HEADER HYDROLASE 25-JAN-07 2OOD TITLE CRYSTAL STRUCTURE OF GUANINE DEAMINASE FROM BRADYRHIZOBIUM JAPONICUM COMPND MOL_ID: 1; COMPND 2 MOLECULE: BLR3880 PROTEIN; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: GUANINE DEAMINASE; COMPND 5 EC: 3.5.4.3; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BRADYRHIZOBIUM JAPONICUM; SOURCE 3 ORGANISM_TAXID: 224911; SOURCE 4 STRAIN: USDA 110; SOURCE 5 GENE: BII3846, BLR3880; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)CODON PLUS RIL; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PSGX3(BC) KEYWDS PSI-II, PSI-2, 9231A, GUANINE DEAMINASE, GUANINE, STRUCTURAL KEYWDS 2 GENOMICS, PROTEIN STRUCTURE INITIATIVE, NEW YORK SGX RESEARCH CENTER KEYWDS 3 FOR STRUCTURAL GENOMICS, NYSGXRC, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR R.AGARWAL,S.K.BURLEY,S.SWAMINATHAN,NEW YORK SGX RESEARCH CENTER FOR AUTHOR 2 STRUCTURAL GENOMICS (NYSGXRC) REVDAT 5 27-DEC-23 2OOD 1 REMARK REVDAT 4 03-FEB-21 2OOD 1 AUTHOR JRNL REMARK SEQADV REVDAT 4 2 1 LINK REVDAT 3 13-JUL-11 2OOD 1 VERSN REVDAT 2 24-FEB-09 2OOD 1 VERSN REVDAT 1 20-FEB-07 2OOD 0 JRNL AUTH R.AGARWAL,S.K.BURLEY,S.SWAMINATHAN JRNL TITL CRYSTAL STRUCTURE OF GUANINE DEAMINASE FROM BRADYRHIZOBIUM JRNL TITL 2 JAPONICUM JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.62 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.62 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 41.09 REMARK 3 DATA CUTOFF (SIGMA(F)) : 1.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 36133.870 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 86.4 REMARK 3 NUMBER OF REFLECTIONS : 34927 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.187 REMARK 3 FREE R VALUE : 0.222 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 3.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1043 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.007 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.62 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.78 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 55.60 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 3566 REMARK 3 BIN R VALUE (WORKING SET) : 0.2810 REMARK 3 BIN FREE R VALUE : 0.2870 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 3.50 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 130 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.025 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3617 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 12 REMARK 3 SOLVENT ATOMS : 310 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 19.60 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 38.10 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 12.97800 REMARK 3 B22 (A**2) : 12.97800 REMARK 3 B33 (A**2) : -25.95600 REMARK 3 B12 (A**2) : 1.28600 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.29 REMARK 3 ESD FROM SIGMAA (A) : 0.40 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.34 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.41 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.007 REMARK 3 BOND ANGLES (DEGREES) : 1.440 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 23.00 REMARK 3 IMPROPER ANGLES (DEGREES) : 0.810 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.33 