HEADER IMMUNE SYSTEM 26-JAN-07 2OP4 TITLE CRYSTAL STRUCTURE OF QUORUM-QUENCHING ANTIBODY 1G9 COMPND MOL_ID: 1; COMPND 2 MOLECULE: MURINE ANTIBODY FAB RS2-1G9 LAMBDA LIGHT CHAIN; COMPND 3 CHAIN: L; COMPND 4 MOL_ID: 2; COMPND 5 MOLECULE: MURINE ANTIBODY FAB RS2-1G9 IGG1 HEAVY CHAIN; COMPND 6 CHAIN: H SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: HOUSE MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 STRAIN: BALB/C; SOURCE 6 OTHER_DETAILS: PURIFIED FROM ASCITIC FLUID; SOURCE 7 MOL_ID: 2; SOURCE 8 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 9 ORGANISM_COMMON: HOUSE MOUSE; SOURCE 10 ORGANISM_TAXID: 10090; SOURCE 11 STRAIN: BALB/C; SOURCE 12 OTHER_DETAILS: PURIFIED FROM ASCITIC FLUID KEYWDS IMMUNOGLOBULIN, ANTIBODY, FAB, INDUCED FIT, QUORUM SENSING, KEYWDS 2 HOMOSERINE LACTONE, IMMUNE SYSTEM EXPDTA X-RAY DIFFRACTION AUTHOR R.N.KIRCHDOERFER,E.W.DEBLER,I.A.WILSON REVDAT 4 30-AUG-23 2OP4 1 REMARK REVDAT 3 13-JUL-11 2OP4 1 VERSN REVDAT 2 24-FEB-09 2OP4 1 VERSN REVDAT 1 15-MAY-07 2OP4 0 JRNL AUTH E.W.DEBLER,G.F.KAUFMANN,R.N.KIRCHDOERFER,J.M.MEE,K.D.JANDA, JRNL AUTH 2 I.A.WILSON JRNL TITL CRYSTAL STRUCTURES OF A QUORUM-QUENCHING ANTIBODY. JRNL REF J.MOL.BIOL. V. 368 1392 2007 JRNL REFN ISSN 0022-2836 JRNL PMID 17400249 JRNL DOI 10.1016/J.JMB.2007.02.081 REMARK 2 REMARK 2 RESOLUTION. 2.85 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.3.0017 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.85 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 35.40 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 11064 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.203 REMARK 3 R VALUE (WORKING SET) : 0.200 REMARK 3 FREE R VALUE : 0.263 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.800 REMARK 3 FREE R VALUE TEST SET COUNT : 556 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.85 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.92 REMARK 3 REFLECTION IN BIN (WORKING SET) : 771 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.88 REMARK 3 BIN R VALUE (WORKING SET) : 0.3290 REMARK 3 BIN FREE R VALUE SET COUNT : 46 REMARK 3 BIN FREE R VALUE : 0.5750 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3277 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 4 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 83.50 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 50.95 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.47000 REMARK 3 B22 (A**2) : 0.71000 REMARK 3 B33 (A**2) : -0.25000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.416 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.327 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 39.254 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.951 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.922 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3372 ; 0.013 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 2187 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4614 ; 1.488 ; 1.937 REMARK 3 BOND ANGLES OTHERS (DEGREES): 5354 ; 0.837 ; 3.002 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 426 ; 7.462 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 