HEADER HYDROLASE 26-JAN-07 2OOQ TITLE CRYSTAL STRUCTURE OF THE HUMAN RECEPTOR PHOSPHATASE PTPRT COMPND MOL_ID: 1; COMPND 2 MOLECULE: RECEPTOR-TYPE TYROSINE-PROTEIN PHOSPHATASE T; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: PTPRT; COMPND 5 SYNONYM: R-PTP-T, RPTP-RHO; COMPND 6 EC: 3.1.3.48; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: PTPRT, KIAA0283; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21 ROSETTA (DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PNIC28-BSA4 KEYWDS PROTEIN TYROSINE PHOSPHATASE, RECEPTOR, HUMAN, STRUCTURAL GENOMICS, KEYWDS 2 STRUCTURAL GENOMICS CONSORTIUM, SGC, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR E.UGOCHUKWU,I.ALFANO,A.BARR,T.KEATES,J.ESWARAN,E.SALAH,P.SAVITSKY, AUTHOR 2 G.BUNKOCZI,A.EDWARDS,C.H.ARROWSMITH,J.WEIGELT,M.SUNDSTROM,F.VON AUTHOR 3 DELFT,S.KNAPP,STRUCTURAL GENOMICS CONSORTIUM (SGC) REVDAT 7 30-AUG-23 2OOQ 1 REMARK SEQADV LINK REVDAT 6 04-APR-18 2OOQ 1 REMARK REVDAT 5 13-JUL-11 2OOQ 1 VERSN REVDAT 4 09-JUN-09 2OOQ 1 REVDAT REVDAT 3 24-FEB-09 2OOQ 1 VERSN REVDAT 2 03-FEB-09 2OOQ 1 JRNL REVDAT 1 20-FEB-07 2OOQ 0 JRNL AUTH A.J.BARR,E.UGOCHUKWU,W.H.LEE,O.N.KING,P.FILIPPAKOPOULOS, JRNL AUTH 2 I.ALFANO,P.SAVITSKY,N.A.BURGESS-BROWN,S.MULLER,S.KNAPP JRNL TITL LARGE-SCALE STRUCTURAL ANALYSIS OF THE CLASSICAL HUMAN JRNL TITL 2 PROTEIN TYROSINE PHOSPHATOME. JRNL REF CELL(CAMBRIDGE,MASS.) V. 136 352 2009 JRNL REFN ISSN 0092-8674 JRNL PMID 19167335 JRNL DOI 10.1016/J.CELL.2008.11.038 REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 89.77 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 50081 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.147 REMARK 3 R VALUE (WORKING SET) : 0.145 REMARK 3 FREE R VALUE : 0.188 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2688 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.80 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.85 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3729 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.75 REMARK 3 BIN R VALUE (WORKING SET) : 0.1930 REMARK 3 BIN FREE R VALUE SET COUNT : 196 REMARK 3 BIN FREE R VALUE : 0.2840 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4421 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 35 REMARK 3 SOLVENT ATOMS : 436 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 18.60 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 22.42 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.09000 REMARK 3 B22 (A**2) : 0.30000 REMARK 3 B33 (A**2) : -0.51000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.35000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.107 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.108 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.075 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.669 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.968 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.951 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4602 ; 0.015 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 3082 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6257 ; 1.453 ; 1.941 REMARK 3 BOND ANGLES OTHERS (DEGREES): 7431 ; 0.909 ; 3.002 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 562 ; 6.400 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 227 ;32.446 ;23.612 