REMARK 3 BSOL : 33.59 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : ION.PARAM REMARK 3 PARAMETER FILE 3 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 4 : GUN.PARAM REMARK 3 PARAMETER FILE 5 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : NULL REMARK 3 TOPOLOGY FILE 3 : NULL REMARK 3 TOPOLOGY FILE 4 : GUN.TOP REMARK 3 TOPOLOGY FILE 5 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: 1. THE RESIDUES LISTED AS MISSING IN REMARK 3 REMARK 465 ARE DUE TO LACK OR ABSENCE OF ELECTRON DENSITY. 2. REMARK 3 AUTHORS HAVE MODELED THE RESIDUAL DENSITY AS THE SUBSTRATE REMARK 3 GUANINE AT THE ACTIVE SITE. IT COULD AS WELL BE XANTHINE, THE REMARK 3 PRODUCT OF CATALYTIC REACTION. REMARK 4 REMARK 4 2OOD COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 29-JAN-07. REMARK 100 THE DEPOSITION ID IS D_1000041385. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 24-JAN-07 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X29A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97920 REMARK 200 MONOCHROMATOR : SI-III REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 36811 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.620 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 90.2 REMARK 200 DATA REDUNDANCY : 35.30 REMARK 200 R MERGE (I) : 0.13000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 5.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.62 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.71 REMARK 200 COMPLETENESS FOR SHELL (%) : 53.9 REMARK 200 DATA REDUNDANCY IN SHELL : 13.30 REMARK 200 R MERGE FOR SHELL (I) : 0.43000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SHELXD, SHARP REMARK 200 STARTING MODEL: NONE REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): NULL REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): NULL REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.4 M SODIUM CITRATE, PH 5.6, VAPOR REMARK 280 DIFFUSION, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 64 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z REMARK 290 5555 Y,-X+Y,Z+1/3 REMARK 290 6555 X-Y,X,Z+2/3 REMARK 290 7555 Y,X,-Z+1/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+2/3 REMARK 290 10555 -Y,-X,-Z+1/3 REMARK 290 11555 -X+Y,Y,-Z REMARK 290 12555 X,X-Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 40.51333 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 81.02667 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 40.51333 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 81.02667 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 40.51333 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 81.02667 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 40.51333 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 81.02667 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA,PQS REMARK 350 TOTAL BURIED SURFACE AREA: 6150 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 29320 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -97.