HEADER STRUCTURAL GENOMICS, UNKNOWN FUNCTION 25-JAN-07 2OOK TITLE CRYSTAL STRUCTURE OF A PROTEIN WITH UNKNOWN FUNCTION (YP_749275.1) TITLE 2 FROM SHEWANELLA FRIGIDIMARINA NCIMB 400 AT 1.80 A RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: HYPOTHETICAL PROTEIN; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SHEWANELLA FRIGIDIMARINA; SOURCE 3 ORGANISM_TAXID: 318167; SOURCE 4 STRAIN: NCIMB 400; SOURCE 5 GENE: YP_749275.1, SFRI_0576; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: HK100; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: SPEEDET KEYWDS YP_749275.1, HYPOTHETICAL PROTEIN, STRUCTURAL GENOMICS, JOINT CENTER KEYWDS 2 FOR STRUCTURAL GENOMICS, JCSG, PROTEIN STRUCTURE INITIATIVE, PSI-2, KEYWDS 3 UNKNOWN FUNCTION EXPDTA X-RAY DIFFRACTION AUTHOR JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) REVDAT 7 25-JAN-23 2OOK 1 REMARK SEQADV LINK REVDAT 6 25-OCT-17 2OOK 1 REMARK REVDAT 5 18-OCT-17 2OOK 1 REMARK REVDAT 4 13-JUL-11 2OOK 1 VERSN REVDAT 3 13-APR-11 2OOK 1 JRNL REVDAT 2 24-FEB-09 2OOK 1 VERSN REVDAT 1 06-FEB-07 2OOK 0 JRNL AUTH A.KUMAR,A.LOMIZE,K.K.JIN,D.CARLTON,M.D.MILLER,L.JAROSZEWSKI, JRNL AUTH 2 P.ABDUBEK,T.ASTAKHOVA,H.L.AXELROD,H.J.CHIU,T.CLAYTON,D.DAS, JRNL AUTH 3 M.C.DELLER,L.DUAN,J.FEUERHELM,J.C.GRANT,A.GRZECHNIK,G.W.HAN, JRNL AUTH 4 H.E.KLOCK,M.W.KNUTH,P.KOZBIAL,S.S.KRISHNA,D.MARCIANO, JRNL AUTH 5 D.MCMULLAN,A.T.MORSE,E.NIGOGHOSSIAN,L.OKACH,R.REYES, JRNL AUTH 6 C.L.RIFE,N.SEFCOVIC,H.J.TIEN,C.B.TRAME,H.VAN DEN BEDEM, JRNL AUTH 7 D.WEEKES,Q.XU,K.O.HODGSON,J.WOOLEY,M.A.ELSLIGER,A.M.DEACON, JRNL AUTH 8 A.GODZIK,S.A.LESLEY,I.A.WILSON JRNL TITL OPEN AND CLOSED CONFORMATIONS OF TWO SPOIIAA-LIKE PROTEINS JRNL TITL 2 (YP_749275.1 AND YP_001095227.1) PROVIDE INSIGHTS INTO JRNL TITL 3 MEMBRANE ASSOCIATION AND LIGAND BINDING. JRNL REF ACTA CRYSTALLOGR.,SECT.F V. 66 1245 2010 JRNL REFN ESSN 1744-3091 JRNL PMID 20944218 JRNL DOI 10.1107/S1744309109042481 REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD WITH PHASES REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 28.57 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.0 REMARK 3 NUMBER OF REFLECTIONS : 22625 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.186 REMARK 3 R VALUE (WORKING SET) : 0.183 REMARK 3 FREE R VALUE : 0.233 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1162 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.80 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.85 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1567 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 94.91 REMARK 3 BIN R VALUE (WORKING SET) : 0.2430 REMARK 3 BIN FREE R VALUE SET COUNT : 74 REMARK 3 BIN FREE R VALUE : 0.3060 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1963 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 24 REMARK 3 SOLVENT ATOMS : 224 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 24.85 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 29.17 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -2.16000 REMARK 3 B22 (A**2) : 2.58000 REMARK 3 B33 (A**2) : -0.51000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -1.20000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.146 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.141 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.106 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 6.712 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.964 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.939 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2104 ; 0.012 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 1412 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2860 ; 1.526 ; 1.953 REMARK 3 BOND ANGLES OTHERS (DEGREES): 3460 ; 0.899 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 267 ; 4.704 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 93 ;32.917 ;24.946 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 365 ;11.623 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 6 ;13.645 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 318 ; 0.086 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2323 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 431 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 381 ; 0.209 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 1410 ; 0.199 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 975 ; 0.184 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 1093 ; 0.086 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 192 ; 0.178 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 14 ; 0.249 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 40 ; 0.314 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 14 ; 0.176 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1367 ; 2.073 ; 3.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 518 ; 0.524 ; 3.000 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2020 ; 2.832 ; 5.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 972 ; 4.445 ; 8.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 828 ; 5.680 ;11.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 2 A 126 REMARK 3 ORIGIN FOR THE GROUP (A): 14.9420 20.6510 17.9260 REMARK 3 T TENSOR REMARK 3 T11: -0.1430 T22: -0.2224 REMARK 3 T33: -0.1556 T12: -0.0233 REMARK 3 T13: 0.0113 T23: 0.0150 REMARK 3 L TENSOR REMARK 3 L11: 3.3434 L22: 1.9818 REMARK 3 L33: 3.3031 L12: 1.5389 REMARK 3 L13: -0.0728 L23: 0.5879 REMARK 3 S TENSOR REMARK 3 S11: 0.0797 S12: -0.0643 S13: 0.0660 REMARK 3 S21: 0.0612 S22: -0.0276 S23: 0.0962 REMARK 3 S31: -0.0599 S32: -0.1041 S33: -0.0522 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 3 B 79 REMARK 3 RESIDUE RANGE : B 82 B 126 REMARK 3 ORIGIN FOR THE GROUP (A): 33.5380 29.3150 20.8880 REMARK 3 T TENSOR REMARK 3 T11: -0.1119 T22: -0.1938 REMARK 3 T33: -0.1572 T12: -0.0423 REMARK 3 T13: 0.0213 T23: -0.0221 REMARK 3 L TENSOR REMARK 3 L11: 4.3945 L22: 1.1550 REMARK 3 L33: 2.2870 L12: 1.4246 REMARK 3 L13: 0.7787 L23: -0.2384 REMARK 3 S TENSOR REMARK 3 S11: 0.1099 S12: -0.1311 S13: 0.1426 REMARK 3 S21: 0.1397 S22: -0.0566 S23: -0.0272 REMARK 3 S31: -0.0914 