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 742 ;12.178 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 35 ;18.286 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 690 ; 0.089 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5141 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 968 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 899 ; 0.217 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 3230 ; 0.202 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 2262 ; 0.182 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 2349 ; 0.085 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 339 ; 0.162 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 18 ; 0.093 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 61 ; 0.260 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 11 ; 0.174 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2791 ; 3.651 ; 5.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1134 ; 1.839 ; 5.000 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4524 ; 4.816 ; 7.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1884 ; 7.122 ; 9.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1730 ; 8.471 ;11.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : 1 REMARK 3 REMARK 3 NCS GROUP NUMBER : 1 REMARK 3 CHAIN NAMES : A B REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 3 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 889 A 905 5 REMARK 3 1 B 889 B 905 5 REMARK 3 2 A 911 A 1071 5 REMARK 3 2 B 911 B 1071 5 REMARK 3 3 A 1078 A 1168 5 REMARK 3 3 B 1078 B 1168 5 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 MEDIUM POSITIONAL 1 A (A): 1571 ; 0.17 ; 0.50 REMARK 3 LOOSE POSITIONAL 1 A (A): 1858 ; 0.38 ; 5.00 REMARK 3 MEDIUM THERMAL 1 A (A**2): 1571 ; 1.43 ; 2.00 REMARK 3 LOOSE THERMAL 1 A (A**2): 1858 ; 2.65 ; 10.00 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 889 A 1168 REMARK 3 ORIGIN FOR THE GROUP (A): 14.1045 4.2965 90.3753 REMARK 3 T TENSOR REMARK 3 T11: -0.0016 T22: -0.0164 REMARK 3 T33: 0.0083 T12: 0.0026 REMARK 3 T13: 0.0362 T23: 0.0037 REMARK 3 L TENSOR REMARK 3 L11: 0.6075 L22: 0.7007 REMARK 3 L33: 2.8582 L12: 0.1452 REMARK 3 L13: 0.0334 L23: 0.3368 REMARK 3 S TENSOR REMARK 3 S11: 0.1005 S12: 0.0058 S13: 0.1767 REMARK 3 S21: 0.0939 S22: -0.0232 S23: 0.0528 REMARK 3 S31: -0.3328 S32: -0.1288 S33: -0.0774 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 888 B 1168 REMARK 3 ORIGIN FOR THE GROUP (A): -4.5917 -9.8099 44.8135 REMARK 3 T TENSOR REMARK 3 T11: -0.1091 T22: -0.1021 REMARK 3 T33: -0.0694 T12: 0.0078 REMARK 3 T13: -0.0110 T23: 0.0013 REMARK 3 L TENSOR REMARK 3 L11: 0.5843 L22: 0.5080 REMARK 3 L33: 0.9607 L12: 0.1290 REMARK 3 L13: -0.0151 L23: 0.0253 REMARK 3 S TENSOR REMARK 3 S11: -0.0179 S12: 0.0222 S13: -0.0211 REMARK 3 S21: -0.0313 S22: 0.0126 S23: 0.0165 REMARK 3 S31: 0.0146 S32: 0.0284 S33: 0.0053 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 2OOQ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 29-JAN-07. REMARK 100 THE DEPOSITION ID IS D_1000041398. