HEADER CELL INVASION/CELL ADHESION 23-JAN-07 2OMT TITLE CRYSTAL STRUCTURE OF INLA G194S+S/HEC1 COMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: INTERNALIN-A; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: INTERNALIN DOMAIN; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: EPITHELIAL-CADHERIN; E-CAD/CTF1; COMPND 9 CHAIN: B; COMPND 10 FRAGMENT: N-TERMINAL DOMAIN OF HUMAN E-CADHERIN; COMPND 11 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: LISTERIA MONOCYTOGENES; SOURCE 3 ORGANISM_TAXID: 169963; SOURCE 4 STRAIN: EGD-E; SOURCE 5 GENE: INLA; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PGEX; SOURCE 11 MOL_ID: 2; SOURCE 12 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 13 ORGANISM_COMMON: HUMAN; SOURCE 14 ORGANISM_TAXID: 9606; SOURCE 15 GENE: CDH1, CDHE, UVO; SOURCE 16 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21; SOURCE 17 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 18 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 19 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 20 EXPRESSION_SYSTEM_PLASMID: PGEX KEYWDS LEUCINE-RICH-REPEAT, INVASION PROTEIN, IG-LIKE DOMAIN, ADHESION KEYWDS 2 PROTEIN, CELL INVASION-CELL ADHESION COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR T.WOLLERT,D.W.HEINZ,W.D.SCHUBERT REVDAT 6 30-AUG-23 2OMT 1 REMARK REVDAT 5 20-OCT-21 2OMT 1 REMARK SEQADV LINK REVDAT 4 13-JUL-11 2OMT 1 VERSN REVDAT 3 24-FEB-09 2OMT 1 VERSN REVDAT 2 20-NOV-07 2OMT 1 JRNL REVDAT 1 28-AUG-07 2OMT 0 JRNL AUTH T.WOLLERT,D.W.HEINZ,W.D.SCHUBERT JRNL TITL THERMODYNAMICALLY REENGINEERING THE LISTERIAL INVASION JRNL TITL 2 COMPLEX INLA/E-CADHERIN. JRNL REF PROC.NATL.ACAD.SCI.USA V. 104 13960 2007 JRNL REFN ISSN 0027-8424 JRNL PMID 17715295 JRNL DOI 10.1073/PNAS.0702199104 REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 40.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.5 REMARK 3 NUMBER OF REFLECTIONS : 36029 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.199 REMARK 3 R VALUE (WORKING SET) : 0.194 REMARK 3 FREE R VALUE : 0.283 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1800 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.05 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2515 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 96.23 REMARK 3 BIN R VALUE (WORKING SET) : 0.2470 REMARK 3 BIN FREE R VALUE SET COUNT : 114 REMARK 3 BIN FREE R VALUE : 0.3660 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4310 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 2 REMARK 3 SOLVENT ATOMS : 598 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 23.27 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 18.24 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.80000 REMARK 3 B22 (A**2) : 0.77000 REMARK 3 B33 (A**2) : 0.03000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.245 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.226 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.186 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 6.878 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.937 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.871 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4610 ; 0.023 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6339 ; 2.129 ; 1.977 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 615 ; 7.785 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 190 ;43.236 ;27.263 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 814 ;17.760 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 11 ;19.230 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 792 ; 0.140 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3448 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 2442 ; 0.242 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 3125 ; 0.309 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 522 ; 0.223 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): 4 ; 0.282 ; 0.200 REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 45 ; 0.212 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 46 ; 0.274 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3074 ; 1.109 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4905 ; 1.686 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1732 ; 2.994 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1430 ; 4.165 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 2OMT COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 24-JAN-07. REMARK 100 THE DEPOSITION ID IS D_1000041330. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : EMBL/DESY, HAMBURG REMARK 200 BEAMLINE : X13 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.81 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MAR CCD 165 MM REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 36174 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 40.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.8 REMARK 200 DATA REDUNDANCY : 5.000 REMARK 200 R MERGE (I) : 0.12100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 9.4400 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.10 REMARK 200 COMPLETENESS FOR SHELL (%) : 91.5 REMARK 200 DATA REDUNDANCY IN SHELL : 3.00 REMARK 200 R MERGE FOR SHELL (I) : 0.37000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: EPMR 2.5 REMARK 200 STARTING MODEL: 1O6S REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 43.97 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.20 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 4000, CACL2, NA-ACETATE, TRIS/MES, REMARK 280 PH 6.0, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 27.62000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 55.24500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 44.23500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 55.24500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 27.62000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 44.23500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ALA A 497 CA C O CB REMARK 470 GLN B 101 CA C O CB CG CD OE1 REMARK 470 GLN B 101 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NZ LYS B 25 O HOH B 140 1.96 REMARK 500 NE2 GLN A 329 O HOH A 1020 2.04 REMARK 500 NH1 ARG B 70 O HOH B 106 2.09 REMARK 500 OD1 ASN A 165 O HOH A 865 2.13 REMARK 500 OG SER A 312 O HOH A 868 2.13 REMARK 500 O THR A 318 O HOH A 612 2.14 REMARK 500 OD1 ASP A 178 OG SER A 180 2.17 REMARK 500 OE1 GLU A 211 O HOH A 1001 2.17 REMARK 500 OE1 GLN A 285 O HOH A 638 2.18 REMARK 500 O ASN A 143 O HOH A 1048 2.18 