND2 N N N 8 ASN OXT O N N 9 ASN H H N N 10 ASN H2 H N N 11 ASN HA H N N 12 ASN HB2 H N N 13 ASN HB3 H N N 14 ASN HD21 H N N 15 ASN HD22 H N N 16 ASN HXT H N N 17 GLN N N N N 18 GLN CA C N S 19 GLN C C N N 20 GLN O O N N 21 GLN CB C N N 22 GLN CG C N N 23 GLN CD C N N 24 GLN OE1 O N N 25 GLN NE2 N N N 26 GLN OXT O N N 27 GLN H H N N 28 GLN H2 H N N 29 GLN HA H N N 30 GLN HB2 H N N 31 GLN HB3 H N N 32 GLN HG2 H N N 33 GLN HG3 H N N 34 GLN HE21 H N N 35 GLN HE22 H N N 36 GLN HXT H N N 37 GLU N N N N 38 GLU CA C N S 39 GLU C C N N 40 GLU O O N N 41 GLU CB C N N 42 GLU CG C N N 43 GLU CD C N N 44 GLU OE1 O N N 45 GLU OE2 O N N 46 GLU OXT O N N 47 GLU H H N N 48 GLU H2 H N N 49 GLU HA H N N 50 GLU HB2 H N N 51 GLU HB3 H N N 52 GLU HG2 H N N 53 GLU HG3 H N N 54 GLU HE2 H N N 55 GLU HXT H N N 56 HOH O O N N 57 HOH H1 H N N 58 HOH H2 H N N 59 LEU N N N N 60 LEU CA C N S 61 LEU C C N N 62 LEU O O N N 63 LEU CB C N N 64 LEU CG C N N 65 LEU CD1 C N N 66 LEU CD2 C N N 67 LEU OXT O N N 68 LEU H H N N 69 LEU H2 H N N 70 LEU HA H N N 71 LEU HB2 H N N 72 LEU HB3 H N N 73 LEU HG H N N 74 LEU HD11 H N N 75 LEU HD12 H N N 76 LEU HD13 H N N 77 LEU HD21 H N N 78 LEU HD22 H N N 79 LEU HD23 H N N 80 LEU HXT H N N 81 TYR N N N N 82 TYR CA C N S 83 TYR C C N N 84 TYR O O N N 85 TYR CB C N N 86 TYR CG C Y N 87 TYR CD1 C Y N 88 TYR CD2 C Y N 89 TYR CE1 C Y N 90 TYR CE2 C Y N 91 TYR CZ C Y N 92 TYR OH O N N 93 TYR OXT O N N 94 TYR H H N N 95 TYR H2 H N N 96 TYR HA H N N 97 TYR HB2 H N N 98 TYR HB3 H N N 99 TYR HD1 H N N 100 TYR HD2 H N N 101 TYR HE1 H N N 102 TYR HE2 H N N 103 TYR HH H N N 104 TYR HXT H N N 105 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ASN N CA sing N N 1 ASN N H sing N N 2 ASN N H2 sing N N 3 ASN CA C sing N N 4 ASN CA CB sing N N 5 ASN CA HA sing N N 6 ASN C O doub N N 7 ASN C OXT sing N N 8 ASN CB CG sing N N 9 ASN CB HB2 sing N N 10 ASN CB HB3 sing N N 11 ASN CG OD1 doub N N 12 ASN CG ND2 sing N N 13 ASN ND2 HD21 sing N N 14 ASN ND2 HD22 sing N N 15 ASN OXT HXT sing N N 16 GLN N CA sing N N 17 GLN N H sing N N 18 GLN N H2 sing N N 19 GLN CA C sing N N 20 GLN CA CB sing N N 21 GLN CA HA sing N N 22 GLN C O doub N N 23 GLN C OXT sing N N 24 GLN CB CG sing N N 25 GLN CB HB2 sing N N 26 GLN CB HB3 sing N N 27 GLN CG CD sing N N 28 GLN CG HG2 sing N N 29 GLN CG HG3 sing N N 30 GLN CD OE1 doub N N 31 GLN CD NE2 sing N N 32 GLN NE2 HE21 sing N N 33 GLN NE2 HE22 sing N N 34 GLN OXT HXT sing N N 35 GLU N CA sing N N 36 GLU N H sing N N 37 GLU N H2 sing N N 38 GLU CA C sing N N 39 GLU CA CB sing N N 40 GLU CA HA sing N N 41 GLU C O doub N N 42 GLU C OXT sing N N 43 GLU CB CG sing N N 44 GLU CB HB2 sing N N 45 GLU CB HB3 sing N N 46 GLU CG CD sing N N 47 GLU CG HG2 sing N N 48 GLU CG HG3 sing N N 49 GLU CD OE1 doub N N 50 GLU CD OE2 sing N N 51 GLU OE2 HE2 sing N N 52 GLU OXT HXT sing N N 53 HOH O H1 sing N N 54 HOH O H2 sing N N 55 LEU N CA sing N N 56 LEU N H sing N N 57 LEU N H2 sing N N 58 LEU CA C sing N N 59 LEU CA CB sing N N 60 LEU CA HA sing N N 61 LEU C O doub N N 62 LEU C OXT sing N N 63 LEU CB CG sing N N 64 LEU CB HB2 sing N N 65 LEU CB HB3 sing N N 66 LEU CG CD1 sing N N 67 LEU CG CD2 sing N N 68 LEU CG HG sing N N 69 LEU CD1 HD11 sing N N 70 LEU CD1 HD12 sing N N 71 LEU CD1 HD13 sing N N 72 LEU CD2 HD21 sing N N 73 LEU CD2 HD22 sing N N 74 LEU CD2 HD23 sing N N 75 LEU OXT HXT sing N N 76 TYR N CA sing N N 77 TYR N H sing N N 78 TYR N H2 sing N N 79 TYR CA C sing N N 80 TYR CA CB sing N N 81 TYR CA HA sing N N 82 TYR C O doub N N 83 TYR C OXT sing N N 84 TYR CB CG sing N N 85 TYR CB HB2 sing N N 86 TYR CB HB3 sing N N 87 TYR CG CD1 doub Y N 88 TYR CG CD2 sing Y N 89 TYR CD1 CE1 sing Y N 90 TYR CD1 HD1 sing N N 91 TYR CD2 CE2 doub Y N 92 TYR CD2 HD2 sing N N 93 TYR CE1 CZ doub Y N 94 TYR CE1 HE1 sing N N 95 TYR CE2 CZ sing Y N 96 TYR CE2 HE2 sing N N 97 TYR CZ OH sing N N 98 TYR OH HH sing N N 99 TYR OXT HXT sing N N 100 # _pdbx_initial_refinement_model.accession_code ? _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'in silico model' _pdbx_initial_refinement_model.source_name Other _pdbx_initial_refinement_model.details 'idealized beta strands, polyalanine' # _atom_sites.entry_id 2OMP _atom_sites.fract_transf_matrix[1][1] 0.103455 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.011305 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.035710 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.057993 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 # loop_ _atom_type.symbol C N O # loop_