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 07-JAN-07 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU RU200 REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.54180 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS HTC REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : CCP4 (SCALA) REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 52802 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 89.770 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 3.700 REMARK 200 R MERGE (I) : 0.09200 REMARK 200 R SYM (I) : 0.09200 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 16.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.90 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 3.60 REMARK 200 R MERGE FOR SHELL (I) : 0.59500 REMARK 200 R SYM FOR SHELL (I) : 0.59500 REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRIES 1RPM, 2C7S, 1LAR, 2FH7 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 44.28 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.21 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2M LICL, 0.1M HEPES, 20.0% PEG 6000, REMARK 280 10.0% ETHYLENE GLYCOL, PH 7.0, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 43.34850 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 888 REMARK 465 ASP A 957 REMARK 465 GLY A 958 REMARK 465 GLY A 1169 REMARK 465 ASN A 1170 REMARK 465 THR A 1171 REMARK 465 ALA A 1172 REMARK 465 ILE A 1173 REMARK 465 GLY B 1169 REMARK 465 ASN B 1170 REMARK 465 THR B 1171 REMARK 465 ALA B 1172 REMARK 465 ILE B 1173 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLN A 898 CG CD OE1 NE2 REMARK 470 GLN A 902 CG CD OE1 NE2 REMARK 470 LYS A 912 CD CE NZ REMARK 470 GLU A 920 CG CD OE1 OE2 REMARK 470 LYS A 930 CD CE NZ REMARK 470 GLU A 933 CG CD OE1 OE2 REMARK 470 ARG A 935 CD NE CZ NH1 NH2 REMARK 470 TYR A 940 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 ARG A 952 CD NE CZ NH1 NH2 REMARK 470 LEU A 954 CD1 CD2 REMARK 470 HIS A 974 CG ND1 CD2 CE1 NE2 REMARK 470 ARG A 975 CG CD NE CZ NH1 NH2 REMARK 470 VAL A1014 CG1 CG2 REMARK 470 ARG A1016 CG CD NE CZ NH1 NH2 REMARK 470 GLU A1127 CD OE1 OE2 REMARK 470 ASN A1128 CG OD1 ND2 REMARK 470 ARG A1139 CG CD NE CZ NH1 NH2 REMARK 470 GLN A1150 CD OE1 NE2 REMARK 470 GLN B 898 CD OE1 NE2 REMARK 470 GLN B 902 CD OE1 NE2 REMARK 470 ARG B 905 NE CZ NH1 NH2 REMARK 470 LYS B 912 CD CE NZ REMARK 470 LYS B 930 CD CE NZ REMARK 470 ARG B1016 CD NE CZ NH1 NH2 REMARK 470 PHE B1093 CD1 CD2 CE1 CE2 CZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE1 GLU B 916 O HOH B 1399 2.16 REMARK 500 O HOH B 1278 O HOH B 1315 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 VAL A1008 52.32 -114.27 REMARK 500 ASP A1026 -85.70 -135.44 REMARK 500 CYS A1106 -122.90 -129.41 REMARK 500 SER A1107 -66.16 -94.30 REMARK 500 ALA A1110 -62.43 -125.62 REMARK 500 ASN A1147 19.85 57.55 REMARK 500 VAL A1149 90.35 67.73 REMARK 500 TRP B 926 48.73 -140.61 REMARK 500 VAL B1008 52.07 -116.72 REMARK 500 ASP B1026 -77.47 -134.40 REMARK 500 CYS B1106 -124.99 -130.67 REMARK 500 SER B1107 -71.41 -93.30 REMARK 500 ALA B1110 -55.26 -123.17 REMARK 500 VAL B1149 88.23 65.05 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 HIS A 974 ARG A 975 -149.41 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 B3P A 301 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA B 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE B3P A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE B3P B 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 502 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1RPM RELATED DB: PDB REMARK 900 HUMAN