REMARK 500 O SER A 360 O HOH A 634 2.18 REMARK 500 OG1 THR A 67 O HOH A 1077 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 844 O HOH A 1018 2565 2.18 REMARK 500 O HOH A 1073 O HOH B 182 4556 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 THR A 39 C GLN A 40 N -0.207 REMARK 500 VAL A 491 CB VAL A 491 CG2 0.126 REMARK 500 VAL B 22 CB VAL B 22 CG1 0.134 REMARK 500 GLU B 69 CG GLU B 69 CD 0.100 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 THR A 39 N - CA - C ANGL. DEV. = 17.6 DEGREES REMARK 500 THR A 39 CA - C - N ANGL. DEV. = 13.6 DEGREES REMARK 500 THR A 39 O - C - N ANGL. DEV. = -14.0 DEGREES REMARK 500 GLN A 40 N - CA - CB ANGL. DEV. = 16.5 DEGREES REMARK 500 ASP A 156 CB - CG - OD2 ANGL. DEV. = -5.8 DEGREES REMARK 500 LEU A 171 CA - CB - CG ANGL. DEV. = 14.6 DEGREES REMARK 500 PRO B -2 C - N - CA ANGL. DEV. = 10.4 DEGREES REMARK 500 PRO B 5 C - N - CA ANGL. DEV. = 9.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 108 -156.47 -109.45 REMARK 500 THR A 111 -68.78 -123.16 REMARK 500 PRO A 115 1.84 -62.02 REMARK 500 MET A 127 25.19 -145.47 REMARK 500 ASN A 129 60.36 60.61 REMARK 500 ASN A 130 -167.58 -127.54 REMARK 500 GLN A 131 50.40 -119.17 REMARK 500 ASN A 152 -161.58 -120.88 REMARK 500 PHE A 193 40.75 -150.78 REMARK 500 ASN A 196 -155.70 -133.31 REMARK 500 LEU A 207 52.87 -91.42 REMARK 500 ASN A 218 -165.91 -129.77 REMARK 500 LYS A 219 47.48 -106.66 REMARK 500 LYS A 219 34.75 -98.08 REMARK 500 ALA A 237 46.05 -145.07 REMARK 500 ASN A 240 -156.05 -123.36 REMARK 500 ASN A 240 -158.42 -123.36 REMARK 500 ASN A 262 -154.08 -128.46 REMARK 500 LYS A 265 -58.19 -134.77 REMARK 500 LEU A 303 18.15 -147.42 REMARK 500 ASN A 306 -150.25 -124.50 REMARK 500 ASN A 328 -143.53 -125.33 REMARK 500 GLU A 331 -55.08 -129.76 REMARK 500 ASN A 350 -153.06 -128.50 REMARK 500 LEU A 361 72.68 -106.64 REMARK 500 ASN A 371 67.61 63.42 REMARK 500 ASN A 372 -158.14 -140.01 REMARK 500 SER A 375 -73.98 -106.95 REMARK 500 ASP A 376 104.92 -58.75 REMARK 500 ASN A 382 30.56 -91.03 REMARK 500 LEU A 383 68.29 -112.09 REMARK 500 ASN A 394 -144.41 -114.01 REMARK 500 LEU A 413 15.97 -146.86 REMARK 500 LEU A 413 21.22 -146.86 REMARK 500 ASP A 415 38.07 70.08 REMARK 500 ASN A 428 35.11 -97.65 REMARK 500 SER A 475 111.87 -169.20 REMARK 500 LEU B 21 -60.56 -96.87 REMARK 500 ALA B 43 -87.33 -122.81 REMARK 500 ARG B 70 -63.93 -108.01 REMARK 500 ARG B 70 -67.78 -104.11 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 GLU B 54 10.27 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 601 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 327 OE1 REMARK 620 2 GLU A 327 OE2 57.5 REMARK 620 3 HOH A 996 O 127.4 97.7 REMARK 620 4 HOH A1040 O 75.0 121.6 85.0 REMARK 620 5 HOH B 122 O 139.9 92.3 77.9 143.9 REMARK 620 6 HOH B 140 O 83.7 98.6 148.8 108.4 75.0 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 602 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1O6S RELATED DB: PDB REMARK 900 STRUCTURE OF INLA/HEC1 RECOGNITION COMPLEX DBREF 2OMT A 36 497 UNP P25146 INLA_LISMO 36 497 DBREF 2OMT B 2 101 UNP P12830 CADH1_HUMAN 156 255 SEQADV 2OMT SER A 194 UNP P25146 GLY 194 ENGINEERED MUTATION SEQADV 2OMT SER A 195 UNP P25146 ASN 195 ENGINEERED MUTATION SEQADV 2OMT GLY B -3 UNP P12830 EXPRESSION TAG SEQADV 2OMT