S32: 0.0210 S33: -0.0533 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REMARK 3 1. HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS. REMARK 3 2. A MET-INHIBITION PROTOCOL WAS USED FOR SELENOMETHIONINE REMARK 3 INCORPORATION DURING PROTEIN EXPRESSION. THE OCCUPANCY REMARK 3 OF THE SE ATOMS IN THE MSE RESIDUES WAS REDUCED TO 0.75 REMARK 3 FOR THE REDUCED SCATTERING POWER DUE TO PARTIAL S-MET REMARK 3 INCORPORATION. REMARK 3 3. RESIDUES 1 IN CHAIN A AND 1-2, 80-81 IN CHAIN B ARE DISORDERED REMARK 3 AND NOT INCLUDED IN THE MODEL. REMARK 3 4. EDO MOLECULES FROM THE CRYO SOLUTION ARE MODELED. REMARK 3 5. ATOM RECORDS CONTAIN RESIDUAL B FACTORS ONLY. REMARK 4 REMARK 4 2OOK COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 29-JAN-07. REMARK 100 THE DEPOSITION ID IS D_1000041392. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 07-JAN-07 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.3 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL11-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.91837, 0.97910, 0.97879 REMARK 200 MONOCHROMATOR : SINGLE CRYSTAL SI(111) BENT REMARK 200 (HORIZONTAL FOCUSING) REMARK 200 OPTICS : FLAT MIRROR (VERTICAL FOCUSING) REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 325 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA, CCP4 (SCALA) REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 22625 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 28.571 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.5 REMARK 200 DATA REDUNDANCY : 3.800 REMARK 200 R MERGE (I) : 0.05600 REMARK 200 R SYM (I) : 0.05600 REMARK 200 FOR THE DATA SET : 13.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.85 REMARK 200 COMPLETENESS FOR SHELL (%) : 95.3 REMARK 200 DATA REDUNDANCY IN SHELL : 3.80 REMARK 200 R MERGE FOR SHELL (I) : 0.65300 REMARK 200 R SYM FOR SHELL (I) : 0.65300 REMARK 200 FOR SHELL : 2.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SHELX, SHELXD, AUTOSHARP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 42.97 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.16 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NANODROP, 0.2M CALCIUM ACETATE, 20.0% REMARK 280 PEG-3350, NO BUFFER, PH 7.3, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 40.28950 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 20.20600 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 40.28950 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 20.20600 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 THIS ENTRY CONTAINS THE CRYSTALLOGRAPHIC ASYMMETRIC UNIT REMARK 300 WHICH CONSISTS OF 2 CHAINS. SEE REMARK 350 FOR REMARK 300 INFORMATION ON GENERATING THE BIOLOGICAL MOLECULE(S). REMARK 300 SIZE EXCLUSION CHROMATOGRAPHY WITH STATIC LIGHT SCATTERING REMARK 300 SUPPORTS THE ASSIGNMENT OF A DIMER AS THE SIGNIFICANT REMARK 300 OLIGOMERIZATION STATE. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4110 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 11400 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -1.