HEADER HORMONE 26-JAN-07 2OOP TITLE STRUCTURE OF TYR7-PYY IN SOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: PEPTIDE YY; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: PYY; COMPND 5 SYNONYM: PYY, PEPTIDE TYROSINE TYROSINE; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SUS SCROFA; SOURCE 3 ORGANISM_COMMON: PIG; SOURCE 4 ORGANISM_TAXID: 9823; SOURCE 5 GENE: PYY; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: DH5A; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID KEYWDS HELICAL HARIPIN, FOLDING, HORMONE EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR O.ZERBE,A.NEUMOIN,J.MARES REVDAT 4 27-DEC-23 2OOP 1 REMARK REVDAT 3 20-OCT-21 2OOP 1 REMARK SEQADV LINK REVDAT 2 24-FEB-09 2OOP 1 VERSN REVDAT 1 25-DEC-07 2OOP 0 JRNL AUTH A.NEUMOIN,J.MARES,M.LERCH-BADER,R.BADER,O.ZERBE JRNL TITL PROBING THE FORMATION OF STABLE TERTIARY STRUCTURE IN A JRNL TITL 2 MODEL MINIPROTEIN AT ATOMIC RESOLUTION: DETERMINANTS OF JRNL TITL 3 STABILITY OF A HELICAL HAIRPIN. JRNL REF J.AM.CHEM.SOC. V. 129 8811 2007 JRNL REFN ISSN 0002-7863 JRNL PMID 17580866 JRNL DOI 10.1021/JA0716960 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : TOPSPIN 1.3, AMBER 6 REMARK 3 AUTHORS : BRUKER (TOPSPIN), KOLLMAN (AMBER) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2OOP COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 29-JAN-07. REMARK 100 THE DEPOSITION ID IS D_1000041397. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 301 REMARK 210 PH : 4.1 REMARK 210 IONIC STRENGTH : 0 REMARK 210 PRESSURE : 1 ATM REMARK 210 SAMPLE CONTENTS : 1MM Y7-PYY IN 20MM ACETATE REMARK 210 BUFFER, PH 4.1 REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D NOESY; 2D TOCSY; DQF-COSY REMARK 210 SPECTROMETER FIELD STRENGTH : 700 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : DYANA 1.5 REMARK 210 METHOD USED : MD USING NOE- AND 3J-DERIVED REMARK 210 UPPER DISTANCE CONSTRAINTS, REMARK 210 ENERGY MINIMIZATION USING AMBER REMARK 210 WITH EXPLICT WATER REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 16 ARG A 19 NE - CZ - NH1 ANGL. DEV. = 3.9 DEGREES REMARK 500 18 ARG A 19 NE - CZ - NH1 ANGL. DEV. = 3.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ALA A 3 83.52 49.34 REMARK 500 1 LYS A 4 69.14 -118.84 REMARK 500 1 THR A 32 22.02 -71.35 REMARK 500 1 ARG A 33 28.60 -147.04 REMARK 500 2 ALA A 3 96.08 61.97 REMARK 500 2 GLU A 10 82.28 -66.06 REMARK 500 2 ASP A 11 -43.78 -158.72 REMARK 500 2 THR A 32 34.21 -71.54 REMARK 500 2 ARG A 33 25.78 -152.48 REMARK 500 2 ARG A 35 84.36 56.55 REMARK 500 3 ASP A 11 -37.82 -155.66 REMARK 500 3 GLN A 34 78.16 52.48 REMARK 500 3 ARG A 35 162.35 62.71 REMARK 500 4 ALA A 3 48.28 -163.16 REMARK 500 4 ASP A 11 -49.07 -145.17 REMARK 500 4 GLN A 34 75.51 50.91 REMARK 500 5 GLU A 10 37.29 -71.53 REMARK 500 5 ASP A 11 81.93 -151.83 REMARK 500 5 ARG A 33 35.26 -145.45 REMARK 500 5 GLN A 34 150.76 -46.65 REMARK 500 5 ARG A 35 92.01 62.99 REMARK 500 6 GLU A 10 65.16 -67.15 REMARK 500 6 ASP A 11 72.36 -161.30 REMARK 500 6 GLN A 34 171.55 59.71 REMARK 500 7 GLU A 10 54.66 -109.41 REMARK 500 7 ASP A 11 68.67 -160.11 REMARK 500 7 LEU A 30 -78.22 -69.88 REMARK 500 7 THR A 32 12.68 52.09 REMARK 500 7 ARG A 33 30.43 -166.50 REMARK 500 8 ASP A 11 -42.42 -158.77 REMARK 500 8 GLN A 34 -156.73 51.57 REMARK 500 8 ARG A 35 -151.34 47.79 REMARK 500 9 ASP A 11 -44.18 -159.25 REMARK 500 9 THR A 32 16.67 -69.95 REMARK 500 9 GLN A 34 70.09 45.44 REMARK 500 10 GLU A 10 47.41 -68.00 REMARK 500 10 LEU A 30 -73.20 -66.32 REMARK 500 10 THR A 32 23.24 48.55 REMARK 500 10 ARG A 33 22.20 -167.59 REMARK 500 10 ARG A 35 87.83 61.19 REMARK 500 11 ALA A 3 137.56 69.21 REMARK 500 11 ASP A 11 24.31 -71.83 REMARK 500 11 ARG A 33 24.51 -140.98 REMARK 500 12 ALA A 3 53.63 -118.87 REMARK 500 12 ASP A 11 28.68 -78.05 REMARK 500 12 GLN A 34 72.59 47.90 REMARK 500 13 PRO A 8 48.93 -72.92 REMARK 500 13 ASP A 11 79.21 -154.84 REMARK 500 13 GLN A 34 93.47 46.27 REMARK 500 13 ARG A 35 103.87 -46.76 REMARK 500 REMARK 500 THIS ENTRY HAS 72 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 1 TYR A 27 0.07 SIDE CHAIN REMARK 500 7 TYR A 27 0.08 SIDE CHAIN REMARK 500 12 TYR A 27 0.06 SIDE CHAIN REMARK 500 13 TYR A 27 0.08 SIDE CHAIN REMARK 500 18 TYR A 7 0.06 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2OOO RELATED DB: PDB REMARK 900 REFINED STRUCTURE OF PYY IN SOLUTION REMARK 900 RELATED ID: 2OON RELATED DB: PDB REMARK 900 STRUCTURE OF ALA14-PYY IN SOLUTION REMARK 900 RELATED ID: 1RUU RELATED DB: PDB REMARK 900 STRUCTURE OF PYY IN DPC MICELLES DBREF 2OOP A 1 36 UNP P68005 PYY_PIG 1 36 SEQADV 2OOP TYR A 7 UNP P68005 ALA 7 ENGINEERED MUTATION SEQRES 1 A 37 TYR PRO ALA LYS PRO GLU TYR PRO GLY GLU ASP ALA SER SEQRES 2 A 37 PRO GLU GLU LEU SER ARG TYR TYR ALA SER LEU ARG HIS SEQRES 3 A 37 TYR LEU ASN LEU VAL THR ARG GLN ARG TYR NH2 HET NH2 A 37 3 HETNAM NH2 AMINO GROUP FORMUL 1 NH2 H2 N HELIX 1 1 GLU A 15 THR A 32 1 18 LINK C TYR A 36 N NH2 A 37 1555 1555 1.32 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1