127 ;36.126 ;24.094 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 506 ;18.421 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 10 ;12.196 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 528 ; 0.079 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3741 ; 0.004 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 669 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 613 ; 0.227 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 2187 ; 0.215 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1653 ; 0.200 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 1955 ; 0.096 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 97 ; 0.128 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): 1 ; 0.041 ; 0.200 REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 15 ; 0.242 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 24 ; 0.302 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 5 ; 0.188 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2609 ; 0.527 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 865 ; 0.079 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3475 ; 0.721 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1506 ; 1.060 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1139 ; 1.599 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : L 1 L 107 REMARK 3 ORIGIN FOR THE GROUP (A): 0.4187 9.9980 15.9355 REMARK 3 T TENSOR REMARK 3 T11: -0.2391 T22: 0.0926 REMARK 3 T33: -0.0774 T12: 0.0117 REMARK 3 T13: 0.0806 T23: 0.1077 REMARK 3 L TENSOR REMARK 3 L11: 3.3467 L22: 5.8577 REMARK 3 L33: 3.6793 L12: -1.5429 REMARK 3 L13: 0.1363 L23: -0.4965 REMARK 3 S TENSOR REMARK 3 S11: -0.0552 S12: -0.4025 S13: -0.3481 REMARK 3 S21: 0.0604 S22: 0.0899 S23: 0.4187 REMARK 3 S31: 0.1718 S32: -0.1849 S33: -0.0347 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : L 108 L 212 REMARK 3 ORIGIN FOR THE GROUP (A): -7.6062 10.6013 -15.0959 REMARK 3 T TENSOR REMARK 3 T11: -0.1586 T22: -0.0727 REMARK 3 T33: -0.0235 T12: 0.0461 REMARK 3 T13: -0.0359 T23: 0.0553 REMARK 3 L TENSOR REMARK 3 L11: 2.5117 L22: 3.1706 REMARK 3 L33: 7.3684 L12: 0.2710 REMARK 3 L13: 0.5411 L23: 3.1680 REMARK 3 S TENSOR REMARK 3 S11: -0.0795 S12: 0.0457 S13: -0.1388 REMARK 3 S21: 0.4307 S22: 0.0494 S23: 0.3492 REMARK 3 S31: 0.6115 S32: -0.2845 S33: 0.0302 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : H 1 H 113 REMARK 3 ORIGIN FOR THE GROUP (A): 13.0932 -5.2739 9.3845 REMARK 3 T TENSOR REMARK 3 T11: -0.0534 T22: -0.0435 REMARK 3 T33: -0.0977 T12: -0.0310 REMARK 3 T13: 0.0185 T23: 0.1456 REMARK 3 L TENSOR REMARK 3 L11: 2.7220 L22: 2.9649 REMARK 3 L33: 5.5828 L12: -1.7225 REMARK 3 L13: 1.1206 L23: 0.5363 REMARK 3 S TENSOR REMARK 3 S11: 0.1576 S12: -0.1933 S13: -0.5400 REMARK 3 S21: -0.3031 S22: 0.0469 S23: 0.2498 REMARK 3 S31: 0.3100 S32: -0.2704 S33: -0.2045 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : H 114 H 228 REMARK 3 ORIGIN FOR THE GROUP (A): 6.6377 10.8423 -23.0710 REMARK 3 T TENSOR REMARK 3 T11: -0.1800 T22: 0.0896 REMARK 3 T33: -0.2179 T12: 0.0341 REMARK 3 T13: -0.0573 T23: -0.1929 REMARK 3 L TENSOR REMARK 3 L11: 4.8911 L22: 8.1181 REMARK 3 L33: 5.9276 L12: -2.0801 REMARK 3 L13: 0.8131 L23: 0.5885 REMARK 3 S TENSOR REMARK 3 S11: -0.0819 S12: 0.0740 S13: 0.1500 REMARK 3 S21: -0.2550 S22: 0.4847 S23: 0.1204 REMARK 3 S31: -0.0483 S32: 0.4336 S33: -0.4027 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 2OP4 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 09-FEB-07. REMARK 100 THE DEPOSITION ID IS D_1000041412. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 13-JAN-07 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL11-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.03317 REMARK 200 MONOCHROMATOR : SINGLE CRYSTAL SI(111) BENT REMARK 200 (HORIZONTAL FOCUSING) REMARK 200 OPTICS : FLAT MIRROR (VERTICAL FOCUSING) REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 325 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 11938 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.850 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 3.600 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.06200 REMARK 200 FOR THE DATA SET : 26.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.85 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.92 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : 3.60 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.53400 REMARK 200 FOR SHELL : 2.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 2NTF REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.43 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.53 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 10% (W/V) PEG 8000, 0.1M IMIDAZOLE, PH REMARK 280 6.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 28.46250 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 58.07150 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 36.02050 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 58.07150 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 28.46250 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 36.02050 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE ENTRY CONTAINS THE CRYSTALLOGRAPHIC ASYMMETRIC UNIT REMARK 300 WHICH CONSISTS OF 1 BIOLOGICAL MOLECULE: LH. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4150 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19290 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -22.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: L, H REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASN H 131 REMARK 465 ALA H 132 REMARK 465 ALA H 133 REMARK 465 SER H 134 REMARK 465 GLN H 135 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR L 51 -58.07 72.83 REMARK 500 ARG L 61 -41.08 -27.49 REMARK 500 SER L 84 167.15 179.85 REMARK 500 ASN L 94 -11.87 95.48 REMARK 500 ASP L 151 47.69 35.35 REMARK 500 PRO H 14 92.33 -61.52 REMARK 500 PRO H 41 109.97 -31.61 REMARK 500 SER H 82B 76.31 55.71 REMARK 500 ASN H 100 0.98 -152.81 REMARK 500 ASN H 100A -62.68 -97.96 REMARK 500 SER H 112 143.90 -170.73 REMARK 500 PHE H 148 139.00 -173.57 REMARK 500 SER H 167 -55.25 -121.63 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO H 229 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2NTF RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF QUORUM-QUENCHING ANTIBODY 1G9 IN COMPLEX WITH REMARK 900 AN N-ACYL-L-HOMOSERINE LACTONE ANALOG REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE SEQUENCES OF THE FAB COMPLEXES ARE NOT REMARK 999 YET AVAILABLE IN ANY SEQUENCE DATABASES. REMARK 999 THE RESIDUE NUMBERING IN CHAINS L AND H REMARK 999 FOLLOWS THE STANDARD KABAT NUMBERING SCHEME DBREF 2OP4 L 1 212 PDB 2OP4 2OP4 1 212 DBREF 2OP4 H 1 228 PDB 2OP4 2OP4 1 228 SEQRES 1 L 212 GLN ALA VAL VAL THR GLN GLU SER ALA LEU THR THR SER SEQRES 2 L 212 PRO GLY GLU THR VAL THR LEU THR CYS ARG SER SER THR SEQRES 3 L 212 GLY ALA VAL THR THR ARG ASN TYR ALA ASN TRP VAL GLN SEQRES 4 L 212 GLU LYS PRO ASP HIS PHE PHE THR GLY LEU ILE GLY ASP SEQRES 5 L 212 THR ASN ASN ARG ALA PRO GLY VAL PRO ALA ARG PHE SER SEQRES 6 L 212 GLY SER LEU ILE GLY HIS LYS ALA ALA LEU THR ILE THR SEQRES 7 L 212 GLY ALA GLN THR GLU ASP GLU SER VAL TYR PHE CYS ALA SEQRES 8 L 212 LEU TRP TYR SER ASN HIS TRP VAL PHE GLY GLY GLY THR SEQRES 9 L 212 LYS LEU THR VAL LEU GLY GLN PRO LYS SER SER PRO SER SEQRES 10 L 212 VAL THR LEU PHE PRO PRO SER SER GLU GLU LEU GLU THR SEQRES 11 L 212 ASN LYS ALA THR LEU VAL CYS THR ILE THR ASP PHE TYR SEQRES 12 L 212 PRO GLY VAL VAL THR VAL ASP TRP LYS VAL ASP GLY THR SEQRES 13 L 212 PRO VAL THR GLN GLY MET GLU THR THR GLN PRO SER LYS SEQRES 14 L 212 GLN SER ASN ASN LYS TYR MET ALA SER SER TYR LEU THR SEQRES 15 L 212 LEU THR ALA GLY ALA TRP GLU ARG HIS SER SER TYR SER SEQRES 16 L 212 CYS GLN VAL THR HIS GLU GLY HIS THR VAL GLU LYS SER SEQRES 17 L 212 LEU SER ARG ALA SEQRES 1 H 222 GLN VAL GLN LEU GLN GLN SER GLY SER GLU LEU VAL ARG SEQRES 2 H 222 PRO GLY ALA SER VAL LYS LEU SER CYS LYS ALA SER GLY SEQRES 3 H 222 TYR THR PHE THR THR TYR TRP ILE HIS TRP VAL LYS GLN SEQRES 4 H 222 ARG PRO GLY GLN GLY LEU GLU TRP ILE GLY THR ILE TYR SEQRES 5 H 222 PRO GLY SER ASP ASN THR TYR TYR ASP GLU LYS PHE LYS SEQRES 6 H 222 ASN LYS ALA THR LEU THR VAL ASP THR SER SER SER THR SEQRES 7 H 222 ALA PHE MET GLN LEU SER SER LEU THR SER GLU ASP SER SEQRES 8 H 222 ALA VAL TYR PHE CYS THR ARG GLY SER LEU TYR TYR ASN SEQRES 9 H 222 ASN TYR GLY TRP PHE GLY TYR TRP GLY GLN GLY THR LEU SEQRES 10 H 222 VAL THR VAL SER ALA ALA LYS THR THR PRO PRO SER VAL SEQRES 11 H 222 TYR PRO LEU ALA PRO GLY SER ASN ALA ALA SER GLN SER SEQRES 12 H 222 MET VAL THR LEU GLY CYS LEU VAL LYS GLY TYR PHE PRO SEQRES 13 H 222 GLU PRO VAL THR VAL THR TRP ASN SER GLY SER LEU SER SEQRES 14 H 222 SER GLY VAL HIS THR PHE PRO ALA VAL LEU GLN SER ASP SEQRES 15 H 222 LEU TYR THR LEU THR SER SER VAL THR VAL PRO SER SER SEQRES 16 H 222 THR TRP PRO SER GLN THR VAL THR CYS ASN VAL ALA HIS SEQRES 17 H 222 PRO ALA SER SER THR LYS VAL ASP LYS LYS ILE VAL PRO SEQRES 18 H 222 ARG HET EDO H 229 4 HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 3 EDO C2 H6 O2 HELIX 1 1 THR L 28 TYR L 32 5 5 HELIX 2 2 GLN L 79 GLU L 83 5 5 HELIX 3 3 SER L 121 THR L 127 1 7 HELIX 4 4 ALA L 183 GLU L 187 1 5 HELIX 5 5 THR H 28 TYR H 32 5 5 HELIX 6 6 GLU H 61 LYS H 64 5 4 HELIX 7 7 THR H 83 SER H 87 5 5 HELIX 8 8 SER H 196 GLN H 203 1 6 SHEET 1 A 4 VAL L 4 GLN L 6 0 SHEET 2 A 4 THR L 18 SER L 25 -1 O ARG L 24 N THR L 5 SHEET 3 A 4 