RECEPTOR PROTEIN TYROSINE PHOSPHATASE MU, DOMAIN 1 REMARK 900 RELATED ID: 2C7S RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF HUMAN PROTEIN TYROSINE PHOSPHATASE KAPPA REMARK 900 RELATED ID: 1LAR RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE TANDEM PHOSPHATASE DOMAINS OF RPTP LAR REMARK 900 RELATED ID: 2FH7 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE PHOSPHATASE DOMAINS OF HUMAN PTP SIGMA DBREF 2OOQ A 890 1173 UNP O14522 PTPRT_HUMAN 890 1173 DBREF 2OOQ B 890 1173 UNP O14522 PTPRT_HUMAN 890 1173 SEQADV 2OOQ SER A 888 UNP O14522 CLONING ARTIFACT SEQADV 2OOQ MET A 889 UNP O14522 CLONING ARTIFACT SEQADV 2OOQ SER B 888 UNP O14522 CLONING ARTIFACT SEQADV 2OOQ MET B 889 UNP O14522 CLONING ARTIFACT SEQRES 1 A 286 SER MET ALA ILE ARG VAL ALA ASP LEU LEU GLN HIS ILE SEQRES 2 A 286 THR GLN MET LYS ARG GLY GLN GLY TYR GLY PHE LYS GLU SEQRES 3 A 286 GLU TYR GLU ALA LEU PRO GLU GLY GLN THR ALA SER TRP SEQRES 4 A 286 ASP THR ALA LYS GLU ASP GLU ASN ARG ASN LYS ASN ARG SEQRES 5 A 286 TYR GLY ASN ILE ILE SER TYR ASP HIS SER ARG VAL ARG SEQRES 6 A 286 LEU LEU VAL LEU ASP GLY ASP PRO HIS SER ASP TYR ILE SEQRES 7 A 286 ASN ALA ASN TYR ILE ASP GLY TYR HIS ARG PRO ARG HIS SEQRES 8 A 286 TYR ILE ALA THR GLN GLY PRO MET GLN GLU THR VAL LYS SEQRES 9 A 286 ASP PHE TRP ARG MET ILE TRP GLN GLU ASN SER ALA SER SEQRES 10 A 286 ILE VAL MET VAL THR ASN LEU VAL GLU VAL GLY ARG VAL SEQRES 11 A 286 LYS CYS VAL ARG TYR TRP PRO ASP ASP THR GLU VAL TYR SEQRES 12 A 286 GLY ASP ILE LYS VAL THR LEU ILE GLU THR GLU PRO LEU SEQRES 13 A 286 ALA GLU TYR VAL ILE ARG THR PHE THR VAL GLN LYS LYS SEQRES 14 A 286 GLY TYR HIS GLU ILE ARG GLU LEU ARG LEU PHE HIS PHE SEQRES 15 A 286 THR SER TRP PRO ASP HIS GLY VAL PRO CYS TYR ALA THR SEQRES 16 A 286 GLY LEU LEU GLY PHE VAL ARG GLN VAL LYS PHE LEU ASN SEQRES 17 A 286 PRO PRO GLU ALA GLY PRO ILE VAL VAL HIS CYS SER ALA SEQRES 18 A 286 GLY ALA GLY ARG THR GLY CYS PHE ILE ALA ILE ASP THR SEQRES 19 A 286 MET LEU ASP MET ALA GLU ASN GLU GLY VAL VAL ASP ILE SEQRES 20 A 286 PHE ASN CYS VAL ARG GLU LEU ARG ALA GLN ARG VAL ASN SEQRES 21 A 286 LEU VAL GLN THR GLU GLU GLN TYR VAL PHE VAL HIS ASP SEQRES 22 A 286 ALA ILE LEU GLU ALA CYS LEU CYS GLY ASN THR ALA ILE SEQRES 1 B 286 SER MET ALA ILE ARG VAL ALA ASP LEU LEU GLN HIS ILE SEQRES 2 B 286 THR GLN MET LYS ARG GLY GLN GLY TYR GLY PHE LYS GLU SEQRES 3 B 286 GLU TYR GLU ALA LEU PRO GLU GLY GLN THR ALA SER TRP SEQRES 4 B 286 ASP THR ALA LYS GLU ASP GLU ASN ARG ASN LYS ASN ARG SEQRES 5 B 286 TYR GLY ASN ILE ILE SER TYR ASP HIS SER ARG VAL ARG SEQRES 6 B 286 LEU LEU VAL LEU ASP GLY ASP PRO HIS SER ASP TYR ILE SEQRES 7 B 286 ASN ALA ASN TYR ILE ASP GLY TYR HIS ARG PRO ARG HIS SEQRES 8 B 286 TYR ILE ALA THR GLN GLY PRO MET GLN GLU THR VAL LYS SEQRES 9 B 286 ASP PHE TRP ARG MET ILE TRP GLN GLU ASN SER ALA SER SEQRES 10 B 286 ILE VAL MET VAL THR ASN LEU VAL GLU VAL GLY ARG VAL SEQRES 11 B 286 LYS CYS VAL ARG TYR TRP PRO ASP ASP THR GLU VAL TYR SEQRES 12 B 286 GLY ASP ILE LYS VAL THR LEU ILE GLU THR GLU PRO LEU SEQRES 13 B 286 ALA GLU TYR VAL ILE ARG THR PHE THR VAL GLN LYS LYS SEQRES 14 B 286 GLY TYR HIS GLU ILE ARG GLU LEU ARG LEU PHE HIS PHE SEQRES 15 B 286 THR SER TRP PRO ASP HIS GLY VAL PRO CYS TYR ALA THR SEQRES 16 B 286 GLY LEU LEU GLY PHE VAL ARG GLN VAL LYS PHE LEU ASN SEQRES 17 B 286 PRO PRO