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH B 239 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 0 REMARK 465 MSE A 1 REMARK 465 GLY B 0 REMARK 465 MSE B 1 REMARK 465 ASP B 2 REMARK 465 HIS B 80 REMARK 465 LYS B 81 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 52 CD CE NZ REMARK 470 ARG A 68 CD NE CZ NH1 NH2 REMARK 470 LYS A 79 CG CD CE NZ REMARK 470 LYS A 81 CD CE NZ REMARK 470 LYS A 93 CD CE NZ REMARK 470 ASP A 118 CG OD1 OD2 REMARK 470 GLU B 32 CD OE1 OE2 REMARK 470 LYS B 52 CD CE NZ REMARK 470 LYS B 79 CD CE NZ REMARK 470 GLU B 85 OE1 OE2 REMARK 470 GLU B 115 CD OE1 OE2 REMARK 470 ARG B 125 NE CZ NH1 NH2 REMARK 470 TYR B 126 CG CD1 CD2 CE1 CE2 CZ OH REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 MSE A 40 CG - SE - CE ANGL. DEV. = -16.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU B 16 -106.04 45.06 REMARK 500 TRP B 98 -14.34 -141.60 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 127 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 128 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 129 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 127 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 130 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 128 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 372476 RELATED DB: TARGETDB REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE CONSTRUCT WAS EXPRESSED WITH A PURIFICATION TAG REMARK 999 MGSDKIHHHHHHENLYFQG. THE TAG WAS REMOVED WITH TEV PROTEASE REMARK 999 LEAVING ONLY A GLYCINE (0) FOLLOWED BY THE TARGET SEQUENCE. DBREF 2OOK A 1 126 UNP Q087X8 Q087X8_SHEFN 1 126 DBREF 2OOK B 1 126 UNP Q087X8 Q087X8_SHEFN 1 126 SEQADV 2OOK GLY A 0 UNP Q087X8 EXPRESSION TAG SEQADV 2OOK MSE A 1 UNP Q087X8 MET 1 MODIFIED RESIDUE SEQADV 2OOK MSE A 3 UNP Q087X8 MET 3 MODIFIED RESIDUE SEQADV 2OOK MSE A 40 UNP Q087X8 MET 40 MODIFIED RESIDUE SEQADV 2OOK GLY B 0 UNP Q087X8 EXPRESSION TAG SEQADV 2OOK MSE B 1 UNP Q087X8 MET 1 MODIFIED RESIDUE SEQADV 2OOK MSE B 3 UNP Q087X8 MET 3 MODIFIED RESIDUE SEQADV 2OOK MSE B 40 UNP Q087X8 MET 40 MODIFIED RESIDUE SEQRES 1 A 127 GLY MSE ASP MSE LYS LYS HIS GLY LEU SER ILE GLY ILE SEQRES 2 A 127 ASN ARG ILE GLU SER VAL PHE PHE VAL THR LEU LYS ALA SEQRES 3 A 127 ILE GLY THR LEU THR HIS GLU ASP TYR LEU VAL ILE THR SEQRES 4 A 127 PRO MSE LEU GLU GLY ALA LEU SER GLN VAL ASP GLN PRO SEQRES 5 A 127 LYS VAL SER LEU PHE LEU ASP ALA THR GLU LEU ASP GLY SEQRES 6 A 127 TRP ASP LEU ARG ALA ALA TRP ASP ASP LEU LYS LEU GLY SEQRES 7 A 127 LEU LYS HIS LYS SER GLU PHE GLU ARG VAL ALA ILE LEU SEQRES 8 A 127 GLY ASN LYS ASP TRP GLN GLU TRP ALA ALA LYS ILE GLY SEQRES 9 A 127 SER TRP PHE ILE ALA GLY GLU ILE LYS TYR PHE GLU ASP SEQRES 10 A 127 GLU ASP ASP ALA LEU LYS TRP LEU ARG TYR SEQRES 1 B 127 GLY MSE ASP MSE LYS LYS HIS GLY LEU SER ILE GLY ILE SEQRES 2 B 127 ASN ARG ILE GLU SER VAL PHE PHE VAL THR LEU LYS ALA SEQRES 3 B 127 ILE GLY THR LEU THR HIS GLU ASP TYR LEU VAL ILE THR SEQRES 4 B 127 PRO MSE LEU GLU GLY ALA LEU SER GLN VAL ASP GLN PRO SEQRES 5 B 127 LYS VAL SER LEU PHE LEU ASP ALA