PRO B -2 UNP P12830 EXPRESSION TAG SEQADV 2OMT LEU B -1 UNP P12830 EXPRESSION TAG SEQADV 2OMT GLY B 0 UNP P12830 EXPRESSION TAG SEQADV 2OMT SER B 1 UNP P12830 EXPRESSION TAG SEQRES 1 A 462 ALA THR ILE THR GLN ASP THR PRO ILE ASN GLN ILE PHE SEQRES 2 A 462 THR ASP THR ALA LEU ALA GLU LYS MET LYS THR VAL LEU SEQRES 3 A 462 GLY LYS THR ASN VAL THR ASP THR VAL SER GLN THR ASP SEQRES 4 A 462 LEU ASP GLN VAL THR THR LEU GLN ALA ASP ARG LEU GLY SEQRES 5 A 462 ILE LYS SER ILE ASP GLY VAL GLU TYR LEU ASN ASN LEU SEQRES 6 A 462 THR GLN ILE ASN PHE SER ASN ASN GLN LEU THR ASP ILE SEQRES 7 A 462 THR PRO LEU LYS ASN LEU THR LYS LEU VAL ASP ILE LEU SEQRES 8 A 462 MET ASN ASN ASN GLN ILE ALA ASP ILE THR PRO LEU ALA SEQRES 9 A 462 ASN LEU THR ASN LEU THR GLY LEU THR LEU PHE ASN ASN SEQRES 10 A 462 GLN ILE THR ASP ILE ASP PRO LEU LYS ASN LEU THR ASN SEQRES 11 A 462 LEU ASN ARG LEU GLU LEU SER SER ASN THR ILE SER ASP SEQRES 12 A 462 ILE SER ALA LEU SER GLY LEU THR SER LEU GLN GLN LEU SEQRES 13 A 462 SER PHE SER SER ASN GLN VAL THR ASP LEU LYS PRO LEU SEQRES 14 A 462 ALA ASN LEU THR THR LEU GLU ARG LEU ASP ILE SER SER SEQRES 15 A 462 ASN LYS VAL SER ASP ILE SER VAL LEU ALA LYS LEU THR SEQRES 16 A 462 ASN LEU GLU SER LEU ILE ALA THR ASN ASN GLN ILE SER SEQRES 17 A 462 ASP ILE THR PRO LEU GLY ILE LEU THR ASN LEU ASP GLU SEQRES 18 A 462 LEU SER LEU ASN GLY ASN GLN LEU LYS ASP ILE GLY THR SEQRES 19 A 462 LEU ALA SER LEU THR ASN LEU THR ASP LEU ASP LEU ALA SEQRES 20 A 462 ASN ASN GLN ILE SER ASN LEU ALA PRO LEU SER GLY LEU SEQRES 21 A 462 THR LYS LEU THR GLU LEU LYS LEU GLY ALA ASN GLN ILE SEQRES 22 A 462 SER ASN ILE SER PRO LEU ALA GLY LEU THR ALA LEU THR SEQRES 23 A 462 ASN LEU GLU LEU ASN GLU ASN GLN LEU GLU ASP ILE SER SEQRES 24 A 462 PRO ILE SER ASN LEU LYS ASN LEU THR TYR LEU THR LEU SEQRES 25 A 462 TYR PHE ASN ASN ILE SER ASP ILE SER PRO VAL SER SER SEQRES 26 A 462 LEU THR LYS LEU GLN ARG LEU PHE PHE TYR ASN ASN LYS SEQRES 27 A 462 VAL SER ASP VAL SER SER LEU ALA ASN LEU THR ASN ILE SEQRES 28 A 462 ASN TRP LEU SER ALA GLY HIS ASN GLN ILE SER ASP LEU SEQRES 29 A 462 THR PRO LEU ALA ASN LEU THR ARG ILE THR GLN LEU GLY SEQRES 30 A 462 LEU ASN ASP GLN ALA TRP THR ASN ALA PRO VAL ASN TYR SEQRES 31 A 462 LYS ALA ASN VAL SER ILE PRO ASN THR VAL LYS ASN VAL SEQRES 32 A 462 THR GLY ALA LEU ILE ALA PRO ALA THR ILE SER ASP GLY SEQRES 33 A 462 GLY SER TYR THR GLU PRO ASP ILE THR TRP ASN LEU PRO SEQRES 34 A 462 SER TYR THR ASN GLU VAL SER TYR THR PHE SER GLN PRO SEQRES 35 A 462 VAL THR ILE GLY LYS GLY THR THR THR PHE SER GLY THR SEQRES 36 A 462 VAL THR GLN PRO LEU LYS ALA SEQRES 1 B 105 GLY PRO LEU GLY SER TRP VAL ILE PRO PRO ILE SER CYS SEQRES 2 B 105 PRO GLU ASN GLU LYS GLY PRO PHE PRO LYS ASN LEU VAL SEQRES 3 B 105 GLN ILE LYS SER ASN LYS ASP LYS GLU GLY LYS VAL PHE SEQRES 4 B 105 TYR SER ILE THR GLY GLN GLY ALA ASP THR PRO PRO VAL SEQRES 5 B 105 GLY VAL PHE ILE ILE GLU ARG GLU THR GLY TRP LEU LYS SEQRES 6 B 105 VAL THR GLU PRO LEU ASP ARG GLU ARG ILE ALA THR TYR SEQRES 7 B 105 THR LEU PHE SER HIS ALA VAL SER SER ASN GLY ASN ALA SEQRES 8 B 105 VAL GLU ASP PRO MET GLU ILE LEU ILE THR VAL THR ASP SEQRES 9 B 105 GLN HET CA A 601 1 HET CL A 602 1 HETNAM CA CALCIUM ION HETNAM CL CHLORIDE ION FORMUL 3 CA CA 2+ FORMUL 4 CL CL 