LYS L 70 THR L 76 -1 O LEU L 73 N LEU L 21 SHEET 4 A 4 PHE L 62 ILE L 67 -1 N SER L 63 O THR L 74 SHEET 1 B 6 ALA L 9 THR L 13 0 SHEET 2 B 6 THR L 102 VAL L 106 1 O THR L 105 N LEU L 11 SHEET 3 B 6 SER L 84 TYR L 92 -1 N SER L 84 O LEU L 104 SHEET 4 B 6 ASN L 34 LYS L 39 -1 N VAL L 36 O PHE L 87 SHEET 5 B 6 PHE L 43 GLY L 49 -1 O ILE L 48 N TRP L 35 SHEET 6 B 6 ASN L 53 ARG L 54 -1 O ASN L 53 N GLY L 49 SHEET 1 C 4 ALA L 9 THR L 13 0 SHEET 2 C 4 THR L 102 VAL L 106 1 O THR L 105 N LEU L 11 SHEET 3 C 4 SER L 84 TYR L 92 -1 N SER L 84 O LEU L 104 SHEET 4 C 4 HIS L 95 PHE L 98 -1 O HIS L 95 N TYR L 92 SHEET 1 D 4 SER L 114 PHE L 118 0 SHEET 2 D 4 LYS L 129 PHE L 139 -1 O THR L 135 N THR L 116 SHEET 3 D 4 TYR L 173 THR L 182 -1 O LEU L 181 N ALA L 130 SHEET 4 D 4 MET L 159 THR L 161 -1 N GLU L 160 O TYR L 178 SHEET 1 E 4 SER L 114 PHE L 118 0 SHEET 2 E 4 LYS L 129 PHE L 139 -1 O THR L 135 N THR L 116 SHEET 3 E 4 TYR L 173 THR L 182 -1 O LEU L 181 N ALA L 130 SHEET 4 E 4 SER L 165 LYS L 166 -1 N SER L 165 O MET L 174 SHEET 1 F 4 THR L 153 PRO L 154 0 SHEET 2 F 4 THR L 145 VAL L 150 -1 N VAL L 150 O THR L 153 SHEET 3 F 4 SER L 191 THR L 197 -1 O GLN L 195 N ASP L 147 SHEET 4 F 4 THR L 204 SER L 210 -1 O LYS L 207 N CYS L 194 SHEET 1 G 4 GLN H 3 GLN H 6 0 SHEET 2 G 4 VAL H 18 SER H 25 -1 O SER H 25 N GLN H 3 SHEET 3 G 4 THR H 77 LEU H 82 -1 O LEU H 82 N VAL H 18 SHEET 4 G 4 ALA H 67 ASP H 72 -1 N THR H 70 O PHE H 79 SHEET 1 H 6 SER H 9 VAL H 12 0 SHEET 2 H 6 THR H 107 VAL H 111 1 O THR H 110 N VAL H 12 SHEET 3 H 6 ALA H 88 ARG H 94 -1 N ALA H 88 O VAL H 109 SHEET 4 H 6 ILE H 34 GLN H 39 -1 N GLN H 39 O VAL H 89 SHEET 5 H 6 LEU H 45 ILE H 51 -1 O GLU H 46 N LYS H 38 SHEET 6 H 6 THR H 57 TYR H 59 -1 O TYR H 58 N THR H 50 SHEET 1 I 4 SER H 9 VAL H 12 0 SHEET 2 I 4 THR H 107 VAL H 111 1 O THR H 110 N VAL H 12 SHEET 3 I 4 ALA H 88 ARG H 94 -1 N ALA H 88 O VAL H 109 SHEET 4 I 4 TYR H 102 TRP H 103 -1 O TYR H 102 N ARG H 94 SHEET 1 J 4 SER H 120 LEU H 124 0 SHEET 2 J 4 MET H 137 TYR H 147 -1 O GLY H 141 N LEU H 124 SHEET 3 J 4 LEU H 184 PRO H 194 -1 O LEU H 187 N VAL H 144 SHEET 4 J 4 VAL H 171 THR H 173 -1 N HIS H 172 O SER H 190 SHEET 1 K 4 SER H 120 LEU H 124 0 SHEET 2 K 4 MET H 137 TYR H 147 -1 O GLY H 141 N LEU H 124 SHEET 3 K 4 LEU H 184 PRO H 194 -1 O LEU H 187 N VAL H 144 SHEET 4 K 4 VAL H 177 GLN H 181 -1 N GLN H 181 O LEU H 184 SHEET 1 L 3 THR H 153 TRP H 157 0 SHEET 2 L 3 THR H 206 HIS H 212 -1 O ASN H 209 N THR H 156 SHEET 3 L 3 THR H 217 LYS H 222 -1 O VAL H 219 N VAL H 210 SSBOND 1 CYS L 23 CYS L 88 1555 1555 2.06 SSBOND 2 CYS L 134 CYS L 194 1555 1555 2.05 SSBOND 3 CYS H 22 CYS H 92 1555 1555 2.04 SSBOND 4 CYS H 142 CYS H 208 1555 1555 2.34 CISPEP 1 TYR L 140 PRO L 141 0 1.21 CISPEP 2 PHE H 148 PRO H 149 0 -6.92 CISPEP 3 GLU H 150 PRO H 151 0 -8.88 CISPEP 4 TRP H 199 PRO H 200 0 12.01 SITE 1 AC1 7 HIS H 35 ASN H 100 GLY H 100C TRP H 100D SITE 2 AC1 7 PHE H 100E ASN L 34 TRP L 96 CRYST1 56.925 72.041 116.143 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017567 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013881 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008610 0.00000