GLU ALA GLY PRO ILE VAL VAL HIS CYS SER ALA SEQRES 18 B 286 GLY ALA GLY ARG THR GLY CYS PHE ILE ALA ILE ASP THR SEQRES 19 B 286 MET LEU ASP MET ALA GLU ASN GLU GLY VAL VAL ASP ILE SEQRES 20 B 286 PHE ASN CYS VAL ARG GLU LEU ARG ALA GLN ARG VAL ASN SEQRES 21 B 286 LEU VAL GLN THR GLU GLU GLN TYR VAL PHE VAL HIS ASP SEQRES 22 B 286 ALA ILE LEU GLU ALA CYS LEU CYS GLY ASN THR ALA ILE HET B3P A 301 11 HET NA B 501 1 HET B3P B 301 19 HET EDO B 502 4 HETNAM B3P 2-[3-(2-HYDROXY-1,1-DIHYDROXYMETHYL-ETHYLAMINO)- HETNAM 2 B3P PROPYLAMINO]-2-HYDROXYMETHYL-PROPANE-1,3-DIOL HETNAM NA SODIUM ION HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 3 B3P 2(C11 H26 N2 O6) FORMUL 4 NA NA 1+ FORMUL 6 EDO C2 H6 O2 FORMUL 7 HOH *436(H2 O) HELIX 1 1 ASP A 895 ARG A 905 1 11 HELIX 2 2 GLY A 910 LEU A 918 1 9 HELIX 3 3 GLU A 931 ASN A 938 5 8 HELIX 4 4 TYR A 946 ARG A 950 5 5 HELIX 5 5 ASP A 959 TYR A 964 5 6 HELIX 6 6 THR A 989 ASN A 1001 1 13 HELIX 7 7 ALA A 1081 ASN A 1095 1 15 HELIX 8 8 ALA A 1110 GLY A 1130 1 21 HELIX 9 9 ASP A 1133 ARG A 1145 1 13 HELIX 10 10 THR A 1151 CYS A 1168 1 18 HELIX 11 11 ASP B 895 ALA B 917 1 23 HELIX 12 12 GLU B 931 ASN B 938 5 8 HELIX 13 13 TYR B 946 ARG B 950 5 5 HELIX 14 14 MET B 986 GLU B 988 5 3 HELIX 15 15 THR B 989 ASN B 1001 1 13 HELIX 16 16 ALA B 1081 ASN B 1095 1 15 HELIX 17 17 ALA B 1110 GLY B 1130 1 21 HELIX 18 18 ASP B 1133 ARG B 1145 1 13 HELIX 19 19 THR B 1151 CYS B 1168 1 18 SHEET 1 A 2 ILE A 891 ARG A 892 0 SHEET 2 A 2 VAL A1131 VAL A1132 -1 O VAL A1132 N ILE A 891 SHEET 1 B 8 ALA A 967 ILE A 970 0 SHEET 2 B 8 TYR A 979 THR A 982 -1 O TYR A 979 N ILE A 970 SHEET 3 B 8 ILE A1102 HIS A1105 1 O VAL A1104 N ILE A 980 SHEET 4 B 8 SER A1004 MET A1007 1 N VAL A1006 O VAL A1103 SHEET 5 B 8 ARG A1062 PHE A1069 1 O PHE A1067 N ILE A1005 SHEET 6 B 8 TYR A1046 LYS A1055 -1 N ARG A1049 O LEU A1066 SHEET 7 B 8 ILE A1033 PRO A1042 -1 N LYS A1034 O GLN A1054 SHEET 8 B 8 THR A1027 TYR A1030 -1 N GLU A1028 O VAL A1035 SHEET 1 C 2 VAL A1012 GLU A1013 0 SHEET 2 C 2 ARG A1016 VAL A1017 -1 O ARG A1016 N GLU A1013 SHEET 1 D 2 ILE B 891 ARG B 892 0 SHEET 2 D 2 VAL B1131 VAL B1132 -1 O VAL B1132 N ILE B 891 SHEET 1 E 8 ALA B 967 ILE B 970 0 SHEET 2 E 8 TYR B 979 THR B 982 -1 O TYR B 979 N ILE B 970 SHEET 3 E 8 ILE B1102 HIS B1105 1 O VAL B1104 N ILE B 980 SHEET 4 E 8 SER B1004 MET B1007 1 N VAL B1006 O VAL B1103 SHEET 5 E 8 ILE B1061 PHE B1069 1 O PHE B1067 N ILE B1005 SHEET 6 E 8 TYR B1046 LYS B1055 -1 N VAL B1053 O ARG B1062 SHEET 7 E 8 ILE B1033 PRO B1042 -1 N LYS B1034 O GLN B1054 SHEET 8 E 8 THR B1027 TYR B1030 -1 N GLU B1028 O VAL B1035 SHEET 1 F 2 VAL B1012 GLU B1013 0 SHEET 2 F 2 ARG B1016 VAL B1017 -1 O ARG B1016 N GLU B1013 LINK NA NA B 501 NE2 HIS B 978 1555 1555 3.00 SITE 1 AC1 3 HIS B 978 ILE B1102 ASP B1120 SITE 1 AC2 6 HOH A 86 HOH A 294 GLU A1039 GLU A1041 SITE 2 AC2 6 THR A1050 ARG A1065 SITE 1 AC3 10 GLU B1039 GLU B1041 THR B1050 ARG B1065 SITE 2 AC3 10 HOH B1191 HOH B1256 HOH B1371 HOH B1390 SITE 3 AC3 10 HOH B1439 HOH B1441 SITE 1 AC4 7 TRP B1072 GLY B1076 ARG B1112 GLN B1154 SITE 2 AC4 7 HOH B1229 HOH B1301 HOH B1442 CRYST1 37.186 86.697 91.120 90.00 99.89 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.026892 0.000000 0.004689 0.00000 SCALE2 0.000000 0.011534 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011140 0.00000