THR GLU LEU ASP GLY SEQRES 6 B 127 TRP ASP LEU ARG ALA ALA TRP ASP ASP LEU LYS LEU GLY SEQRES 7 B 127 LEU LYS HIS LYS SER GLU PHE GLU ARG VAL ALA ILE LEU SEQRES 8 B 127 GLY ASN LYS ASP TRP GLN GLU TRP ALA ALA LYS ILE GLY SEQRES 9 B 127 SER TRP PHE ILE ALA GLY GLU ILE LYS TYR PHE GLU ASP SEQRES 10 B 127 GLU ASP ASP ALA LEU LYS TRP LEU ARG TYR MODRES 2OOK MSE A 3 MET SELENOMETHIONINE MODRES 2OOK MSE A 40 MET SELENOMETHIONINE MODRES 2OOK MSE B 3 MET SELENOMETHIONINE MODRES 2OOK MSE B 40 MET SELENOMETHIONINE HET MSE A 3 8 HET MSE A 40 8 HET MSE B 3 8 HET MSE B 40 13 HET EDO A 127 4 HET EDO A 128 4 HET EDO A 129 4 HET EDO A 130 4 HET EDO B 127 4 HET EDO B 128 4 HETNAM MSE SELENOMETHIONINE HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 1 MSE 4(C5 H11 N O2 SE) FORMUL 3 EDO 6(C2 H6 O2) FORMUL 9 HOH *224(H2 O) HELIX 1 1 THR A 30 SER A 46 1 17 HELIX 2 2 ALA A 69 LEU A 74 5 6 HELIX 3 3 LYS A 101 PHE A 106 5 6 HELIX 4 4 ASP A 116 TYR A 126 1 11 HELIX 5 5 THR B 30 SER B 46 1 17 HELIX 6 6 ALA B 69 LEU B 74 5 6 HELIX 7 7 TRP B 98 SER B 104 1 7 HELIX 8 8 ASP B 116 TYR B 126 1 11 SHEET 1 A 8 ALA A 108 PHE A 114 0 SHEET 2 A 8 PHE A 84 LEU A 90 1 N ILE A 89 O PHE A 114 SHEET 3 A 8 LEU A 55 TRP A 65 1 N LEU A 57 O ALA A 88 SHEET 4 A 8 VAL A 18 LEU A 29 1 N LEU A 23 O ASP A 58 SHEET 5 A 8 LYS A 5 ILE A 15 -1 N GLY A 7 O ILE A 26 SHEET 6 A 8 LYS B 5 ILE B 15 -1 O ILE B 10 N ILE A 10 SHEET 7 A 8 VAL B 18 LEU B 29 -1 O PHE B 20 N ASN B 13 SHEET 8 A 8 LEU B 62 TRP B 65 1 O GLY B 64 N LEU B 29 SHEET 1 B10 ALA A 108 PHE A 114 0 SHEET 2 B10 PHE A 84 LEU A 90 1 N ILE A 89 O PHE A 114 SHEET 3 B10 LEU A 55 TRP A 65 1 N LEU A 57 O ALA A 88 SHEET 4 B10 VAL A 18 LEU A 29 1 N LEU A 23 O ASP A 58 SHEET 5 B10 LYS A 5 ILE A 15 -1 N GLY A 7 O ILE A 26 SHEET 6 B10 LYS B 5 ILE B 15 -1 O ILE B 10 N ILE A 10 SHEET 7 B10 VAL B 18 LEU B 29 -1 O PHE B 20 N ASN B 13 SHEET 8 B10 LEU B 55 ASP B 58 1 O ASP B 58 N LEU B 23 SHEET 9 B10 PHE B 84 LEU B 90 1 O ALA B 88 N LEU B 57 SHEET 10 B10 ALA B 108 PHE B 114 1 O PHE B 114 N ILE B 89 LINK C ASP A 2 N MSE A 3 1555 1555 1.33 LINK C MSE A 3 N LYS A 4 1555 1555 1.33 LINK C PRO A 39 N MSE A 40 1555 1555 1.33 LINK C MSE A 40 N LEU A 41 1555 1555 1.34 LINK C MSE B 3 N LYS B 4 1555 1555 1.32 LINK C PRO B 39 N MSE B 40 1555 1555 1.32 LINK C MSE B 40 N LEU B 41 1555 1555 1.33 SITE 1 AC1 7 SER A 9 THR A 22 LYS A 24 HOH A 197 SITE 2 AC1 7 HOH A 219 SER B 9 EDO B 127 SITE 1 AC2 6 LEU A 8 SER A 9 LYS A 24 ILE A 26 SITE 2 AC2 6 HOH A 209 ASN B 13 SITE 1 AC3 5 LYS A 112 HOH A 158 HOH A 207 GLU B 97 SITE 2 AC3 5 LYS B 101 SITE 1 AC4 9 ASN A 13 EDO A 127 LYS B 5 LEU B 8 SITE 2 AC4 9 SER B 9 LYS B 24 ILE B 26 HOH B 175 SITE 3 AC4 9 HOH B 201 SITE 1 AC5 5 GLY A 109 HOH A 176 LEU B 67 ASP B 72 SITE 2 AC5 5 HOH B 216 SITE 1 AC6 6 PRO A 39 LYS A 93 GLU A 115 GLN B 47 SITE 2 AC6 6 ASP B 94 HOH B 178 CRYST1 80.579 40.412 78.050 90.00 92.23 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012410 0.000000 0.000480 0.00000 SCALE2 0.000000 0.024750 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012820 0.00000