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 193.21600 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MSE A 1 REMARK 465 SER A 2 REMARK 465 ALA A 426 REMARK 465 ASP A 427 REMARK 465 GLU A 468 REMARK 465 GLY A 469 REMARK 465 HIS A 470 REMARK 465 HIS A 471 REMARK 465 HIS A 472 REMARK 465 HIS A 473 REMARK 465 HIS A 474 REMARK 465 HIS A 475 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD1 ASP A 77 O HOH A 698 2.07 REMARK 500 O VAL A 327 O HOH A 780 2.13 REMARK 500 N GLY A 89 O HOH A 837 2.16 REMARK 500 OD1 ASP A 326 O HOH A 688 2.16 REMARK 500 O HOH A 632 O HOH A 688 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 GLY A 92 N - CA - C ANGL. DEV. = 17.9 DEGREES REMARK 500 GLY A 328 N - CA - C ANGL. DEV. = -16.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 25 51.30 -156.28 REMARK 500 PRO A 59 -64.27 -29.74 REMARK 500 GLU A 62 96.66 -68.45 REMARK 500 HIS A 79 85.83 -169.87 REMARK 500 PRO A 83 1.90 -68.82 REMARK 500 LEU A 95 -75.27 -34.68 REMARK 500 THR A 139 -160.17 -125.91 REMARK 500 PHE A 207 142.46 -170.60 REMARK 500 HIS A 273 89.99 64.19 REMARK 500 VAL A 275 -58.08 29.55 REMARK 500 CYS A 295 75.00 -114.99 REMARK 500 HIS A 317 52.56 -145.97 REMARK 500 ILE A 357 -78.40 -109.76 REMARK 500 ASP A 363 93.34 -174.35 REMARK 500 THR A 382 -106.98 -134.01 REMARK 500 PHE A 398 30.13 -84.38 REMARK 500 ALA A 429 -128.43 -149.67 REMARK 500 ASP A 449 -146.94 -155.96 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 500 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 79 NE2 REMARK 620 2 HIS A 81 NE2 125.2 REMARK 620 3 HIS A 234 NE2 80.2 97.3 REMARK 620 4 ASP A 326 OD1 80.2 99.5 159.2 REMARK 620 5 GUN A 600 N2 116.2 115.9 109.9 73.2 REMARK 620 6 HOH A 688 O 130.7 70.6 148.6 50.6 56.0 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 500 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GUN A 600 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: NYSGXRC-9231A RELATED DB: TARGETDB DBREF 2OOD A 4 467 UNP Q89NG0 Q89NG0_BRAJA 2 465 SEQADV 2OOD MSE A 1 UNP Q89NG0 CLONING ARTIFACT SEQADV 2OOD SER A 2 UNP Q89NG0 CLONING ARTIFACT SEQADV 2OOD LEU A 3 UNP Q89NG0 CLONING ARTIFACT SEQADV 2OOD MSE A 38 UNP Q89NG0 MET 36 MODIFIED RESIDUE SEQADV 2OOD MSE A 158 UNP Q89NG0 MET 156 MODIFIED RESIDUE SEQADV 2OOD MSE A 285 UNP Q89NG0 MET 283 MODIFIED RESIDUE SEQADV 2OOD MSE A 321 UNP Q89NG0 MET 319 MODIFIED RESIDUE SEQADV 2OOD MSE A 335 UNP Q89NG0 MET 333 MODIFIED RESIDUE SEQADV 2OOD MSE A 347 UNP Q89NG0 MET 345 MODIFIED RESIDUE SEQADV 2OOD MSE A 440 UNP Q89NG0 MET 438 MODIFIED RESIDUE SEQADV 2OOD MSE A 445 UNP Q89NG0 MET 443 MODIFIED RESIDUE SEQADV 2OOD MSE A 446 UNP Q89NG0 MET 444 MODIFIED RESIDUE SEQADV 2OOD MSE A 459 UNP Q89NG0 MET 457 MODIFIED RESIDUE SEQADV 2OOD GLU A 468 UNP Q89NG0 CLONING ARTIFACT SEQADV 2OOD GLY A 469 UNP Q89NG0 CLONING ARTIFACT SEQADV 2OOD HIS A 470 UNP Q89NG0 CLONING ARTIFACT SEQADV 2OOD HIS A 471 UNP Q89NG0 CLONING ARTIFACT SEQADV 2OOD HIS A 472 UNP Q89NG0 CLONING ARTIFACT SEQADV 2OOD HIS A 473 UNP Q89NG0 CLONING ARTIFACT SEQADV 2OOD HIS A 474 UNP Q89NG0 CLONING ARTIFACT SEQADV 2OOD HIS A 475 UNP Q89NG0 CLONING ARTIFACT SEQRES 1 A 475 MSE SER LEU THR THR VAL GLY ILE ARG GLY THR PHE PHE SEQRES 2 A 475 ASP PHE VAL ASP ASP PRO TRP LYS HIS ILE GLY ASN GLU SEQRES 3 A 475 GLN ALA ALA ALA ARG PHE HIS GLN ASP GLY LEU MSE VAL SEQRES 4 A 475 VAL THR ASP GLY VAL ILE LYS ALA PHE GLY PRO TYR GLU SEQRES 5 A 475 LYS ILE ALA ALA ALA HIS PRO GLY VAL GLU ILE THR HIS SEQRES 6 A 475 ILE LYS