HEADER CELL ADHESION 29-JAN-07 2OPE TITLE CRYSTAL STRUCTURE OF THE NEISSERIA MENINGITIDIS MINOR TYPE IV PILIN, TITLE 2 PILX, IN SPACE GROUP P43 COMPND MOL_ID: 1; COMPND 2 MOLECULE: PILX; COMPND 3 CHAIN: A, B, C, D; COMPND 4 FRAGMENT: RESIDUES 29-152, PLUS FOUR N-TERMINAL RESIDUES FROM THE COMPND 5 EXPRESSION CONSTRUCT; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: NEISSERIA MENINGITIDIS; SOURCE 3 ORGANISM_TAXID: 487; SOURCE 4 STRAIN: 8013; SOURCE 5 GENE: PILX; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PMAL-P2X KEYWDS NEISSERIA MENINGITIDIS, TYPE IV PILIN, PILX, MINOR PILIN, BACTERIAL KEYWDS 2 PATHOGENESIS, ADHESION, AGGREGATION, FILAMENT, CELL ADHESION EXPDTA X-RAY DIFFRACTION AUTHOR D.H.DYER,S.HELAINE,V.PELICIC,K.T.FOREST REVDAT 4 27-DEC-23 2OPE 1 REMARK REVDAT 3 18-OCT-17 2OPE 1 REMARK REVDAT 2 24-FEB-09 2OPE 1 VERSN REVDAT 1 23-OCT-07 2OPE 0 JRNL AUTH S.HELAINE,D.H.DYER,X.NASSIF,V.PELICIC,K.T.FOREST JRNL TITL 3D STRUCTURE/FUNCTION ANALYSIS OF PILX REVEALS HOW MINOR JRNL TITL 2 PILINS CAN MODULATE THE VIRULENCE PROPERTIES OF TYPE IV JRNL TITL 3 PILI. JRNL REF PROC.NATL.ACAD.SCI.USA V. 104 15888 2007 JRNL REFN ISSN 0027-8424 JRNL PMID 17893339 JRNL DOI 10.1073/PNAS.0707581104 REMARK 2 REMARK 2 RESOLUTION. 2.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 25.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 98.6 REMARK 3 NUMBER OF REFLECTIONS : 19111 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.212 REMARK 3 R VALUE (WORKING SET) : 0.208 REMARK 3 FREE R VALUE : 0.279 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1033 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.40 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.46 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1201 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 86.09 REMARK 3 BIN R VALUE (WORKING SET) : 0.2170 REMARK 3 BIN FREE R VALUE SET COUNT : 68 REMARK 3 BIN FREE R VALUE : 0.2900 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3622 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 181 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 47.08 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.05000 REMARK 3 B22 (A**2) : 0.05000 REMARK 3 B33 (A**2) : -0.10000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.504 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.305 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.205 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 16.586 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.947 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.915 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3693 ; 0.018 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4976 ; 1.486 ; 1.954 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 457 ; 6.603 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 161 ;36.091 ;24.534 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 651 ;15.934 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 16 ;16.753 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 543 ; 0.111 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2748 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1839 ; 0.233 ; 0.300 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 2540 ; 0.319 ; 0.500 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 345 ; 0.228 ; 0.500 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 76 ; 0.265 ; 0.300 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 12 ; 0.189 ; 0.500 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2349 ; 1.027 ; 2.