1- FORMUL 5 HOH *598(H2 O) HELIX 1 1 ILE A 44 PHE A 48 1 5 HELIX 2 2 ASP A 50 GLY A 62 1 13 HELIX 3 3 SER A 71 GLN A 77 1 7 HELIX 4 4 GLY A 93 LEU A 97 5 5 HELIX 5 5 ILE A 113 LYS A 117 5 5 HELIX 6 6 ILE A 135 ALA A 139 5 5 HELIX 7 7 ILE A 157 LYS A 161 5 5 HELIX 8 8 ILE A 179 SER A 183 5 5 HELIX 9 9 LEU A 201 ALA A 205 5 5 HELIX 10 10 ILE A 223 LEU A 229 5 7 HELIX 11 11 ILE A 245 LEU A 251 5 7 HELIX 12 12 ILE A 267 LEU A 273 5 7 HELIX 13 13 LEU A 289 SER A 293 5 5 HELIX 14 14 ILE A 311 ALA A 315 5 5 HELIX 15 15 ILE A 333 LEU A 339 5 7 HELIX 16 16 ILE A 355 LEU A 361 5 7 HELIX 17 17 VAL A 377 LEU A 383 5 7 HELIX 18 18 LEU A 399 ALA A 403 5 5 HELIX 19 19 ASP A 450 GLY A 452 5 3 HELIX 20 20 LYS B 28 GLU B 31 5 4 SHEET 1 A 2 THR A 42 PRO A 43 0 SHEET 2 A 2 THR A 69 VAL A 70 -1 O VAL A 70 N THR A 42 SHEET 1 B16 THR A 80 GLN A 82 0 SHEET 2 B16 GLN A 102 ASN A 104 1 O GLN A 102 N LEU A 81 SHEET 3 B16 ASP A 124 LEU A 126 1 O LEU A 126 N ILE A 103 SHEET 4 B16 GLY A 146 THR A 148 1 O THR A 148 N ILE A 125 SHEET 5 B16 ARG A 168 GLU A 170 1 O GLU A 170 N LEU A 147 SHEET 6 B16 GLN A 190 SER A 192 1 O GLN A 190 N LEU A 169 SHEET 7 B16 ARG A 212 ASP A 214 1 O ARG A 212 N LEU A 191 SHEET 8 B16 SER A 234 ILE A 236 1 O SER A 234 N LEU A 213 SHEET 9 B16 GLU A 256 SER A 258 1 O GLU A 256 N LEU A 235 SHEET 10 B16 ASP A 278 ASP A 280 1 O ASP A 280 N LEU A 257 SHEET 11 B16 GLU A 300 LYS A 302 1 O GLU A 300 N LEU A 279 SHEET 12 B16 ASN A 322 GLU A 324 1 O ASN A 322 N LEU A 301 SHEET 13 B16 TYR A 344 THR A 346 1 O TYR A 344 N LEU A 323 SHEET 14 B16 ARG A 366 PHE A 368 1 O PHE A 368 N LEU A 345 SHEET 15 B16 TRP A 388 SER A 390 1 O SER A 390 N LEU A 367 SHEET 16 B16 GLN A 410 GLY A 412 1 O GLN A 410 N LEU A 389 SHEET 1 C 4 GLN A 416 THR A 419 0 SHEET 2 C 4 GLY A 483 PRO A 494 1 O THR A 492 N TRP A 418 SHEET 3 C 4 GLU A 469 ILE A 480 -1 N ILE A 480 O GLY A 483 SHEET 4 C 4 THR A 447 ILE A 448 -1 N THR A 447 O THR A 473 SHEET 1 D 3 SER A 430 PRO A 432 0 SHEET 2 D 3 ASP A 458 THR A 460 -1 O ILE A 459 N ILE A 431 SHEET 3 D 3 SER A 453 THR A 455 -1 N SER A 453 O THR A 460 SHEET 1 E 2 TRP B 2 VAL B 3 0 SHEET 2 E 2 LYS B 25 SER B 26 -1 O LYS B 25 N VAL B 3 SHEET 1 F 4 ILE B 7 PRO B 10 0 SHEET 2 F 4 MET B 92 THR B 99 1 O THR B 99 N CYS B 9 SHEET 3 F 4 THR B 73 VAL B 81 -1 N LEU B 76 O ILE B 94 SHEET 4 F 4 PHE B 35 GLY B 40 -1 N PHE B 35 O VAL B 81 SHEET 1 G 3 LYS B 19 GLN B 23 0 SHEET 2 G 3 TRP B 59 VAL B 62 -1 O LEU B 60 N LEU B 21 SHEET 3 G 3 PHE B 51 ILE B 53 -1 N ILE B 52 O LYS B 61 LINK OE1 GLU A 327 CA CA A 601 1555 1555 2.40 LINK OE2 GLU A 327 CA CA A 601 1555 1555 2.14 LINK CA CA A 601 O HOH A 996 1555 1555 2.23 LINK CA CA A 601 O HOH A1040 1555 1555 2.16 LINK CA CA A 601 O HOH B 122 1555 1555 2.07 LINK CA CA A 601 O HOH B 140 1555 1555 2.77 CISPEP 1 GLU A 456 PRO A 457 0 -6.72 CISPEP 2 GLY B 15 PRO B 16 0 2.01 CISPEP 3 PHE B 17 PRO B 18 0 -0.03 CISPEP 4 PRO B 46 PRO B 47 0 -3.02 SITE 1 AC1 6 GLU A 327 HOH A 996 HOH A1040 LYS B 25 SITE 2 AC1 6 HOH B 122 HOH B 140 SITE 1 AC2 4 ASN A 326 HOH A 707 LYS B 25 HOH B 199 CRYST1 55.240 88.470 110.490 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018103 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011303 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009051 0.00000