ASP ARG ILE ILE VAL PRO GLY PHE ILE ASP GLY SEQRES 7 A 475 HIS ILE HIS LEU PRO GLN THR ARG VAL LEU GLY ALA TYR SEQRES 8 A 475 GLY GLU GLN LEU LEU PRO TRP LEU GLN LYS SER ILE TYR SEQRES 9 A 475 PRO GLU GLU ILE LYS TYR LYS ASP ARG ASN TYR ALA ARG SEQRES 10 A 475 GLU GLY VAL LYS ARG PHE LEU ASP ALA LEU LEU ALA ALA SEQRES 11 A 475 GLY THR THR THR CYS GLN ALA PHE THR SER SER SER PRO SEQRES 12 A 475 VAL ALA THR GLU GLU LEU PHE GLU GLU ALA SER ARG ARG SEQRES 13 A 475 ASN MSE ARG VAL ILE ALA GLY LEU THR GLY ILE ASP ARG SEQRES 14 A 475 ASN ALA PRO ALA GLU PHE ILE ASP THR PRO GLU ASN PHE SEQRES 15 A 475 TYR ARG ASP SER LYS ARG LEU ILE ALA GLN TYR HIS ASP SEQRES 16 A 475 LYS GLY ARG ASN LEU TYR ALA ILE THR PRO ARG PHE ALA SEQRES 17 A 475 PHE GLY ALA SER PRO GLU LEU LEU LYS ALA CYS GLN ARG SEQRES 18 A 475 LEU LYS HIS GLU HIS PRO ASP CYS TRP VAL ASN THR HIS SEQRES 19 A 475 ILE SER GLU ASN PRO ALA GLU CYS SER GLY VAL LEU VAL SEQRES 20 A 475 GLU HIS PRO ASP CYS GLN ASP TYR LEU GLY VAL TYR GLU SEQRES 21 A 475 LYS PHE ASP LEU VAL GLY PRO LYS PHE SER GLY GLY HIS SEQRES 22 A 475 GLY VAL TYR LEU SER ASN ASN GLU PHE ARG ARG MSE SER SEQRES 23 A 475 LYS LYS GLY ALA ALA VAL VAL PHE CYS PRO CYS SER ASN SEQRES 24 A 475 LEU PHE LEU GLY SER GLY LEU PHE ARG LEU GLY ARG ALA SEQRES 25 A 475 THR ASP PRO GLU HIS ARG VAL LYS MSE SER PHE GLY THR SEQRES 26 A 475 ASP VAL GLY GLY GLY ASN ARG PHE SER MSE ILE SER VAL SEQRES 27 A 475 LEU ASP ASP ALA TYR LYS VAL GLY MSE CYS ASN ASN THR SEQRES 28 A 475 LEU LEU ASP GLY SER ILE ASP PRO SER ARG LYS ASP LEU SEQRES 29 A 475 ALA GLU ALA GLU ARG ASN LYS LEU SER PRO TYR ARG GLY SEQRES 30 A 475 PHE TRP SER VAL THR LEU GLY GLY ALA GLU GLY LEU TYR SEQRES 31 A 475 ILE ASP ASP LYS LEU GLY ASN PHE GLU PRO GLY LYS GLU SEQRES 32 A 475 ALA ASP PHE VAL ALA LEU ASP PRO ASN GLY GLY GLN LEU SEQRES 33 A 475 ALA GLN PRO TRP HIS GLN SER LEU ILE ALA ASP GLY ALA SEQRES 34 A 475 GLY PRO ARG THR VAL ASP GLU ALA ALA SER MSE LEU PHE SEQRES 35 A 475 ALA VAL MSE MSE VAL GLY ASP ASP ARG CYS VAL ASP GLU SEQRES 36 A 475 THR TRP VAL MSE GLY LYS ARG LEU TYR LYS LYS SER GLU SEQRES 37 A 475 GLY HIS HIS HIS HIS HIS HIS MODRES 2OOD MSE A 38 MET SELENOMETHIONINE MODRES 2OOD MSE A 158 MET SELENOMETHIONINE MODRES 2OOD MSE A 285 MET SELENOMETHIONINE MODRES 2OOD MSE A 321 MET SELENOMETHIONINE MODRES 2OOD MSE A 335 MET SELENOMETHIONINE MODRES 2OOD MSE A 347 MET SELENOMETHIONINE MODRES 2OOD MSE A 440 MET SELENOMETHIONINE MODRES 2OOD MSE A 445 MET SELENOMETHIONINE MODRES 2OOD MSE A 446 MET SELENOMETHIONINE MODRES 2OOD MSE A 459 MET SELENOMETHIONINE HET MSE A 38 8 HET MSE A 158 8 HET MSE A 285 8 HET MSE A 321 8 HET MSE A 335 8 HET MSE A 347 8 HET MSE A 440 8 HET MSE A 445 8 HET MSE A 446 8 HET MSE A 459 8 HET ZN A 500 1 HET GUN A 600 11 HETNAM MSE SELENOMETHIONINE HETNAM ZN ZINC ION HETNAM GUN GUANINE FORMUL 1 MSE 10(C5 H11 N O2 SE) FORMUL 2 ZN ZN 2+ FORMUL 3 GUN C5 H5 N5 O FORMUL 4 HOH *310(H2 O) HELIX 1 1 ASP A 18 HIS A 22 5 5 HELIX 2 2 ASN A 25 ALA A 28 5 4 HELIX 3 3 TYR A 51 HIS A 58 1 8 HELIX 4 4 PRO A 83 THR A 85 5 3 HELIX 5 5 GLN A 94 ILE A 103 1 10 HELIX 6 6 ILE A 103 ILE A 108 1 6 HELIX 7 7 LYS A 109 LYS A 111 5 3 HELIX 8 8 ASP A 112 ALA A 130 1 19 HELIX 9 9 SER A 142 ASN A 157 1 16 HELIX 10 10 THR A 178 HIS A 