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3679 ; 1.598 ; 3.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1538 ; 1.159 ; 2.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1297 ; 1.634 ; 3.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: THE P43 STRUCTURE WAS INITIALLY SOLVED REMARK 3 BY SAD PHASING USING SEMET-SUBSTITUTED PILX. THIS INITIAL MODEL REMARK 3 WAS USED FOR MOLECULAR REPLACEMENT TO SOLVE THE COMPANION C2221 REMARK 3 STRUCTURE (2OPD) FOR WHICH THE DATA ARE SUBSTANTIALLY BETTER. REMARK 3 AFTER THAT STRUCTURE WAS REFINED, IT WAS USED AS THE MOLECULAR REMARK 3 REPLACEMENT MODEL FOR STRUCTURE SOLUTION OF THE P43 STRUCTURE REMARK 3 USING NATIVE DATA COLLECTED ON A ROTATING ANODE. REMARK 4 REMARK 4 2OPE COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 07-FEB-07. REMARK 100 THE DEPOSITION ID IS D_1000041422. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 18-MAY-05 REMARK 200 TEMPERATURE (KELVIN) : 98 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : BRUKER AXS MICROSTAR REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : GRADED MULTILAYER MIRRORS REMARK 200 OPTICS : MONTEL 200 REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : BRUKER PROTEUM REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO, HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 20280 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.400 REMARK 200 RESOLUTION RANGE LOW (A) : 25.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.6 REMARK 200 DATA REDUNDANCY : 6.400 REMARK 200 R MERGE (I) : 0.07200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 9.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.49 REMARK 200 COMPLETENESS FOR SHELL (%) : 87.2 REMARK 200 DATA REDUNDANCY IN SHELL : 3.10 REMARK 200 R MERGE FOR SHELL (I) : 0.24300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: COMBINATION OF SAD AND REMARK 200 MOL. REPLACEMENT REMARK 200 SOFTWARE USED: SOLVE FOR SAD PHASING, RESOLVE FOR SAD PHASING REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.40 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.29 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 22% PEG 8K, 120 MM LISO4, 100 MM BIS REMARK 280 TRIS, PH 6.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y,X,Z+3/4 REMARK 290 4555 Y,-X,Z+1/4 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 44.83150 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 67.24725 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 22.41575 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3, 4 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: DATA SUGGEST THE MONOMER ASSEMBLES WITHIN THE TYPE IV PILUS REMARK 300 FILAMENT, PROBABLY REPLACING ONE OF THE MAJOR SUBUNITS IN THE REMARK 300 HELICAL ASSEMBLY. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 4 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ILE A 25 REMARK 465 SER A 26 REMARK 465 GLU A 27 REMARK 465 SER A 148 REMARK 465 ASN A 149 REMARK 465 ARG A 150 REMARK 465 LYS A 151 REMARK 465 LYS A 152 REMARK 465 ILE B 25 REMARK 465 SER B 26 REMARK 465 GLU B 27 REMARK 465 SER B 148 REMARK 465 ASN B 149 REMARK 465 ARG B 150 REMARK 465 LYS B 151 REMARK 465 LYS B 152 REMARK 465 ILE C 25 REMARK 465 SER C 26 REMARK 465 GLU C 27 REMARK 465 PHE C 28 REMARK 465 ASN C 91 REMARK 465 LYS C 92 REMARK 465 GLU C 93 REMARK 465 LYS C 94 REMARK 465 PRO C 95 REMARK 465 SER C 140 REMARK 465 ASP C 141 REMARK 465 PHE C 147 REMARK 465 SER C 148 REMARK 465 ASN C 149 REMARK 465 ARG C 150 REMARK 465 LYS C 151 REMARK 465 LYS C 152 REMARK 465 ILE D 25 REMARK 465 SER D 26 REMARK 465 GLU D 27 REMARK 465 VAL D 90 REMARK 465 ASN D 91 REMARK 465 LYS D 92 REMARK 465 GLU D 93 REMARK 465 SER D 140 REMARK 465 ASP D 141 REMARK 465 SER D 148 REMARK 465 ASN D 149 REMARK 465 ARG D 150 REMARK 465 LYS D 151 REMARK 465 LYS D 152 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS C 30 CG CD CE NZ REMARK 470 LYS C 48 CG CD CE NZ REMARK 470 LYS C 78 CG CD CE NZ REMARK 470 PHE D 28 CG CD1 CD2 CE1 CE2 CZ REMARK 470 GLN D 35 CG CD OE1 NE2 REMARK 470 LYS D 78 CB CG CD CE NZ REMARK 470 PHE D 147 CG CD1 CD2 CE1 CE2 CZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 LYS C 30 C LYS C 30 O 0.123 REMARK 500 ARG C 96 N ARG C 96 CA 0.253 REMARK 500 ARG C 96 CA ARG C 96 CB 0.170 REMARK 500 ALA C 146 C ALA C 146 O 0.201 REMARK 500 LEU D 56 CB LEU D 56 CG 0.187 REMARK 500 LEU D 56 CG LEU D 56 CD1 0.303 REMARK 500 LEU D 56 C ASP D 57 N 0.195 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 76 128.22 -37.65 REMARK 500 SER A 140 -127.36 49.72 REMARK 500 LYS B 53 58.89 -90.55 REMARK 500 ASN B 76 126.93 -35.80 REMARK 500 THR B 111 -39.58 -132.34 REMARK 500 SER B 140 -121.33 55.87 REMARK 500 THR C 111 -24.79 -146.61 REMARK 500 PRO D 77 -4.61 -57.18 REMARK 500 THR D 111 -39.27 -142.25 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2PIL RELATED DB: PDB REMARK 900 NEISSERIA GONORRHOEAE PILIN REMARK 900 RELATED ID: 2HI2 RELATED DB: PDB REMARK 900 NEISSERIA GONORRHOEAE PILIN REMARK 900 RELATED ID: 2OPD RELATED DB: PDB REMARK 900 C2221 CRYSTAL FORM STRUCTURE OF PILX DBREF 2OPE A 25 152 PDB 2OPE 2OPE 25 152 DBREF 2OPE B 25 152 PDB 2OPE 2OPE 25 152 DBREF 2OPE C 25 152 PDB 2OPE 2OPE 25 152 DBREF 2OPE D 25 152 PDB 2OPE 2OPE 25 152 SEQRES 1 A 128 ILE SER GLU PHE GLU LYS GLY TYR GLN SER GLN LEU TYR SEQRES 2 A 128 THR GLU MET VAL GLY ILE ASN ASN ILE SER LYS GLN PHE SEQRES 3 A 128 ILE LEU LYS ASN PRO LEU ASP ASP ASN GLN THR ILE LYS SEQRES 4 A 128 SER LYS LEU GLU ARG PHE VAL SER GLY TYR LYS MET ASN SEQRES 5 A 128 PRO LYS ILE ALA GLU LYS TYR ASN VAL SER VAL HIS PHE SEQRES 6 A 128 VAL ASN LYS GLU LYS PRO ARG ALA TYR SER LEU VAL GLY SEQRES 7 A 128 VAL PRO LYS THR GLY THR GLY TYR THR LEU SER VAL TRP SEQRES 8 A 128 MET ASN SER VAL GLY ASP GLY TYR LYS CYS ARG ASP ALA SEQRES 9 A 128 ALA SER ALA ARG ALA HIS LEU GLU THR LEU SER SER ASP SEQRES 10 A 128 VAL GLY CYS GLU ALA PHE SER ASN ARG LYS LYS SEQRES 1 B 128 ILE SER GLU PHE GLU LYS GLY TYR GLN SER GLN LEU TYR SEQRES 2 B 128 THR GLU MET VAL GLY ILE ASN ASN ILE SER LYS GLN PHE SEQRES 3 B 128 ILE LEU LYS ASN PRO LEU ASP ASP ASN GLN THR ILE LYS SEQRES 4 B 128 SER LYS LEU GLU ARG PHE VAL SER GLY TYR LYS MET ASN SEQRES 5 B 128 PRO LYS ILE ALA GLU LYS TYR ASN VAL SER VAL HIS PHE SEQRES 6 B 128 VAL ASN LYS GLU LYS PRO ARG ALA TYR SER LEU VAL GLY SEQRES 7 B 128 VAL PRO LYS THR GLY THR GLY TYR THR LEU SER VAL TRP SEQRES 8 B 128 MET ASN SER VAL GLY ASP GLY TYR LYS CYS ARG ASP ALA SEQRES 9 B 128 ALA SER ALA ARG ALA HIS LEU GLU THR LEU SER SER ASP SEQRES 10 B 128 VAL GLY CYS GLU ALA PHE SER ASN ARG LYS LYS SEQRES 1 C 128 ILE SER GLU PHE GLU LYS GLY TYR GLN SER GLN LEU TYR SEQRES 2 C 128 