194 1 17 HELIX 11 11 PHE A 207 ALA A 211 5 5 HELIX 12 12 SER A 212 HIS A 226 1 15 HELIX 13 13 ASN A 238 HIS A 249 1 12 HELIX 14 14 ASP A 254 LYS A 261 1 8 HELIX 15 15 SER A 278 GLY A 289 1 12 HELIX 16 16 CYS A 295 LEU A 302 1 8 HELIX 17 17 ARG A 308 THR A 313 1 6 HELIX 18 18 SER A 334 LEU A 353 1 20 HELIX 19 19 ASP A 358 LYS A 362 5 5 HELIX 20 20 ASP A 363 ASN A 370 1 8 HELIX 21 21 SER A 373 VAL A 381 1 9 HELIX 22 22 THR A 382 LEU A 389 1 8 HELIX 23 23 ALA A 417 SER A 423 1 7 HELIX 24 24 THR A 433 GLY A 448 1 16 HELIX 25 25 ASP A 449 ARG A 451 5 3 SHEET 1 A 7 ILE A 45 PRO A 50 0 SHEET 2 A 7 ALA A 30 THR A 41 -1 N VAL A 39 O LYS A 46 SHEET 3 A 7 THR A 5 PHE A 15 -1 N VAL A 6 O VAL A 40 SHEET 4 A 7 GLU A 62 PRO A 73 1 O ILE A 71 N THR A 11 SHEET 5 A 7 PHE A 406 LEU A 409 -1 O VAL A 407 N VAL A 72 SHEET 6 A 7 VAL A 453 VAL A 458 -1 O TRP A 457 N PHE A 406 SHEET 7 A 7 LYS A 461 LYS A 465 -1 O LYS A 461 N VAL A 458 SHEET 1 B 5 PHE A 75 HIS A 81 0 SHEET 2 B 5 THR A 132 PHE A 138 1 O PHE A 138 N ILE A 80 SHEET 3 B 5 VAL A 160 ALA A 162 1 O ILE A 161 N ALA A 137 SHEET 4 B 5 ASN A 199 PRO A 205 1 O ALA A 202 N ALA A 162 SHEET 5 B 5 THR A 165 GLY A 166 1 N GLY A 166 O THR A 204 SHEET 1 C 8 PHE A 75 HIS A 81 0 SHEET 2 C 8 THR A 132 PHE A 138 1 O PHE A 138 N ILE A 80 SHEET 3 C 8 VAL A 160 ALA A 162 1 O ILE A 161 N ALA A 137 SHEET 4 C 8 ASN A 199 PRO A 205 1 O ALA A 202 N ALA A 162 SHEET 5 C 8 TRP A 230 HIS A 234 1 O TRP A 230 N ILE A 203 SHEET 6 C 8 PHE A 269 GLY A 272 1 O GLY A 272 N THR A 233 SHEET 7 C 8 ALA A 291 PHE A 294 1 O ALA A 291 N PHE A 269 SHEET 8 C 8 LYS A 320 PHE A 323 1 O LYS A 320 N VAL A 292 LINK C LEU A 37 N MSE A 38 1555 1555 1.32 LINK C MSE A 38 N VAL A 39 1555 1555 1.33 LINK C ASN A 157 N MSE A 158 1555 1555 1.33 LINK C MSE A 158 N ARG A 159 1555 1555 1.33 LINK C ARG A 284 N MSE A 285 1555 1555 1.33 LINK C MSE A 285 N SER A 286 1555 1555 1.33 LINK C LYS A 320 N MSE A 321 1555 1555 1.33 LINK C MSE A 321 N SER A 322 1555 1555 1.33 LINK C SER A 334 N MSE A 335 1555 1555 1.33 LINK C MSE A 335 N ILE A 336 1555 1555 1.33 LINK C GLY A 346 N MSE A 347 1555 1555 1.33 LINK C MSE A 347 N CYS A 348 1555 1555 1.33 LINK C SER A 439 N MSE A 440 1555 1555 1.33 LINK C MSE A 440 N LEU A 441 1555 1555 1.33 LINK C VAL A 444 N MSE A 445 1555 1555 1.33 LINK C MSE A 445 N MSE A 446 1555 1555 1.33 LINK C MSE A 446 N VAL A 447 1555 1555 1.33 LINK C VAL A 458 N MSE A 459 1555 1555 1.33 LINK C MSE A 459 N GLY A 460 1555 1555 1.33 LINK NE2 HIS A 79 ZN ZN A 500 1555 1555 2.20 LINK NE2 HIS A 81 ZN ZN A 500 1555 1555 2.13 LINK NE2 HIS A 234 ZN ZN A 500 1555 1555 2.24 LINK OD1 ASP A 326 ZN ZN A 500 1555 1555 2.50 LINK ZN ZN A 500 N2 GUN A 600 1555 1555 2.05 LINK ZN ZN A 500 O HOH A 688 1555 1555 2.55 SITE 1 AC1 6 HIS A 79 HIS A 81 HIS A 234 ASP A 326 SITE 2 AC1 6 GUN A 600 HOH A 688 SITE 1 AC2 14 HIS A 79 HIS A 81 LEU A 95 TRP A 98 SITE 2 AC2 14 LEU A 99 PHE A 207 HIS A 234 GLU A 237 SITE 3 AC2 14 HIS A 273 ASP A 326 ZN A 500 HOH A 681 SITE 4 AC2 14 HOH A 688 HOH A 730 CRYST1 193.216 193.216 121.540 90.00 90.00 120.00 P 64 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.005176 0.002988 0.000000 0.00000 SCALE2 0.000000 0.005976 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008228 0.00000