THR GLU MET VAL GLY ILE ASN ASN ILE SER LYS GLN PHE SEQRES 3 C 128 ILE LEU LYS ASN PRO LEU ASP ASP ASN GLN THR ILE LYS SEQRES 4 C 128 SER LYS LEU GLU ARG PHE VAL SER GLY TYR LYS MET ASN SEQRES 5 C 128 PRO LYS ILE ALA GLU LYS TYR ASN VAL SER VAL HIS PHE SEQRES 6 C 128 VAL ASN LYS GLU LYS PRO ARG ALA TYR SER LEU VAL GLY SEQRES 7 C 128 VAL PRO LYS THR GLY THR GLY TYR THR LEU SER VAL TRP SEQRES 8 C 128 MET ASN SER VAL GLY ASP GLY TYR LYS CYS ARG ASP ALA SEQRES 9 C 128 ALA SER ALA ARG ALA HIS LEU GLU THR LEU SER SER ASP SEQRES 10 C 128 VAL GLY CYS GLU ALA PHE SER ASN ARG LYS LYS SEQRES 1 D 128 ILE SER GLU PHE GLU LYS GLY TYR GLN SER GLN LEU TYR SEQRES 2 D 128 THR GLU MET VAL GLY ILE ASN ASN ILE SER LYS GLN PHE SEQRES 3 D 128 ILE LEU LYS ASN PRO LEU ASP ASP ASN GLN THR ILE LYS SEQRES 4 D 128 SER LYS LEU GLU ARG PHE VAL SER GLY TYR LYS MET ASN SEQRES 5 D 128 PRO LYS ILE ALA GLU LYS TYR ASN VAL SER VAL HIS PHE SEQRES 6 D 128 VAL ASN LYS GLU LYS PRO ARG ALA TYR SER LEU VAL GLY SEQRES 7 D 128 VAL PRO LYS THR GLY THR GLY TYR THR LEU SER VAL TRP SEQRES 8 D 128 MET ASN SER VAL GLY ASP GLY TYR LYS CYS ARG ASP ALA SEQRES 9 D 128 ALA SER ALA ARG ALA HIS LEU GLU THR LEU SER SER ASP SEQRES 10 D 128 VAL GLY CYS GLU ALA PHE SER ASN ARG LYS LYS FORMUL 5 HOH *181(H2 O) HELIX 1 1 PHE A 28 ILE A 51 1 24 HELIX 2 2 ASP A 58 TYR A 73 1 16 HELIX 3 3 ASN A 76 GLU A 81 1 6 HELIX 4 4 ASP A 127 HIS A 134 1 8 HELIX 5 5 PHE B 28 ILE B 51 1 24 HELIX 6 6 ASP B 58 TYR B 73 1 16 HELIX 7 7 ASN B 76 GLU B 81 1 6 HELIX 8 8 ASP B 127 HIS B 134 1 8 HELIX 9 9 GLU C 29 ASN C 54 1 26 HELIX 10 10 ASP C 58 TYR C 73 1 16 HELIX 11 11 ASN C 76 GLU C 81 1 6 HELIX 12 12 ASP C 127 HIS C 134 1 8 HELIX 13 13 PHE D 28 ASN D 54 1 27 HELIX 14 14 ASP D 58 GLY D 72 1 15 HELIX 15 15 ASN D 76 GLU D 81 1 6 HELIX 16 16 ASP D 127 ALA D 133 1 7 SHEET 1 A 6 TYR A 83 PHE A 89 0 SHEET 2 A 6 TYR A 98 PRO A 104 -1 O VAL A 103 N ASN A 84 SHEET 3 A 6 SER A 113 ASN A 117 -1 O VAL A 114 N GLY A 102 SHEET 4 A 6 GLY A 122 CYS A 125 -1 O CYS A 125 N SER A 113 SHEET 5 A 6 VAL A 142 ALA A 146 -1 O GLU A 145 N LYS A 124 SHEET 6 A 6 LEU A 138 SER A 139 -1 N SER A 139 O VAL A 142 SHEET 1 B 6 TYR B 83 PHE B 89 0 SHEET 2 B 6 TYR B 98 PRO B 104 -1 O VAL B 103 N ASN B 84 SHEET 3 B 6 SER B 113 ASN B 117 -1 O VAL B 114 N GLY B 102 SHEET 4 B 6 GLY B 122 CYS B 125 -1 O CYS B 125 N SER B 113 SHEET 5 B 6 VAL B 142 ALA B 146 -1 O GLU B 145 N LYS B 124 SHEET 6 B 6 LEU B 138 SER B 139 -1 N SER B 139 O VAL B 142 SHEET 1 C 5 TYR C 83 HIS C 88 0 SHEET 2 C 5 SER C 99 PRO C 104 -1 O VAL C 101 N SER C 86 SHEET 3 C 5 SER C 113 ASN C 117 -1 O VAL C 114 N GLY C 102 SHEET 4 C 5 GLY C 122 CYS C 125 -1 O TYR C 123 N TRP C 115 SHEET 5 C 5 CYS C 144 GLU C 145 -1 O GLU C 145 N LYS C 124 SHEET 1 D 5 TYR D 83 HIS D 88 0 SHEET 2 D 5 SER D 99 PRO D 104 -1 O SER D 99 N HIS D 88 SHEET 3 D 5 SER D 113 ASN D 117 -1 O VAL D 114 N GLY D 102 SHEET 4 D 5 GLY D 122 CYS D 125 -1 O CYS D 125 N SER D 113 SHEET 5 D 5 CYS D 144 ALA D 146 -1 O GLU D 145 N LYS D 124 SSBOND 1 CYS A 125 CYS A 144 1555 1555 2.06 SSBOND 2 CYS B 125 CYS B 144 1555 1555 2.05 SSBOND 3 CYS C 125 CYS C 144 1555 1555 2.05 SSBOND 4 CYS D 125 CYS D 144 1555 1555 2.05 CRYST1 76.836 76.836 89.663 90.00 90.00 90.00 P 43 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013015 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013015 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011153 0.00000